Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:45:29 (2086087): wrapper (7.7.26015): starting
11:45:29 (2086087): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 11:45:29] Arguments: --nthreads 8
[2025-11-27 11:45:29] Threads: 8
[2025-11-27 11:45:29] Checking for CVMFS
[2025-11-27 11:45:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 11:45:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 11:45:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 11:45:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 11:45:30] 2.13.3.0 15551 30045 335252 153373 0 220 25492285 32935937 25641 16776704 0 61425297 99.546 76841491 40665 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 11:45:30] CVMFS is ok
[2025-11-27 11:45:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 11:45:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 11:45:30] Further information can be found at the LHC@home message board.
[2025-11-27 11:45:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 11:45:30] Checking for apptainer binary...
[2025-11-27 11:45:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 11:45:30] Running /usr/bin/apptainer --version
[2025-11-27 11:45:30] apptainer version 1.4.4-1.el9
[2025-11-27 11:45:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 11:45:31] c6-5-7-3.aglt2.org
[2025-11-27 11:45:31] apptainer works
[2025-11-27 11:45:31] Set ATHENA_PROC_NUMBER=8
[2025-11-27 11:45:31] Set ATHENA_CORE_NUMBER=8
[2025-11-27 11:45:31] Starting ATLAS job with PandaID=6898120579
[2025-11-27 11:45:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 02:22:30]  *** The last 200 lines of the pilot log: ***
[2025-11-28 02:22:30] 2025-11-28 07:21:31,212 | INFO     | monitor loop #3293: job 0:6898120579 is in state 'finished'
[2025-11-28 02:22:30] 2025-11-28 07:21:31,213 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:22:30] 2025-11-28 07:21:32,378 | INFO     | PID=2090468 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 02:22:30] 2025-11-28 07:21:32,378 | INFO     | .. there are 41 such processes running
[2025-11-28 02:22:30] 2025-11-28 07:21:33,379 | INFO     | time since job start (52543s) is within the limit (172800.0s)
[2025-11-28 02:22:30] 2025-11-28 07:21:33,726 | INFO     | monitor loop #3294: job 0:6898120579 is in state 'finished'
[2025-11-28 02:22:30] 2025-11-28 07:21:33,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:22:30] 2025-11-28 07:21:35,423 | INFO     | time since job start (52545s) is within the limit (172800.0s)
[2025-11-28 02:22:30] 2025-11-28 07:21:36,231 | INFO     | monitor loop #3295: job 0:6898120579 is in state 'finished'
[2025-11-28 02:22:30] 2025-11-28 07:21:36,231 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:22:30] 2025-11-28 07:21:37,430 | INFO     | time since job start (52547s) is within the limit (172800.0s)
[2025-11-28 02:22:30] 2025-11-28 07:21:38,736 | INFO     | monitor loop #3296: job 0:6898120579 is in state 'finished'
[2025-11-28 02:22:30] 2025-11-28 07:21:38,736 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:22:30] 2025-11-28 07:21:39,438 | INFO     | time since job start (52549s) is within the limit (172800.0s)
[2025-11-28 02:22:30] 2025-11-28 07:21:41,249 | INFO     | monitor loop #3297: job 0:6898120579 is in state 'finished'
[2025-11-28 02:22:30] 2025-11-28 07:21:41,249 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:22:30] 2025-11-28 07:21:41,439 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 02:22:30] 2025-11-28 07:21:41,447 | INFO     | time since job start (52551s) is within the limit (172800.0s)
[2025-11-28 02:22:30] 2025-11-28 07:21:41,572 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2968.3521964285715
[2025-11-28 02:22:30] 2025-11-28 07:21:41,641 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6898120579/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 02:22:30] 2025-11-28 07:21:41,642 | INFO     | extracted standard info from prmon json
[2025-11-28 02:22:30] 2025-11-28 07:21:41,642 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 02:22:30] 2025-11-28 07:21:41,642 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 02:22:30] 2025-11-28 07:21:41,703 | INFO     | fitting pss+swap vs Time
[2025-11-28 02:22:30] 2025-11-28 07:21:41,705 | INFO     | sum of square deviations: 197237058388.80383
[2025-11-28 02:22:30] 2025-11-28 07:21:41,718 | INFO     | sum of deviations: 338923812002.3977
[2025-11-28 02:22:30] 2025-11-28 07:21:41,718 | INFO     | mean x: 1764288187.5151162
[2025-11-28 02:22:30] 2025-11-28 07:21:41,718 | INFO     | mean y: 2923115.123255814
[2025-11-28 02:22:30] 2025-11-28 07:21:41,718 | INFO     | intersect: -3028755023.1944237
[2025-11-28 02:22:30] 2025-11-28 07:21:41,719 | INFO     | chi2: 20.72373744506292
[2025-11-28 02:22:30] 2025-11-28 07:21:41,720 | INFO     | sum of square deviations: 193817223313.62103
[2025-11-28 02:22:30] 2025-11-28 07:21:41,733 | INFO     | sum of deviations: 640339934053.7582
[2025-11-28 02:22:30] 2025-11-28 07:21:41,734 | INFO     | mean x: 1764288035.0210526
[2025-11-28 02:22:30] 2025-11-28 07:21:41,734 | INFO     | mean y: 2936552.069005848
[2025-11-28 02:22:30] 2025-11-28 07:21:41,734 | INFO     | intersect: -5825978260.982181
[2025-11-28 02:22:30] 2025-11-28 07:21:41,735 | INFO     | chi2: 17.034059532479752
[2025-11-28 02:22:30] 2025-11-28 07:21:41,735 | INFO     | current chi2=17.034059532479752 (change=17.80411435130477 %)
[2025-11-28 02:22:30] 2025-11-28 07:21:41,735 | INFO     | right removable region: 854
[2025-11-28 02:22:30] 2025-11-28 07:21:41,736 | INFO     | sum of square deviations: 193816743000.66235
[2025-11-28 02:22:30] 2025-11-28 07:21:41,749 | INFO     | sum of deviations: 97563413251.07706
[2025-11-28 02:22:30] 2025-11-28 07:21:41,749 | INFO     | mean x: 1764288340.0198832
[2025-11-28 02:22:30] 2025-11-28 07:21:41,749 | INFO     | mean y: 2933861.583625731
[2025-11-28 02:22:30] 2025-11-28 07:21:41,749 | INFO     | intersect: -885173067.3973674
[2025-11-28 02:22:30] 2025-11-28 07:21:41,750 | INFO     | chi2: 18.556771934923653
[2025-11-28 02:22:30] 2025-11-28 07:21:41,751 | INFO     | current chi2=18.556771934923653 (change=10.456441633096977 %)
[2025-11-28 02:22:30] 2025-11-28 07:21:41,751 | INFO     | left removable region: 10
[2025-11-28 02:22:30] 2025-11-28 07:21:41,752 | INFO     | sum of square deviations: 186432333886.3175
[2025-11-28 02:22:30] 2025-11-28 07:21:41,778 | INFO     | sum of deviations: 387173205239.80786
[2025-11-28 02:22:30] 2025-11-28 07:21:41,779 | INFO     | mean x: 1764288309.528436
[2025-11-28 02:22:30] 2025-11-28 07:21:41,779 | INFO     | mean y: 2953092.19549763
[2025-11-28 02:22:30] 2025-11-28 07:21:41,779 | INFO     | intersect: -3661031290.3836403
[2025-11-28 02:22:30] 2025-11-28 07:21:41,780 | INFO     | chi2: 14.11536018188369
[2025-11-28 02:22:30] 2025-11-28 07:21:41,780 | INFO     | current memory leak: 2.08 B/s (using 844 data points, chi2=14.12)
[2025-11-28 02:22:30] 2025-11-28 07:21:41,781 | INFO     | could have reported an average CPU frequency of 3056 MHz (32 samples)
[2025-11-28 02:22:30] 2025-11-28 07:21:41,781 | INFO     | ..............................
[2025-11-28 02:22:30] 2025-11-28 07:21:41,781 | INFO     | . Timing measurements:
[2025-11-28 02:22:30] 2025-11-28 07:21:41,781 | INFO     | . get job = 0 s
[2025-11-28 02:22:30] 2025-11-28 07:21:41,781 | INFO     | . initial setup = 3 s
[2025-11-28 02:22:30] 2025-11-28 07:21:41,781 | INFO     | . payload setup = 11 s
[2025-11-28 02:22:30] 2025-11-28 07:21:41,781 | INFO     | . stage-in = 0 s
[2025-11-28 02:22:30] 2025-11-28 07:21:41,782 | INFO     | . payload execution = 52464 s
[2025-11-28 02:22:30] 2025-11-28 07:21:41,782 | INFO     | . stage-out = 12 s
[2025-11-28 02:22:30] 2025-11-28 07:21:41,782 | INFO     | . log creation = 4 s
[2025-11-28 02:22:30] 2025-11-28 07:21:41,782 | INFO     | ..............................
[2025-11-28 02:22:30] 2025-11-28 07:21:42,497 | INFO     | 
[2025-11-28 02:22:30] 2025-11-28 07:21:42,497 | INFO     | job summary report
[2025-11-28 02:22:30] 2025-11-28 07:21:42,497 | INFO     | --------------------------------------------------
[2025-11-28 02:22:30] 2025-11-28 07:21:42,497 | INFO     | PanDA job id: 6898120579
[2025-11-28 02:22:30] 2025-11-28 07:21:42,497 | INFO     | task id: 47556161
[2025-11-28 02:22:30] 2025-11-28 07:21:42,497 | INFO     | errors: (none)
[2025-11-28 02:22:30] 2025-11-28 07:21:42,497 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 02:22:30] 2025-11-28 07:21:42,498 | INFO     | pilot state: finished 
[2025-11-28 02:22:30] 2025-11-28 07:21:42,498 | INFO     | transexitcode: 0
[2025-11-28 02:22:30] 2025-11-28 07:21:42,498 | INFO     | exeerrorcode: 0
[2025-11-28 02:22:30] 2025-11-28 07:21:42,498 | INFO     | exeerrordiag: 
[2025-11-28 02:22:30] 2025-11-28 07:21:42,498 | INFO     | exitcode: 0
[2025-11-28 02:22:30] 2025-11-28 07:21:42,498 | INFO     | exitmsg: OK
[2025-11-28 02:22:30] 2025-11-28 07:21:42,498 | INFO     | cpuconsumptiontime: 232264 s
[2025-11-28 02:22:30] 2025-11-28 07:21:42,498 | INFO     | nevents: 1000
[2025-11-28 02:22:30] 2025-11-28 07:21:42,498 | INFO     | neventsw: 0
[2025-11-28 02:22:30] 2025-11-28 07:21:42,498 | INFO     | pid: 2097349
[2025-11-28 02:22:30] 2025-11-28 07:21:42,498 | INFO     | pgrp: 2097349
[2025-11-28 02:22:30] 2025-11-28 07:21:42,498 | INFO     | corecount: 8
[2025-11-28 02:22:30] 2025-11-28 07:21:42,498 | INFO     | event service: False
[2025-11-28 02:22:30] 2025-11-28 07:21:42,498 | INFO     | sizes: {0: 2284037, 1: 2284292, 8: 2284554, 12: 2284582, 52479: 2334204, 52480: 2334203, 52492: 2343381, 52495: 2343437, 52534: 2343683}
[2025-11-28 02:22:30] 2025-11-28 07:21:42,498 | INFO     | --------------------------------------------------
[2025-11-28 02:22:30] 2025-11-28 07:21:42,499 | INFO     | 
[2025-11-28 02:22:30] 2025-11-28 07:21:42,499 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 02:22:30] 2025-11-28 07:21:42,561 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,561 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,562 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,562 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,562 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,562 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,562 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,562 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,562 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,562 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,562 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,562 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,562 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,562 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,563 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,563 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,563 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,563 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 02:22:30] 2025-11-28 07:21:42,563 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,563 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 02:22:30] 2025-11-28 07:21:42,563 | INFO     | job 6898120579 has completed (purged errors)
[2025-11-28 02:22:30] 2025-11-28 07:21:42,563 | INFO     | overall cleanup function is called
[2025-11-28 02:22:30] 2025-11-28 07:21:43,635 | INFO     | --- collectZombieJob: --- 10, [2097349]
[2025-11-28 02:22:30] 2025-11-28 07:21:43,635 | INFO     | zombie collector waiting for pid 2097349
[2025-11-28 02:22:30] 2025-11-28 07:21:43,635 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 02:22:30] 2025-11-28 07:21:43,635 | INFO     | collected zombie processes
[2025-11-28 02:22:30] 2025-11-28 07:21:43,635 | INFO     | will attempt to kill all subprocesses of pid=2097349
[2025-11-28 02:22:30] 2025-11-28 07:21:45,112 | INFO     | process IDs to be killed: [2097349] (in reverse order)
[2025-11-28 02:22:30] 2025-11-28 07:21:45,647 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 02:22:30] 2025-11-28 07:21:45,647 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 02:22:30] 2025-11-28 07:21:45,672 | INFO     | did not find any defunct processes belonging to 2097349
[2025-11-28 02:22:30] 2025-11-28 07:21:45,706 | INFO     | did not find any defunct processes belonging to 2097349
[2025-11-28 02:22:30] 2025-11-28 07:21:45,722 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 02:22:30] 2025-11-28 07:21:45,722 | INFO     | ready for new job
[2025-11-28 02:22:30] 2025-11-28 07:21:45,723 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 02:22:30] 2025-11-28 07:21:45,739 | INFO     | ***************************************
[2025-11-28 02:22:30] 2025-11-28 07:21:45,739 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 02:22:30] 2025-11-28 07:21:45,740 | INFO     | ***************************************
[2025-11-28 02:22:30] 2025-11-28 07:21:45,740 | INFO     | 
[2025-11-28 02:22:30] 2025-11-28 07:21:45,751 | INFO     | architecture information:
[2025-11-28 02:22:30] 2025-11-28 07:21:45,754 | INFO     | executing command: cat /etc/os-release
[2025-11-28 02:22:30] 2025-11-28 07:21:45,864 | INFO     | cat /etc/os-release:
[2025-11-28 02:22:30] NAME="CentOS Linux"
[2025-11-28 02:22:30] VERSION="7 (Core)"
[2025-11-28 02:22:30] ID="centos"
[2025-11-28 02:22:30] ID_LIKE="rhel fedora"
[2025-11-28 02:22:30] VERSION_ID="7"
[2025-11-28 02:22:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 02:22:30] ANSI_COLOR="0;31"
[2025-11-28 02:22:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 02:22:30] HOME_URL="https://www.centos.org/"
[2025-11-28 02:22:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 02:22:30] 
[2025-11-28 02:22:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 02:22:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 02:22:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 02:22:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 02:22:30] 
[2025-11-28 02:22:30] 2025-11-28 07:21:45,864 | INFO     | ***************************************
[2025-11-28 02:22:30] 2025-11-28 07:21:46,378 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 02:22:30] 2025-11-28 07:21:46,503 | INFO     | sufficient remaining disk space (69386371072 B)
[2025-11-28 02:22:30] 2025-11-28 07:21:46,504 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 02:22:30] 2025-11-28 07:21:46,504 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 02:22:30] 2025-11-28 07:21:46,504 | INFO     | update_server=False
[2025-11-28 02:22:30] 2025-11-28 07:21:46,504 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 02:22:30] 2025-11-28 07:21:46,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 02:22:30] 2025-11-28 07:21:47,080 | INFO     | all data control threads have been joined
[2025-11-28 02:22:30] 2025-11-28 07:21:47,118 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:22:30] 2025-11-28 07:21:47,289 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:22:30] 2025-11-28 07:21:47,289 | INFO     | aborting loop
[2025-11-28 02:22:30] 2025-11-28 07:21:47,519 | INFO     | [job] retrieve thread has finished
[2025-11-28 02:22:30] 2025-11-28 07:21:47,536 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 02:22:30] 2025-11-28 07:21:48,014 | INFO     | all payload control threads have been joined
[2025-11-28 02:22:30] 2025-11-28 07:21:48,014 | INFO     | all job control threads have been joined
[2025-11-28 02:22:30] 2025-11-28 07:21:48,085 | INFO     | [data] control thread has finished
[2025-11-28 02:22:30] 2025-11-28 07:21:48,112 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 02:22:30] 2025-11-28 07:21:48,127 | INFO     | [job] queue monitor thread has finished
[2025-11-28 02:22:30] 2025-11-28 07:21:48,298 | INFO     | [job] job monitor thread has finished
[2025-11-28 02:22:30] 2025-11-28 07:21:48,315 | INFO     | [payload] failed_post thread has finished
[2025-11-28 02:22:30] 2025-11-28 07:21:48,482 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 02:22:30] 2025-11-28 07:21:48,482 | INFO     | [job] validate thread has finished
[2025-11-28 02:22:30] 2025-11-28 07:21:48,511 | INFO     | [data] copytool_out thread has finished
[2025-11-28 02:22:30] 2025-11-28 07:21:48,529 | INFO     | [data] copytool_in thread has finished
[2025-11-28 02:22:30] 2025-11-28 07:21:48,794 | INFO     | [payload] validate_post thread has finished
[2025-11-28 02:22:30] 2025-11-28 07:21:48,993 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 02:22:30] 2025-11-28 07:21:49,020 | INFO     | [payload] control thread has finished
[2025-11-28 02:22:30] 2025-11-28 07:21:49,026 | INFO     | [job] control thread has finished
[2025-11-28 02:22:30] 2025-11-28 07:21:49,662 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 02:22:30] 2025-11-28 07:21:53,682 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 02:22:30] 2025-11-28 07:22:15,695 | INFO     | PID=2090468 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 02:22:30] 2025-11-28 07:22:15,695 | INFO     | .. there are 41 such processes running
[2025-11-28 02:22:30] 2025-11-28 07:22:15,696 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 02:22:30] 2025-11-28 07:22:15,696 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 02:22:30] 2025-11-28 07:22:15,696 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 02:22:30] 2025-11-28 07:22:22,005 | INFO     | [monitor] cgroup control has ended
[2025-11-28 02:22:30] 2025-11-28 07:22:23,657 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140627598993216)>', '<ExcThread(monitor, started 140627245242112)>']
[2025-11-28 02:22:30] 2025-11-28 07:22:23,798 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 02:22:30] 2025-11-28 07:22:23,798 | INFO     | [monitor] control thread has ended
[2025-11-28 02:22:30] 2025-11-28 07:22:28,684 | INFO     | all workflow threads have been joined
[2025-11-28 02:22:30] 2025-11-28 07:22:28,684 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 02:22:30] 2025-11-28 07:22:28,684 | INFO     | traces error code: 0
[2025-11-28 02:22:30] 2025-11-28 07:22:28,685 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 02:22:30] 2025-11-28 07:22:29,099 [wrapper] ==== pilot stdout END ====
[2025-11-28 02:22:30] 2025-11-28 07:22:29,126 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 02:22:30] 2025-11-28 07:22:29,145 [wrapper] pilotpid: 2090468
[2025-11-28 02:22:30] 2025-11-28 07:22:29,163 [wrapper] Pilot exit status: 0
[2025-11-28 02:22:30] 2025-11-28 07:22:29,271 [wrapper] pandaids: 6898120579
[2025-11-28 02:22:30] 2025-11-28 07:22:29,698 [wrapper] cleanup supervisor_pilot  604547 2090469
[2025-11-28 02:22:30] 2025-11-28 07:22:29,721 [wrapper] Test setup, not cleaning
[2025-11-28 02:22:30] 2025-11-28 07:22:29,739 [wrapper] apfmon messages muted
[2025-11-28 02:22:30] 2025-11-28 07:22:29,759 [wrapper] ==== wrapper stdout END ====
[2025-11-28 02:22:30] 2025-11-28 07:22:29,774 [wrapper] ==== wrapper stderr END ====
[2025-11-28 02:22:30]  *** Error codes and diagnostics ***
[2025-11-28 02:22:30]     "exeErrorCode": 0,
[2025-11-28 02:22:30]     "exeErrorDiag": "",
[2025-11-28 02:22:30]     "pilotErrorCode": 0,
[2025-11-28 02:22:30]     "pilotErrorDiag": "",
[2025-11-28 02:22:30]  *** Listing of results directory ***
[2025-11-28 02:22:30] total 1310400
[2025-11-28 02:22:30] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-28 02:22:30] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:36 queuedata.json
[2025-11-28 02:22:30] -rwx------. 1 boincer umatlas     36292 Nov 25 22:39 runpilot2-wrapper.sh
[2025-11-28 02:22:30] -rw-r--r--. 1 boincer umatlas       100 Nov 27 11:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 02:22:30] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 11:45 run_atlas
[2025-11-28 02:22:30] -rw-r--r--. 1 boincer umatlas       105 Nov 27 11:45 job.xml
[2025-11-28 02:22:30] -rw-r--r--. 2 boincer umatlas 409467833 Nov 27 11:45 EVNT.47483658._002439.pool.root.1
[2025-11-28 02:22:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 11:45 start_atlas.sh
[2025-11-28 02:22:30] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 11:45 shared
[2025-11-28 02:22:30] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 11:45 input.tar.gz
[2025-11-28 02:22:30] -rw-r--r--. 1 boincer umatlas         0 Nov 27 11:45 boinc_lockfile
[2025-11-28 02:22:30] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 11:45 pandaJob.out
[2025-11-28 02:22:30] -rw-------. 1 boincer umatlas        57 Nov 27 11:45 setup.sh.local
[2025-11-28 02:22:30] -rw-------. 1 boincer umatlas    991572 Nov 27 11:45 agis_schedconf.cvmfs.json
[2025-11-28 02:22:30] drwx------. 5 boincer umatlas      4096 Nov 27 11:45 pilot3
[2025-11-28 02:22:30] -rw-r--r--. 1 boincer umatlas       533 Nov 28 01:42 boinc_task_state.xml
[2025-11-28 02:22:30] -rw-------. 1 boincer umatlas 910697901 Nov 28 02:18 HITS.47556161._004212.pool.root.1
[2025-11-28 02:22:30] -rw-------. 1 boincer umatlas      1058 Nov 28 02:20 memory_monitor_summary.json
[2025-11-28 02:22:30] -rw-------. 1 boincer umatlas   1516240 Nov 28 02:20 agis_ddmendpoints.agis.ALL.json
[2025-11-28 02:22:30] -rw-------. 1 boincer umatlas   2050718 Nov 28 02:20 log.47556161._004212.job.log.tgz.1
[2025-11-28 02:22:30] -rw-------. 1 boincer umatlas      8621 Nov 28 02:21 heartbeat.json
[2025-11-28 02:22:30] -rw-------. 1 boincer umatlas        95 Nov 28 02:22 pilot_heartbeat.json
[2025-11-28 02:22:30] -rw-r--r--. 1 boincer umatlas      6844 Nov 28 02:22 init_data.xml
[2025-11-28 02:22:30] -rw-------. 1 boincer umatlas      4824 Nov 28 02:22 pilotlog.txt
[2025-11-28 02:22:30] -rw-------. 1 boincer umatlas   6831840 Nov 28 02:22 log.47556161._004212.job.log.1
[2025-11-28 02:22:30] -rw-r--r--. 1 boincer umatlas        29 Nov 28 02:22 wrapper_checkpoint.txt
[2025-11-28 02:22:30] -rw-------. 1 boincer umatlas       353 Nov 28 02:22 output.list
[2025-11-28 02:22:30] -rw-r--r--. 1 boincer umatlas       620 Nov 28 02:22 runtime_log
[2025-11-28 02:22:30] -rw-------. 1 boincer umatlas   8898560 Nov 28 02:22 result.tar.gz
[2025-11-28 02:22:30] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 02:22 boinc_mmap_file
[2025-11-28 02:22:30] -rw-r--r--. 1 boincer umatlas      9343 Nov 28 02:22 runtime_log.err
[2025-11-28 02:22:30] -rw-------. 1 boincer umatlas       660 Nov 28 02:22 EFrLDmsYLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsrJKDm559xMo.diag
[2025-11-28 02:22:30] -rw-r--r--. 1 boincer umatlas     21868 Nov 28 02:22 stderr.txt
[2025-11-28 02:22:30] HITS file was successfully produced:
[2025-11-28 02:22:30] -rw-------. 1 boincer umatlas 910697901 Nov 28 02:18 shared/HITS.pool.root.1
[2025-11-28 02:22:30]  *** Contents of shared directory: ***
[2025-11-28 02:22:30] total 1298524
[2025-11-28 02:22:30] -rw-r--r--. 2 boincer umatlas 409467833 Nov 27 11:45 ATLAS.root_0
[2025-11-28 02:22:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 11:45 start_atlas.sh
[2025-11-28 02:22:30] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 11:45 input.tar.gz
[2025-11-28 02:22:30] -rw-------. 1 boincer umatlas 910697901 Nov 28 02:18 HITS.pool.root.1
[2025-11-28 02:22:30] -rw-------. 1 boincer umatlas   8898560 Nov 28 02:22 result.tar.gz
02:22:31 (2086087): run_atlas exited; CPU time 233836.120018
02:22:31 (2086087): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN