Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:30 (3725684): wrapper (7.7.26015): starting
00:01:30 (3725684): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:01:30] Arguments: --nthreads 9
[2025-11-27 00:01:30] Threads: 9
[2025-11-27 00:01:30] Checking for CVMFS
[2025-11-27 00:01:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:01:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:01:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:01:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:01:32] 2.13.3.0 11883 30908 364612 153347 0 238 24246472 32935936 47030 16776704 0 163469034 99.605 178068590 34147 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:01:32] CVMFS is ok
[2025-11-27 00:01:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:01:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:01:32] Further information can be found at the LHC@home message board.
[2025-11-27 00:01:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:01:32] Checking for apptainer binary...
[2025-11-27 00:01:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:01:32] Running /usr/bin/apptainer --version
[2025-11-27 00:01:32] apptainer version 1.4.4-1.el9
[2025-11-27 00:01:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:01:33] c6-12-29-2.aglt2.org
[2025-11-27 00:01:33] apptainer works
[2025-11-27 00:01:33] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:01:33] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:01:33] Starting ATLAS job with PandaID=6898040239
[2025-11-27 00:01:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:54:33]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:54:33] 2025-11-28 04:53:31,559 | INFO     | time since job start (85848s) is within the limit (172800.0s)
[2025-11-27 23:54:33] 2025-11-28 04:53:32,129 | INFO     | monitor loop #4108: job 0:6898040239 is in state 'finished'
[2025-11-27 23:54:33] 2025-11-28 04:53:32,129 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:54:33] 2025-11-28 04:53:33,576 | INFO     | time since job start (85850s) is within the limit (172800.0s)
[2025-11-27 23:54:33] 2025-11-28 04:53:34,656 | INFO     | monitor loop #4109: job 0:6898040239 is in state 'finished'
[2025-11-27 23:54:33] 2025-11-28 04:53:34,656 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:54:33] 2025-11-28 04:53:35,584 | INFO     | time since job start (85852s) is within the limit (172800.0s)
[2025-11-27 23:54:33] 2025-11-28 04:53:37,176 | INFO     | monitor loop #4110: job 0:6898040239 is in state 'finished'
[2025-11-27 23:54:33] 2025-11-28 04:53:37,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:54:33] 2025-11-28 04:53:37,594 | INFO     | time since job start (85854s) is within the limit (172800.0s)
[2025-11-27 23:54:33] 2025-11-28 04:53:39,601 | INFO     | time since job start (85856s) is within the limit (172800.0s)
[2025-11-27 23:54:33] 2025-11-28 04:53:39,693 | INFO     | monitor loop #4111: job 0:6898040239 is in state 'finished'
[2025-11-27 23:54:33] 2025-11-28 04:53:39,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:54:33] 2025-11-28 04:53:41,608 | INFO     | time since job start (85858s) is within the limit (172800.0s)
[2025-11-27 23:54:33] 2025-11-28 04:53:42,206 | INFO     | monitor loop #4112: job 0:6898040239 is in state 'finished'
[2025-11-27 23:54:33] 2025-11-28 04:53:42,206 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:54:33] 2025-11-28 04:53:42,732 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 23:54:33] 2025-11-28 04:53:42,829 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2628.401229166667
[2025-11-27 23:54:33] 2025-11-28 04:53:42,936 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6898040239/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:54:33] 2025-11-28 04:53:42,937 | INFO     | extracted standard info from prmon json
[2025-11-27 23:54:33] 2025-11-28 04:53:42,937 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:54:33] 2025-11-28 04:53:42,938 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:54:33] 2025-11-28 04:53:43,077 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:54:33] 2025-11-28 04:53:43,083 | INFO     | sum of square deviations: 858152935014.7317
[2025-11-27 23:54:33] 2025-11-28 04:53:43,164 | INFO     | sum of deviations: 5348254708750.036
[2025-11-27 23:54:33] 2025-11-28 04:53:43,169 | INFO     | mean x: 1764262726.7535613
[2025-11-27 23:54:33] 2025-11-28 04:53:43,169 | INFO     | mean y: 3037581.344017094
[2025-11-27 23:54:33] 2025-11-28 04:53:43,169 | INFO     | intersect: -10992352693.315979
[2025-11-27 23:54:33] 2025-11-28 04:53:43,171 | INFO     | chi2: 18.316486361269614
[2025-11-27 23:54:33] 2025-11-28 04:53:43,177 | INFO     | sum of square deviations: 849018324346.616
[2025-11-27 23:54:33] 2025-11-28 04:53:43,259 | INFO     | sum of deviations: 5844858538800.591
[2025-11-27 23:54:33] 2025-11-28 04:53:43,266 | INFO     | mean x: 1764262574.2651894
[2025-11-27 23:54:33] 2025-11-28 04:53:43,266 | INFO     | mean y: 3045870.149392423
[2025-11-27 23:54:33] 2025-11-28 04:53:43,266 | INFO     | intersect: -12142587358.457264
[2025-11-27 23:54:33] 2025-11-28 04:53:43,268 | INFO     | chi2: 15.07257522307148
[2025-11-27 23:54:33] 2025-11-28 04:53:43,269 | INFO     | current chi2=15.07257522307148 (change=17.71033523687936 %)
[2025-11-27 23:54:33] 2025-11-28 04:53:43,269 | INFO     | right removable region: 1398
[2025-11-27 23:54:33] 2025-11-28 04:53:43,275 | INFO     | sum of square deviations: 849015537866.6133
[2025-11-27 23:54:33] 2025-11-28 04:53:43,363 | INFO     | sum of deviations: 4760205335433.84
[2025-11-27 23:54:33] 2025-11-28 04:53:43,363 | INFO     | mean x: 1764262879.2651894
[2025-11-27 23:54:33] 2025-11-28 04:53:43,364 | INFO     | mean y: 3047394.92494639
[2025-11-27 23:54:33] 2025-11-28 04:53:43,364 | INFO     | intersect: -9888707462.811771
[2025-11-27 23:54:33] 2025-11-28 04:53:43,366 | INFO     | chi2: 14.287037131632319
[2025-11-27 23:54:33] 2025-11-28 04:53:43,366 | INFO     | current chi2=14.287037131632319 (change=21.999029454456966 %)
[2025-11-27 23:54:33] 2025-11-28 04:53:43,366 | INFO     | left removable region: 10
[2025-11-27 23:54:33] 2025-11-28 04:53:43,372 | INFO     | sum of square deviations: 829145330343.4086
[2025-11-27 23:54:33] 2025-11-28 04:53:43,464 | INFO     | sum of deviations: 4849922707662.682
[2025-11-27 23:54:33] 2025-11-28 04:53:43,464 | INFO     | mean x: 1764262848.7910662
[2025-11-27 23:54:33] 2025-11-28 04:53:43,464 | INFO     | mean y: 3065891.119596542
[2025-11-27 23:54:33] 2025-11-28 04:53:43,465 | INFO     | intersect: -10316643018.166025
[2025-11-27 23:54:33] 2025-11-28 04:53:43,467 | INFO     | chi2: 7.543635485132836
[2025-11-27 23:54:33] 2025-11-28 04:53:43,467 | INFO     | current memory leak: 5.85 B/s (using 1388 data points, chi2=7.54)
[2025-11-27 23:54:33] 2025-11-28 04:53:43,474 | INFO     | could have reported an average CPU frequency of 2647 MHz (50 samples)
[2025-11-27 23:54:33] 2025-11-28 04:53:43,474 | INFO     | ..............................
[2025-11-27 23:54:33] 2025-11-28 04:53:43,475 | INFO     | . Timing measurements:
[2025-11-27 23:54:33] 2025-11-28 04:53:43,475 | INFO     | . get job = 0 s
[2025-11-27 23:54:33] 2025-11-28 04:53:43,475 | INFO     | . initial setup = 4 s
[2025-11-27 23:54:33] 2025-11-28 04:53:43,475 | INFO     | . payload setup = 52 s
[2025-11-27 23:54:33] 2025-11-28 04:53:43,475 | INFO     | . stage-in = 0 s
[2025-11-27 23:54:33] 2025-11-28 04:53:43,475 | INFO     | . payload execution = 85677 s
[2025-11-27 23:54:33] 2025-11-28 04:53:43,475 | INFO     | . stage-out = 14 s
[2025-11-27 23:54:33] 2025-11-28 04:53:43,475 | INFO     | . log creation = 1 s
[2025-11-27 23:54:33] 2025-11-28 04:53:43,475 | INFO     | ..............................
[2025-11-27 23:54:33] 2025-11-28 04:53:43,667 | INFO     | time since job start (85860s) is within the limit (172800.0s)
[2025-11-27 23:54:33] 2025-11-28 04:53:43,839 | INFO     | 
[2025-11-27 23:54:33] 2025-11-28 04:53:43,840 | INFO     | job summary report
[2025-11-27 23:54:33] 2025-11-28 04:53:43,840 | INFO     | --------------------------------------------------
[2025-11-27 23:54:33] 2025-11-28 04:53:43,840 | INFO     | PanDA job id: 6898040239
[2025-11-27 23:54:33] 2025-11-28 04:53:43,840 | INFO     | task id: 47556161
[2025-11-27 23:54:33] 2025-11-28 04:53:43,840 | INFO     | errors: (none)
[2025-11-27 23:54:33] 2025-11-28 04:53:43,840 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:54:33] 2025-11-28 04:53:43,840 | INFO     | pilot state: finished 
[2025-11-27 23:54:33] 2025-11-28 04:53:43,840 | INFO     | transexitcode: 0
[2025-11-27 23:54:33] 2025-11-28 04:53:43,841 | INFO     | exeerrorcode: 0
[2025-11-27 23:54:33] 2025-11-28 04:53:43,841 | INFO     | exeerrordiag: 
[2025-11-27 23:54:33] 2025-11-28 04:53:43,841 | INFO     | exitcode: 0
[2025-11-27 23:54:33] 2025-11-28 04:53:43,841 | INFO     | exitmsg: OK
[2025-11-27 23:54:33] 2025-11-28 04:53:43,841 | INFO     | cpuconsumptiontime: 268570 s
[2025-11-27 23:54:33] 2025-11-28 04:53:43,841 | INFO     | nevents: 1000
[2025-11-27 23:54:33] 2025-11-28 04:53:43,841 | INFO     | neventsw: 0
[2025-11-27 23:54:33] 2025-11-28 04:53:43,847 | INFO     | pid: 3769914
[2025-11-27 23:54:33] 2025-11-28 04:53:43,847 | INFO     | pgrp: 3769914
[2025-11-27 23:54:33] 2025-11-28 04:53:43,847 | INFO     | corecount: 9
[2025-11-27 23:54:33] 2025-11-28 04:53:43,847 | INFO     | event service: False
[2025-11-27 23:54:33] 2025-11-28 04:53:43,847 | INFO     | sizes: {0: 2283436, 1: 2284037, 2: 2284149, 3: 2284348, 15: 2284348, 28: 2284376, 37: 2284794, 39: 2284822, 85734: 2346387, 85735: 2346386, 85750: 2355436, 85753: 
[2025-11-27 23:54:33] 2025-11-28 04:53:43,848 | INFO     | --------------------------------------------------
[2025-11-27 23:54:33] 2025-11-28 04:53:43,848 | INFO     | 
[2025-11-27 23:54:33] 2025-11-28 04:53:43,848 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 23:54:33] 2025-11-28 04:53:43,952 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,952 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,953 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,953 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,953 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,953 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,953 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,953 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,953 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,953 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,953 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,953 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,953 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,953 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,953 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,954 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,954 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,954 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:54:33] 2025-11-28 04:53:43,954 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,954 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:54:33] 2025-11-28 04:53:43,954 | INFO     | job 6898040239 has completed (purged errors)
[2025-11-27 23:54:33] 2025-11-28 04:53:43,954 | INFO     | overall cleanup function is called
[2025-11-27 23:54:33] 2025-11-28 04:53:45,010 | INFO     | --- collectZombieJob: --- 10, [3769914]
[2025-11-27 23:54:33] 2025-11-28 04:53:45,010 | INFO     | zombie collector waiting for pid 3769914
[2025-11-27 23:54:33] 2025-11-28 04:53:45,010 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:54:33] 2025-11-28 04:53:45,010 | INFO     | collected zombie processes
[2025-11-27 23:54:33] 2025-11-28 04:53:45,010 | INFO     | will attempt to kill all subprocesses of pid=3769914
[2025-11-27 23:54:33] 2025-11-28 04:53:48,511 | INFO     | process IDs to be killed: [3769914] (in reverse order)
[2025-11-27 23:54:33] 2025-11-28 04:53:48,869 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:54:33] 2025-11-28 04:53:48,869 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:54:33] 2025-11-28 04:53:48,998 | INFO     | did not find any defunct processes belonging to 3769914
[2025-11-27 23:54:33] 2025-11-28 04:53:49,121 | INFO     | did not find any defunct processes belonging to 3769914
[2025-11-27 23:54:33] 2025-11-28 04:53:49,136 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:54:33] 2025-11-28 04:53:49,136 | INFO     | ready for new job
[2025-11-27 23:54:33] 2025-11-28 04:53:49,136 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:54:33] 2025-11-28 04:53:49,154 | INFO     | ***************************************
[2025-11-27 23:54:33] 2025-11-28 04:53:49,154 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:54:33] 2025-11-28 04:53:49,154 | INFO     | ***************************************
[2025-11-27 23:54:33] 2025-11-28 04:53:49,154 | INFO     | 
[2025-11-27 23:54:33] 2025-11-28 04:53:49,189 | INFO     | architecture information:
[2025-11-27 23:54:33] 2025-11-28 04:53:49,212 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:54:33] 2025-11-28 04:53:49,267 | INFO     | cat /etc/os-release:
[2025-11-27 23:54:33] NAME="CentOS Linux"
[2025-11-27 23:54:33] VERSION="7 (Core)"
[2025-11-27 23:54:33] ID="centos"
[2025-11-27 23:54:33] ID_LIKE="rhel fedora"
[2025-11-27 23:54:33] VERSION_ID="7"
[2025-11-27 23:54:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:54:33] ANSI_COLOR="0;31"
[2025-11-27 23:54:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:54:33] HOME_URL="https://www.centos.org/"
[2025-11-27 23:54:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:54:33] 
[2025-11-27 23:54:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:54:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:54:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:54:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:54:33] 
[2025-11-27 23:54:33] 2025-11-28 04:53:49,267 | INFO     | ***************************************
[2025-11-27 23:54:33] 2025-11-28 04:53:49,772 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 23:54:33] 2025-11-28 04:53:49,870 | INFO     | sufficient remaining disk space (88271224832 B)
[2025-11-27 23:54:33] 2025-11-28 04:53:49,870 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:54:33] 2025-11-28 04:53:49,871 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:54:33] 2025-11-28 04:53:49,871 | INFO     | update_server=False
[2025-11-27 23:54:33] 2025-11-28 04:53:49,871 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:54:33] 2025-11-28 04:53:49,872 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:54:33] 2025-11-28 04:53:49,892 | INFO     | all payload control threads have been joined
[2025-11-27 23:54:33] 2025-11-28 04:53:50,301 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:54:33] 2025-11-28 04:53:50,364 | INFO     | all data control threads have been joined
[2025-11-27 23:54:33] 2025-11-28 04:53:50,465 | INFO     | all job control threads have been joined
[2025-11-27 23:54:33] 2025-11-28 04:53:50,806 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:54:33] 2025-11-28 04:53:50,806 | INFO     | aborting loop
[2025-11-27 23:54:33] 2025-11-28 04:53:50,878 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:54:33] 2025-11-28 04:53:50,897 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:54:33] 2025-11-28 04:53:50,904 | INFO     | [payload] control thread has finished
[2025-11-27 23:54:33] 2025-11-28 04:53:51,309 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:54:33] 2025-11-28 04:53:51,370 | INFO     | [data] control thread has finished
[2025-11-27 23:54:33] 2025-11-28 04:53:51,431 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:54:33] 2025-11-28 04:53:51,471 | INFO     | [job] control thread has finished
[2025-11-27 23:54:33] 2025-11-28 04:53:51,677 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:54:33] 2025-11-28 04:53:51,745 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:54:33] 2025-11-28 04:53:51,820 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:54:33] 2025-11-28 04:53:51,856 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:54:33] 2025-11-28 04:53:51,868 | INFO     | [job] validate thread has finished
[2025-11-27 23:54:33] 2025-11-28 04:53:51,925 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:54:33] 2025-11-28 04:53:52,141 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:54:33] 2025-11-28 04:53:52,218 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:54:33] 2025-11-28 04:53:52,311 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:54:33] 2025-11-28 04:53:55,934 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:54:33] 2025-11-28 04:54:19,849 | INFO     | PID=3737163 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 23:54:33] 2025-11-28 04:54:19,851 | INFO     | .. there are 58 such processes running
[2025-11-27 23:54:33] 2025-11-28 04:54:19,852 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:54:33] 2025-11-28 04:54:19,852 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:54:33] 2025-11-28 04:54:19,852 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:54:33] 2025-11-28 04:54:25,078 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:54:33] 2025-11-28 04:54:25,183 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140320206497600)>', '<ExcThread(monitor, started 140319702103808)>']
[2025-11-27 23:54:33] 2025-11-28 04:54:25,902 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:54:33] 2025-11-28 04:54:25,902 | INFO     | [monitor] control thread has ended
[2025-11-27 23:54:33] 2025-11-28 04:54:30,209 | INFO     | all workflow threads have been joined
[2025-11-27 23:54:33] 2025-11-28 04:54:30,209 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:54:33] 2025-11-28 04:54:30,209 | INFO     | traces error code: 0
[2025-11-27 23:54:33] 2025-11-28 04:54:30,209 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:54:33] 2025-11-28 04:54:31,683 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:54:33] 2025-11-28 04:54:31,717 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:54:33] 2025-11-28 04:54:31,790 [wrapper] pilotpid: 3737163
[2025-11-27 23:54:33] 2025-11-28 04:54:31,834 [wrapper] Pilot exit status: 0
[2025-11-27 23:54:33] 2025-11-28 04:54:32,001 [wrapper] pandaids: 6898040239
[2025-11-27 23:54:33] 2025-11-28 04:54:32,846 [wrapper] cleanup supervisor_pilot  963880 3737164
[2025-11-27 23:54:33] 2025-11-28 04:54:32,901 [wrapper] Test setup, not cleaning
[2025-11-27 23:54:33] 2025-11-28 04:54:32,937 [wrapper] apfmon messages muted
[2025-11-27 23:54:33] 2025-11-28 04:54:32,966 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:54:33] 2025-11-28 04:54:32,991 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:54:33]  *** Error codes and diagnostics ***
[2025-11-27 23:54:33]     "exeErrorCode": 0,
[2025-11-27 23:54:33]     "exeErrorDiag": "",
[2025-11-27 23:54:33]     "pilotErrorCode": 0,
[2025-11-27 23:54:33]     "pilotErrorDiag": "",
[2025-11-27 23:54:33]  *** Listing of results directory ***
[2025-11-27 23:54:33] total 1314112
[2025-11-27 23:54:33] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 21:38 pilot3.tar.gz
[2025-11-27 23:54:33] -rwx------. 1 boincer umatlas     36292 Nov 25 22:12 runpilot2-wrapper.sh
[2025-11-27 23:54:33] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:12 queuedata.json
[2025-11-27 23:54:33] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:54:33] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:01 run_atlas
[2025-11-27 23:54:33] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:01 job.xml
[2025-11-27 23:54:33] -rw-r--r--. 2 boincer umatlas 408724157 Nov 27 00:01 EVNT.47483658._002411.pool.root.1
[2025-11-27 23:54:33] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:01 shared
[2025-11-27 23:54:33] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 00:01 input.tar.gz
[2025-11-27 23:54:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 23:54:33] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:01 boinc_lockfile
[2025-11-27 23:54:33] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:01 pandaJob.out
[2025-11-27 23:54:33] -rw-------. 1 boincer umatlas        57 Nov 27 00:01 setup.sh.local
[2025-11-27 23:54:33] -rw-------. 1 boincer umatlas    991570 Nov 27 00:02 agis_schedconf.cvmfs.json
[2025-11-27 23:54:33] drwx------. 5 boincer umatlas      4096 Nov 27 00:02 pilot3
[2025-11-27 23:54:33] -rw-r--r--. 1 boincer umatlas       533 Nov 27 23:29 boinc_task_state.xml
[2025-11-27 23:54:33] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 23:46 init_data.xml
[2025-11-27 23:54:33] -rw-------. 1 boincer umatlas 909147803 Nov 27 23:51 HITS.47556161._003933.pool.root.1
[2025-11-27 23:54:33] -rw-------. 1 boincer umatlas      1059 Nov 27 23:52 memory_monitor_summary.json
[2025-11-27 23:54:33] -rw-------. 1 boincer umatlas   1516240 Nov 27 23:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:54:33] -rw-------. 1 boincer umatlas   2463174 Nov 27 23:52 log.47556161._003933.job.log.tgz.1
[2025-11-27 23:54:33] -rw-------. 1 boincer umatlas      7959 Nov 27 23:53 heartbeat.json
[2025-11-27 23:54:33] -rw-------. 1 boincer umatlas        95 Nov 27 23:54 pilot_heartbeat.json
[2025-11-27 23:54:33] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 23:54 boinc_mmap_file
[2025-11-27 23:54:33] -rw-r--r--. 1 boincer umatlas        29 Nov 27 23:54 wrapper_checkpoint.txt
[2025-11-27 23:54:33] -rw-------. 1 boincer umatlas      4824 Nov 27 23:54 pilotlog.txt
[2025-11-27 23:54:33] -rw-------. 1 boincer umatlas   9462963 Nov 27 23:54 log.47556161._003933.job.log.1
[2025-11-27 23:54:33] -rw-------. 1 boincer umatlas       353 Nov 27 23:54 output.list
[2025-11-27 23:54:33] -rw-r--r--. 1 boincer umatlas       620 Nov 27 23:54 runtime_log
[2025-11-27 23:54:33] -rw-------. 1 boincer umatlas  11950080 Nov 27 23:54 result.tar.gz
[2025-11-27 23:54:33] -rw-r--r--. 1 boincer umatlas      9353 Nov 27 23:54 runtime_log.err
[2025-11-27 23:54:33] -rw-------. 1 boincer umatlas       662 Nov 27 23:54 hblNDmg8Ki8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXnMKDmh5ddYm.diag
[2025-11-27 23:54:33] -rw-r--r--. 1 boincer umatlas     21815 Nov 27 23:54 stderr.txt
[2025-11-27 23:54:33] HITS file was successfully produced:
[2025-11-27 23:54:33] -rw-------. 1 boincer umatlas 909147803 Nov 27 23:51 shared/HITS.pool.root.1
[2025-11-27 23:54:33]  *** Contents of shared directory: ***
[2025-11-27 23:54:33] total 1299264
[2025-11-27 23:54:33] -rw-r--r--. 2 boincer umatlas 408724157 Nov 27 00:01 ATLAS.root_0
[2025-11-27 23:54:33] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 00:01 input.tar.gz
[2025-11-27 23:54:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 23:54:33] -rw-------. 1 boincer umatlas 909147803 Nov 27 23:51 HITS.pool.root.1
[2025-11-27 23:54:33] -rw-------. 1 boincer umatlas  11950080 Nov 27 23:54 result.tar.gz
23:54:35 (3725684): run_atlas exited; CPU time 272098.557128
23:54:35 (3725684): called boinc_finish(0)

</stderr_txt>
]]>

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