Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:51 (1398505): wrapper (7.7.26015): starting
00:00:51 (1398505): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:00:51] Arguments: --nthreads 9
[2025-11-27 00:00:51] Threads: 9
[2025-11-27 00:00:51] Checking for CVMFS
[2025-11-27 00:00:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:00:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:00:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:00:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:00:53] 2.13.3.0 5308 9428 222200 153347 1 216 25941627 32935936 26717 16776704 0 27730510 99.380 50830069 40111 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:00:53] CVMFS is ok
[2025-11-27 00:00:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:00:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:00:53] Further information can be found at the LHC@home message board.
[2025-11-27 00:00:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:00:53] Checking for apptainer binary...
[2025-11-27 00:00:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:00:53] Running /usr/bin/apptainer --version
[2025-11-27 00:00:54] apptainer version 1.4.4-1.el9
[2025-11-27 00:00:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:00:54] c6-1-24-1.aglt2.org
[2025-11-27 00:00:54] apptainer works
[2025-11-27 00:00:54] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:00:54] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:00:54] Starting ATLAS job with PandaID=6898120539
[2025-11-27 00:00:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 07:29:29]  *** The last 200 lines of the pilot log: ***
[2025-11-28 07:29:29] 2025-11-28 12:28:31,411 | INFO     | .. there are 33 such processes running
[2025-11-28 07:29:29] 2025-11-28 12:28:32,128 | INFO     | monitor loop #6248: job 0:6898120539 is in state 'finished'
[2025-11-28 07:29:29] 2025-11-28 12:28:32,128 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:29:29] 2025-11-28 12:28:32,412 | INFO     | time since job start (113212s) is within the limit (172800.0s)
[2025-11-28 07:29:29] 2025-11-28 12:28:34,435 | INFO     | time since job start (113214s) is within the limit (172800.0s)
[2025-11-28 07:29:29] 2025-11-28 12:28:34,646 | INFO     | monitor loop #6249: job 0:6898120539 is in state 'finished'
[2025-11-28 07:29:29] 2025-11-28 12:28:34,646 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:29:29] 2025-11-28 12:28:36,446 | INFO     | time since job start (113216s) is within the limit (172800.0s)
[2025-11-28 07:29:29] 2025-11-28 12:28:37,163 | INFO     | monitor loop #6250: job 0:6898120539 is in state 'finished'
[2025-11-28 07:29:29] 2025-11-28 12:28:37,164 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:29:29] 2025-11-28 12:28:38,462 | INFO     | time since job start (113218s) is within the limit (172800.0s)
[2025-11-28 07:29:29] 2025-11-28 12:28:39,670 | INFO     | monitor loop #6251: job 0:6898120539 is in state 'finished'
[2025-11-28 07:29:29] 2025-11-28 12:28:39,670 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:29:29] 2025-11-28 12:28:40,480 | INFO     | time since job start (113220s) is within the limit (172800.0s)
[2025-11-28 07:29:29] 2025-11-28 12:28:41,250 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 07:29:29] 2025-11-28 12:28:41,261 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2941.8696250000003
[2025-11-28 07:29:29] 2025-11-28 12:28:41,366 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6898120539/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 07:29:29] 2025-11-28 12:28:41,367 | INFO     | extracted standard info from prmon json
[2025-11-28 07:29:29] 2025-11-28 12:28:41,367 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 07:29:29] 2025-11-28 12:28:41,367 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 07:29:29] 2025-11-28 12:28:41,710 | INFO     | fitting pss+swap vs Time
[2025-11-28 07:29:29] 2025-11-28 12:28:41,718 | INFO     | sum of square deviations: 1976231147369.1064
[2025-11-28 07:29:29] 2025-11-28 12:28:41,909 | INFO     | sum of deviations: 4012045474435.3745
[2025-11-28 07:29:29] 2025-11-28 12:28:41,909 | INFO     | mean x: 1764276328.1812298
[2025-11-28 07:29:29] 2025-11-28 12:28:41,909 | INFO     | mean y: 3068285.8381877025
[2025-11-28 07:29:29] 2025-11-28 12:28:41,909 | INFO     | intersect: -3578677132.736028
[2025-11-28 07:29:29] 2025-11-28 12:28:41,911 | INFO     | chi2: 38.95713516764992
[2025-11-28 07:29:29] 2025-11-28 12:28:41,918 | INFO     | sum of square deviations: 1960289510643.1792
[2025-11-28 07:29:29] 2025-11-28 12:28:42,048 | INFO     | sum of deviations: 4712809231054.717
[2025-11-28 07:29:29] 2025-11-28 12:28:42,048 | INFO     | mean x: 1764276175.6960518
[2025-11-28 07:29:29] 2025-11-28 12:28:42,048 | INFO     | mean y: 3074987.6614386155
[2025-11-28 07:29:29] 2025-11-28 12:28:42,048 | INFO     | intersect: -4238490863.610285
[2025-11-28 07:29:29] 2025-11-28 12:28:42,059 | INFO     | chi2: 35.07600192868939
[2025-11-28 07:29:29] 2025-11-28 12:28:42,059 | INFO     | current chi2=35.07600192868939 (change=9.962573536935635 %)
[2025-11-28 07:29:29] 2025-11-28 12:28:42,060 | INFO     | right removable region: 1848
[2025-11-28 07:29:29] 2025-11-28 12:28:42,078 | INFO     | sum of square deviations: 1960283198474.7866
[2025-11-28 07:29:29] 2025-11-28 12:28:42,184 | INFO     | monitor loop #6252: job 0:6898120539 is in state 'finished'
[2025-11-28 07:29:29] 2025-11-28 12:28:42,184 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:29:29] 2025-11-28 12:28:42,397 | INFO     | sum of deviations: 3335524847565.0806
[2025-11-28 07:29:29] 2025-11-28 12:28:42,397 | INFO     | mean x: 1764276480.6965928
[2025-11-28 07:29:29] 2025-11-28 12:28:42,397 | INFO     | mean y: 3074753.82368848
[2025-11-28 07:29:29] 2025-11-28 12:28:42,398 | INFO     | intersect: -2998934366.0406575
[2025-11-28 07:29:29] 2025-11-28 12:28:42,413 | INFO     | chi2: 36.049467706766045
[2025-11-28 07:29:29] 2025-11-28 12:28:42,414 | INFO     | current chi2=36.049467706766045 (change=7.463760998776961 %)
[2025-11-28 07:29:29] 2025-11-28 12:28:42,414 | INFO     | left removable region: 10
[2025-11-28 07:29:29] 2025-11-28 12:28:42,429 | INFO     | sum of square deviations: 1925508268918.941
[2025-11-28 07:29:29] 2025-11-28 12:28:42,505 | INFO     | time since job start (113222s) is within the limit (172800.0s)
[2025-11-28 07:29:29] 2025-11-28 12:28:43,143 | INFO     | sum of deviations: 3914655207840.278
[2025-11-28 07:29:29] 2025-11-28 12:28:43,144 | INFO     | mean x: 1764276450.227421
[2025-11-28 07:29:29] 2025-11-28 12:28:43,144 | INFO     | mean y: 3085049.1811751905
[2025-11-28 07:29:29] 2025-11-28 12:28:43,144 | INFO     | intersect: -3583777757.6092324
[2025-11-28 07:29:29] 2025-11-28 12:28:43,146 | INFO     | chi2: 31.23967719889853
[2025-11-28 07:29:29] 2025-11-28 12:28:43,146 | INFO     | current memory leak: 2.03 B/s (using 1838 data points, chi2=31.24)
[2025-11-28 07:29:29] 2025-11-28 12:28:43,152 | INFO     | could have reported an average CPU frequency of 2931 MHz (65 samples)
[2025-11-28 07:29:29] 2025-11-28 12:28:43,152 | INFO     | ..............................
[2025-11-28 07:29:29] 2025-11-28 12:28:43,153 | INFO     | . Timing measurements:
[2025-11-28 07:29:29] 2025-11-28 12:28:43,153 | INFO     | . get job = 0 s
[2025-11-28 07:29:29] 2025-11-28 12:28:43,153 | INFO     | . initial setup = 3 s
[2025-11-28 07:29:29] 2025-11-28 12:28:43,153 | INFO     | . payload setup = 28 s
[2025-11-28 07:29:29] 2025-11-28 12:28:43,153 | INFO     | . stage-in = 0 s
[2025-11-28 07:29:29] 2025-11-28 12:28:43,153 | INFO     | . payload execution = 113080 s
[2025-11-28 07:29:29] 2025-11-28 12:28:43,153 | INFO     | . stage-out = 9 s
[2025-11-28 07:29:29] 2025-11-28 12:28:43,153 | INFO     | . log creation = 3 s
[2025-11-28 07:29:29] 2025-11-28 12:28:43,153 | INFO     | ..............................
[2025-11-28 07:29:29] 2025-11-28 12:28:43,353 | INFO     | 
[2025-11-28 07:29:29] 2025-11-28 12:28:43,353 | INFO     | job summary report
[2025-11-28 07:29:29] 2025-11-28 12:28:43,353 | INFO     | --------------------------------------------------
[2025-11-28 07:29:29] 2025-11-28 12:28:43,353 | INFO     | PanDA job id: 6898120539
[2025-11-28 07:29:29] 2025-11-28 12:28:43,353 | INFO     | task id: 47556173
[2025-11-28 07:29:29] 2025-11-28 12:28:43,353 | INFO     | errors: (none)
[2025-11-28 07:29:29] 2025-11-28 12:28:43,353 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 07:29:29] 2025-11-28 12:28:43,354 | INFO     | pilot state: finished 
[2025-11-28 07:29:29] 2025-11-28 12:28:43,354 | INFO     | transexitcode: 0
[2025-11-28 07:29:29] 2025-11-28 12:28:43,354 | INFO     | exeerrorcode: 0
[2025-11-28 07:29:29] 2025-11-28 12:28:43,354 | INFO     | exeerrordiag: 
[2025-11-28 07:29:29] 2025-11-28 12:28:43,354 | INFO     | exitcode: 0
[2025-11-28 07:29:29] 2025-11-28 12:28:43,354 | INFO     | exitmsg: OK
[2025-11-28 07:29:29] 2025-11-28 12:28:43,354 | INFO     | cpuconsumptiontime: 253995 s
[2025-11-28 07:29:29] 2025-11-28 12:28:43,354 | INFO     | nevents: 1000
[2025-11-28 07:29:29] 2025-11-28 12:28:43,354 | INFO     | neventsw: 0
[2025-11-28 07:29:29] 2025-11-28 12:28:43,354 | INFO     | pid: 1416815
[2025-11-28 07:29:29] 2025-11-28 12:28:43,354 | INFO     | pgrp: 1416815
[2025-11-28 07:29:29] 2025-11-28 12:28:43,354 | INFO     | corecount: 9
[2025-11-28 07:29:29] 2025-11-28 12:28:43,354 | INFO     | event service: False
[2025-11-28 07:29:29] 2025-11-28 12:28:43,354 | INFO     | sizes: {0: 2284037, 1: 2284121, 2: 2284292, 3: 2284348, 14: 2284348, 18: 2284638, 25: 2284794, 113114: 2360221, 113115: 2360220, 113125: 2369270, 113127: 2369326, 
[2025-11-28 07:29:29] 2025-11-28 12:28:43,354 | INFO     | --------------------------------------------------
[2025-11-28 07:29:29] 2025-11-28 12:28:43,355 | INFO     | 
[2025-11-28 07:29:29] 2025-11-28 12:28:43,355 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 07:29:29] 2025-11-28 12:28:43,473 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,474 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,474 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,474 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,474 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,474 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,474 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,474 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,474 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,474 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,474 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,474 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,475 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,475 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,475 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,475 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,475 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,475 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 07:29:29] 2025-11-28 12:28:43,475 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,475 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 07:29:29] 2025-11-28 12:28:43,475 | INFO     | job 6898120539 has completed (purged errors)
[2025-11-28 07:29:29] 2025-11-28 12:28:43,475 | INFO     | overall cleanup function is called
[2025-11-28 07:29:29] 2025-11-28 12:28:44,512 | INFO     | --- collectZombieJob: --- 10, [1416815]
[2025-11-28 07:29:29] 2025-11-28 12:28:44,512 | INFO     | zombie collector waiting for pid 1416815
[2025-11-28 07:29:29] 2025-11-28 12:28:44,512 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 07:29:29] 2025-11-28 12:28:44,512 | INFO     | collected zombie processes
[2025-11-28 07:29:29] 2025-11-28 12:28:44,512 | INFO     | will attempt to kill all subprocesses of pid=1416815
[2025-11-28 07:29:29] 2025-11-28 12:28:49,582 | INFO     | process IDs to be killed: [1416815] (in reverse order)
[2025-11-28 07:29:29] 2025-11-28 12:28:49,965 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 07:29:29] 2025-11-28 12:28:49,966 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 07:29:29] 2025-11-28 12:28:50,024 | INFO     | did not find any defunct processes belonging to 1416815
[2025-11-28 07:29:29] 2025-11-28 12:28:50,107 | INFO     | did not find any defunct processes belonging to 1416815
[2025-11-28 07:29:29] 2025-11-28 12:28:50,125 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 07:29:29] 2025-11-28 12:28:50,125 | INFO     | ready for new job
[2025-11-28 07:29:29] 2025-11-28 12:28:50,125 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 07:29:29] 2025-11-28 12:28:50,152 | INFO     | ***************************************
[2025-11-28 07:29:29] 2025-11-28 12:28:50,153 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 07:29:29] 2025-11-28 12:28:50,153 | INFO     | ***************************************
[2025-11-28 07:29:29] 2025-11-28 12:28:50,173 | INFO     | 
[2025-11-28 07:29:29] 2025-11-28 12:28:50,176 | INFO     | architecture information:
[2025-11-28 07:29:29] 2025-11-28 12:28:50,196 | INFO     | executing command: cat /etc/os-release
[2025-11-28 07:29:29] 2025-11-28 12:28:50,256 | INFO     | cat /etc/os-release:
[2025-11-28 07:29:29] NAME="CentOS Linux"
[2025-11-28 07:29:29] VERSION="7 (Core)"
[2025-11-28 07:29:29] ID="centos"
[2025-11-28 07:29:29] ID_LIKE="rhel fedora"
[2025-11-28 07:29:29] VERSION_ID="7"
[2025-11-28 07:29:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 07:29:29] ANSI_COLOR="0;31"
[2025-11-28 07:29:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 07:29:29] HOME_URL="https://www.centos.org/"
[2025-11-28 07:29:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 07:29:29] 
[2025-11-28 07:29:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 07:29:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 07:29:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 07:29:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 07:29:29] 
[2025-11-28 07:29:29] 2025-11-28 12:28:50,256 | INFO     | ***************************************
[2025-11-28 07:29:29] 2025-11-28 12:28:50,760 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 07:29:29] 2025-11-28 12:28:50,906 | INFO     | sufficient remaining disk space (69495422976 B)
[2025-11-28 07:29:29] 2025-11-28 12:28:50,906 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 07:29:29] 2025-11-28 12:28:50,906 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 07:29:29] 2025-11-28 12:28:50,906 | INFO     | update_server=False
[2025-11-28 07:29:29] 2025-11-28 12:28:50,907 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 07:29:29] 2025-11-28 12:28:50,925 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:29:29] 2025-11-28 12:28:50,925 | INFO     | aborting loop
[2025-11-28 07:29:29] 2025-11-28 12:28:51,339 | INFO     | all payload control threads have been joined
[2025-11-28 07:29:29] 2025-11-28 12:28:51,425 | INFO     | all data control threads have been joined
[2025-11-28 07:29:29] 2025-11-28 12:28:51,882 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 07:29:29] 2025-11-28 12:28:51,915 | INFO     | [job] retrieve thread has finished
[2025-11-28 07:29:29] 2025-11-28 12:28:51,938 | INFO     | [job] job monitor thread has finished
[2025-11-28 07:29:29] 2025-11-28 12:28:52,096 | INFO     | [payload] validate_post thread has finished
[2025-11-28 07:29:29] 2025-11-28 12:28:52,125 | INFO     | [payload] failed_post thread has finished
[2025-11-28 07:29:29] 2025-11-28 12:28:52,305 | INFO     | all job control threads have been joined
[2025-11-28 07:29:29] 2025-11-28 12:28:52,377 | INFO     | [payload] control thread has finished
[2025-11-28 07:29:29] 2025-11-28 12:28:52,430 | INFO     | [data] control thread has finished
[2025-11-28 07:29:29] 2025-11-28 12:28:52,644 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 07:29:29] 2025-11-28 12:28:52,701 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:29:29] 2025-11-28 12:28:52,848 | INFO     | [data] copytool_in thread has finished
[2025-11-28 07:29:29] 2025-11-28 12:28:52,849 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 07:29:29] 2025-11-28 12:28:53,150 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 07:29:29] 2025-11-28 12:28:53,150 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 07:29:29] 2025-11-28 12:28:53,151 | INFO     | [job] validate thread has finished
[2025-11-28 07:29:29] 2025-11-28 12:28:53,316 | INFO     | [job] control thread has finished
[2025-11-28 07:29:29] 2025-11-28 12:28:53,721 | INFO     | [job] queue monitor thread has finished
[2025-11-28 07:29:29] 2025-11-28 12:28:53,881 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 07:29:29] 2025-11-28 12:28:53,906 | INFO     | [data] copytool_out thread has finished
[2025-11-28 07:29:29] 2025-11-28 12:28:57,890 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 07:29:29] 2025-11-28 12:29:17,007 | INFO     | PID=1409277 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 07:29:29] 2025-11-28 12:29:17,007 | INFO     | .. there are 33 such processes running
[2025-11-28 07:29:29] 2025-11-28 12:29:17,007 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 07:29:29] 2025-11-28 12:29:17,007 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 07:29:29] 2025-11-28 12:29:17,007 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 07:29:29] 2025-11-28 12:29:17,899 | INFO     | [monitor] cgroup control has ended
[2025-11-28 07:29:29] 2025-11-28 12:29:19,228 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140647073670976)>', '<ExcThread(monitor, started 140646111225600)>']
[2025-11-28 07:29:29] 2025-11-28 12:29:20,026 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 07:29:29] 2025-11-28 12:29:20,026 | INFO     | [monitor] control thread has ended
[2025-11-28 07:29:29] 2025-11-28 12:29:24,259 | INFO     | all workflow threads have been joined
[2025-11-28 07:29:29] 2025-11-28 12:29:24,259 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 07:29:29] 2025-11-28 12:29:24,259 | INFO     | traces error code: 0
[2025-11-28 07:29:29] 2025-11-28 12:29:24,259 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 07:29:29] 2025-11-28 12:29:28,063 [wrapper] ==== pilot stdout END ====
[2025-11-28 07:29:29] 2025-11-28 12:29:28,084 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 07:29:29] 2025-11-28 12:29:28,106 [wrapper] pilotpid: 1409277
[2025-11-28 07:29:29] 2025-11-28 12:29:28,123 [wrapper] Pilot exit status: 0
[2025-11-28 07:29:29] 2025-11-28 12:29:28,254 [wrapper] pandaids: 6898120539
[2025-11-28 07:29:29] 2025-11-28 12:29:28,448 [wrapper] cleanup supervisor_pilot 3444667 1409279
[2025-11-28 07:29:29] 2025-11-28 12:29:28,465 [wrapper] Test setup, not cleaning
[2025-11-28 07:29:29] 2025-11-28 12:29:28,487 [wrapper] apfmon messages muted
[2025-11-28 07:29:29] 2025-11-28 12:29:28,512 [wrapper] ==== wrapper stdout END ====
[2025-11-28 07:29:29] 2025-11-28 12:29:28,532 [wrapper] ==== wrapper stderr END ====
[2025-11-28 07:29:29]  *** Error codes and diagnostics ***
[2025-11-28 07:29:29]     "exeErrorCode": 0,
[2025-11-28 07:29:29]     "exeErrorDiag": "",
[2025-11-28 07:29:29]     "pilotErrorCode": 0,
[2025-11-28 07:29:29]     "pilotErrorDiag": "",
[2025-11-28 07:29:29]  *** Listing of results directory ***
[2025-11-28 07:29:29] total 1351288
[2025-11-28 07:29:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-28 07:29:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:36 queuedata.json
[2025-11-28 07:29:29] -rwx------. 1 boincer umatlas     36292 Nov 25 22:39 runpilot2-wrapper.sh
[2025-11-28 07:29:29] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 07:29:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:00 run_atlas
[2025-11-28 07:29:29] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:00 job.xml
[2025-11-28 07:29:29] -rw-r--r--. 2 boincer umatlas 411954429 Nov 27 00:00 EVNT.47483658._003164.pool.root.1
[2025-11-28 07:29:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:00 start_atlas.sh
[2025-11-28 07:29:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:00 shared
[2025-11-28 07:29:29] -rw-r--r--. 2 boincer umatlas    590097 Nov 27 00:00 input.tar.gz
[2025-11-28 07:29:29] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:00 boinc_lockfile
[2025-11-28 07:29:29] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:00 pandaJob.out
[2025-11-28 07:29:29] -rw-------. 1 boincer umatlas        57 Nov 27 00:00 setup.sh.local
[2025-11-28 07:29:29] -rw-------. 1 boincer umatlas    991570 Nov 27 00:01 agis_schedconf.cvmfs.json
[2025-11-28 07:29:29] drwx------. 5 boincer umatlas      4096 Nov 27 00:01 pilot3
[2025-11-28 07:29:29] -rw-r--r--. 1 boincer umatlas       533 Nov 28 06:12 boinc_task_state.xml
[2025-11-28 07:29:29] -rw-------. 1 boincer umatlas 935233483 Nov 28 07:25 HITS.47556173._001202.pool.root.1
[2025-11-28 07:29:29] -rw-------. 1 boincer umatlas      1059 Nov 28 07:27 memory_monitor_summary.json
[2025-11-28 07:29:29] -rw-------. 1 boincer umatlas   1516240 Nov 28 07:27 agis_ddmendpoints.agis.ALL.json
[2025-11-28 07:29:29] -rw-------. 1 boincer umatlas   2814715 Nov 28 07:27 log.47556173._001202.job.log.tgz.1
[2025-11-28 07:29:29] -rw-r--r--. 1 boincer umatlas      6842 Nov 28 07:28 init_data.xml
[2025-11-28 07:29:29] -rw-------. 1 boincer umatlas      8622 Nov 28 07:28 heartbeat.json
[2025-11-28 07:29:29] -rw-------. 1 boincer umatlas        95 Nov 28 07:28 pilot_heartbeat.json
[2025-11-28 07:29:29] -rw-------. 1 boincer umatlas      4824 Nov 28 07:29 pilotlog.txt
[2025-11-28 07:29:29] -rw-------. 1 boincer umatlas  13491928 Nov 28 07:29 log.47556173._001202.job.log.1
[2025-11-28 07:29:29] -rw-r--r--. 1 boincer umatlas        29 Nov 28 07:29 wrapper_checkpoint.txt
[2025-11-28 07:29:29] -rw-------. 1 boincer umatlas       353 Nov 28 07:29 output.list
[2025-11-28 07:29:29] -rw-r--r--. 1 boincer umatlas       620 Nov 28 07:29 runtime_log
[2025-11-28 07:29:29] -rw-------. 1 boincer umatlas  16322560 Nov 28 07:29 result.tar.gz
[2025-11-28 07:29:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 07:29 boinc_mmap_file
[2025-11-28 07:29:29] -rw-------. 1 boincer umatlas       664 Nov 28 07:29 vTCMDmsYLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6rJKDmJtDufm.diag
[2025-11-28 07:29:29] -rw-r--r--. 1 boincer umatlas      9349 Nov 28 07:29 runtime_log.err
[2025-11-28 07:29:29] -rw-r--r--. 1 boincer umatlas     21801 Nov 28 07:29 stderr.txt
[2025-11-28 07:29:29] HITS file was successfully produced:
[2025-11-28 07:29:29] -rw-------. 1 boincer umatlas 935233483 Nov 28 07:25 shared/HITS.pool.root.1
[2025-11-28 07:29:29]  *** Contents of shared directory: ***
[2025-11-28 07:29:29] total 1332160
[2025-11-28 07:29:29] -rw-r--r--. 2 boincer umatlas 411954429 Nov 27 00:00 ATLAS.root_0
[2025-11-28 07:29:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:00 start_atlas.sh
[2025-11-28 07:29:29] -rw-r--r--. 2 boincer umatlas    590097 Nov 27 00:00 input.tar.gz
[2025-11-28 07:29:29] -rw-------. 1 boincer umatlas 935233483 Nov 28 07:25 HITS.pool.root.1
[2025-11-28 07:29:29] -rw-------. 1 boincer umatlas  16322560 Nov 28 07:29 result.tar.gz
07:29:31 (1398505): run_atlas exited; CPU time 256949.390503
07:29:31 (1398505): called boinc_finish(0)

</stderr_txt>
]]>

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