Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-27 05:26:14 (5316): vboxwrapper version 26210
2025-11-27 05:26:14 (5316): BOINC client version: 8.0.2
2025-11-27 05:26:15 (5316): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-27 05:26:15 (5316): Successfully copied 'init_data.xml' to the shared directory.
2025-11-27 05:26:16 (5316): Create VM. (boinc_21370a003b3f4be2, slot#3)
2025-11-27 05:26:16 (5316): Setting Memory Size for VM. (4700MB)
2025-11-27 05:26:16 (5316): Setting CPU Count for VM. (7)
2025-11-27 05:26:17 (5316): Setting Chipset Options for VM.
2025-11-27 05:26:17 (5316): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-27 05:26:17 (5316): Setting Boot Options for VM.
2025-11-27 05:26:18 (5316): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-27 05:26:18 (5316): Enabling VM Network Access.
2025-11-27 05:26:18 (5316): Disabling USB Support for VM.
2025-11-27 05:26:18 (5316): Disabling COM Port Support for VM.
2025-11-27 05:26:19 (5316): Disabling LPT Port Support for VM.
2025-11-27 05:26:19 (5316): Disabling Audio Support for VM.
2025-11-27 05:26:19 (5316): Disabling Clipboard Support for VM.
2025-11-27 05:26:19 (5316): Disabling Drag and Drop Support for VM.
2025-11-27 05:26:20 (5316): Adding storage controller(s) to VM.
2025-11-27 05:26:20 (5316): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-27 05:26:20 (5316): Adding VirtualBox Guest Additions to VM.
2025-11-27 05:26:21 (5316): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-27 05:26:21 (5316): forwarding host port 49543 to guest port 80
2025-11-27 05:26:21 (5316): Enabling remote desktop for VM.
2025-11-27 05:26:21 (5316): Required extension pack not installed, remote desktop not enabled.
2025-11-27 05:26:21 (5316): Enabling shared directory for VM.
2025-11-27 05:26:22 (5316): Starting VM using VBoxManage interface. (boinc_21370a003b3f4be2, slot#3)
2025-11-27 05:26:26 (5316): Successfully started VM. (PID = '4348')
2025-11-27 05:26:26 (5316): Reporting VM Process ID to BOINC.
2025-11-27 05:26:26 (5316): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-27 05:26:26 (5316): Guest Log: CPUID EDX: 0x178bfbff
2025-11-27 05:26:26 (5316): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-27 05:26:26 (5316): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-27 05:26:26 (5316): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-27 05:26:26 (5316): Detected: Web Application Enabled (http://localhost:49543)
2025-11-27 05:26:26 (5316): Preference change detected
2025-11-27 05:26:26 (5316): Setting CPU throttle for VM. (100%)
2025-11-27 05:26:26 (5316): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 05:26:28 (5316): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-27 05:26:28 (5316): Guest Log: BIOS: Booting from Hard Disk...
2025-11-27 05:26:31 (5316): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-27 05:26:31 (5316): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-27 05:26:31 (5316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-27 05:26:36 (5316): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-27 05:26:36 (5316): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-27 05:26:41 (5316): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-27 05:26:41 (5316): Guest Log: 00:00:00.000134 main     Log opened 2025-11-27T05:26:40.319241000Z
2025-11-27 05:26:41 (5316): Guest Log: 00:00:00.000211 main     OS Product: Linux
2025-11-27 05:26:41 (5316): Guest Log: 00:00:00.000271 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-27 05:26:41 (5316): Guest Log: 00:00:00.000314 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-27 05:26:41 (5316): Guest Log: 00:00:00.000329 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-27 05:26:41 (5316): Guest Log: 00:00:00.000330 main     Process ID: 1357
2025-11-27 05:26:41 (5316): Guest Log: 00:00:00.000330 main     Package type: LINUX_64BITS_GENERIC
2025-11-27 05:26:41 (5316): Guest Log: 00:00:00.000924 main     5.2.32 r132073 started. Verbose level = 0
2025-11-27 05:26:41 (5316): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-27 05:26:41 (5316): Guest Log: [INFO] Mounting shared directory
2025-11-27 05:26:41 (5316): Guest Log: [INFO] Checking for init_data.xml
2025-11-27 05:26:44 (5316): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-27 05:26:44 (5316): Guest Log: [INFO] Detected branch: prod
2025-11-27 05:26:44 (5316): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-27 05:26:44 (5316): Guest Log: Copying input files
2025-11-27 05:26:46 (5316): Guest Log: Copied input files into RunAtlas.
2025-11-27 05:26:46 (5316): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-27 05:26:46 (5316): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-27 05:26:46 (5316): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-27 05:26:46 (5316): Guest Log: Further information can be found at the LHC@home message board.
2025-11-27 05:26:50 (5316): Guest Log: 00:00:10.011635 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 589 087 171 000ns (GuestNow=1 764 217 611 234 263 000 ns GuestLast=1 764 221 200 321 434 000 ns fSetTimeLastLoop=true )
2025-11-27 05:26:53 (5316): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-27 05:26:53 (5316): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-27 05:26:53 (5316): Guest Log: 2.6.3.0 1634 0 32184 153347 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-27 05:26:55 (5316): Guest Log: copied the webapp to /var/www
2025-11-27 05:26:55 (5316): Guest Log: ATHENA_PROC_NUMBER=7
2025-11-27 05:26:55 (5316): Guest Log: ATHENA_CORE_NUMBER=7
2025-11-27 05:26:55 (5316): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-27 05:26:55 (5316): Guest Log:  *** Starting ATLAS job. (PandaID=6895884190 taskID=47556149) ***
2025-11-27 07:06:29 (5316): Status Report: Elapsed Time: '6000.000000'
2025-11-27 07:06:29 (5316): Status Report: CPU Time: '39425.984375'
2025-11-27 08:46:31 (5316): Status Report: Elapsed Time: '12000.000000'
2025-11-27 08:46:31 (5316): Status Report: CPU Time: '81060.250000'
2025-11-27 10:26:34 (5316): Status Report: Elapsed Time: '18000.000000'
2025-11-27 10:26:34 (5316): Status Report: CPU Time: '122693.625000'
2025-11-27 12:06:36 (5316): Status Report: Elapsed Time: '24000.000000'
2025-11-27 12:06:36 (5316): Status Report: CPU Time: '164321.343750'
2025-11-27 13:46:39 (5316): Status Report: Elapsed Time: '30000.000000'
2025-11-27 13:46:39 (5316): Status Report: CPU Time: '205957.234375'
2025-11-27 14:19:31 (5316): Guest Log:  *** Job finished ***
2025-11-27 14:19:31 (5316): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:01,986 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:01,986 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:14,138 | INFO     | [monitor] cgroup control has ended
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:15,501 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139829772662592)>', '<ExcThread(monitor, started 139828851087104)>']
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:16,572 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:16,572 | INFO     | [monitor] control thread has ended
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:20,631 | INFO     | all workflow threads have been joined
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:20,631 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:20,632 | INFO     | traces error code: 0
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:20,632 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:20,787 [wrapper] ==== pilot stdout END ====
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:20,796 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:20,802 [wrapper] pilotpid: 6056
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:20,806 [wrapper] Pilot exit status: 0
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:20,825 [wrapper] pandaids: 6895884190
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:20,858 [wrapper] cleanup supervisor_pilot 11409 6057
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:20,864 [wrapper] Test setup, not cleaning
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:20,868 [wrapper] apfmon messages muted
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:20,873 [wrapper] ==== wrapper stdout END ====
2025-11-27 14:19:31 (5316): Guest Log: 2025-11-27 13:31:20,876 [wrapper] ==== wrapper stderr END ====
2025-11-27 14:19:31 (5316): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 14:19:31 (5316): Guest Log:     "exeErrorCode": 0,
2025-11-27 14:19:31 (5316): Guest Log:     "exeErrorDiag": "",
2025-11-27 14:19:31 (5316): Guest Log:     "pilotErrorCode": 0,
2025-11-27 14:19:31 (5316): Guest Log:     "pilotErrorDiag": "",
2025-11-27 14:19:31 (5316): Guest Log:  *** Listing of results directory ***
2025-11-27 14:19:31 (5316): Guest Log: total 927876
2025-11-27 14:19:31 (5316): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 24 17:01 pilot3.tar.gz
2025-11-27 14:19:31 (5316): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 24 17:11 queuedata.json
2025-11-27 14:19:31 (5316): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 24 17:15 runpilot2-wrapper.sh
2025-11-27 14:19:31 (5316): Guest Log: -rwxr-xr-x. 1 atlas atlas      9128 Nov 27 04:26 init_data.xml
2025-11-27 14:19:31 (5316): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 27 04:26 start_atlas.sh
2025-11-27 14:19:31 (5316): Guest Log: -rwxr-xr-x. 1 atlas atlas    590103 Nov 27 04:26 input.tar.gz
2025-11-27 14:19:31 (5316): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 27 04:26 EVNT.47483658._001403.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 14:19:31 (5316): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 27 04:26 pandaJob.out
2025-11-27 14:19:31 (5316): Guest Log: -rw-------. 1 atlas atlas    991570 Nov 27 04:27 agis_schedconf.cvmfs.json
2025-11-27 14:19:31 (5316): Guest Log: drwx------. 5 atlas atlas      4096 Nov 27 04:27 pilot3
2025-11-27 14:19:31 (5316): Guest Log: -rw-------. 1 atlas atlas 933891977 Nov 27 13:29 HITS.47556149._003893.pool.root.1
2025-11-27 14:19:31 (5316): Guest Log: -rw-------. 1 atlas atlas      1039 Nov 27 13:30 memory_monitor_summary.json
2025-11-27 14:19:31 (5316): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 13:30 agis_ddmendpoints.agis.ALL.json
2025-11-27 14:19:31 (5316): Guest Log: -rw-------. 1 atlas atlas   1695053 Nov 27 13:30 log.47556149._003893.job.log.tgz.1
2025-11-27 14:19:31 (5316): Guest Log: -rw-------. 1 atlas atlas      8639 Nov 27 13:30 heartbeat.json
2025-11-27 14:19:31 (5316): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 13:31 pilot_heartbeat.json
2025-11-27 14:19:31 (5316): Guest Log: -rw-------. 1 atlas atlas      4877 Nov 27 13:31 pilotlog.txt
2025-11-27 14:19:31 (5316): Guest Log: -rw-------. 1 atlas atlas   4507630 Nov 27 13:31 log.47556149._003893.job.log.1
2025-11-27 14:19:31 (5316): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 13:31 output.list
2025-11-27 14:19:31 (5316): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 13:31 runtime_log
2025-11-27 14:19:31 (5316): Guest Log: -rw-------. 1 atlas atlas   6225920 Nov 27 13:31 result.tar.gz
2025-11-27 14:19:31 (5316): Guest Log: -rw-------. 1 atlas atlas       660 Nov 27 13:31 xmbKDm5Kph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwnLKDmKNTR9m.diag
2025-11-27 14:19:31 (5316): Guest Log: -rw-r--r--. 1 atlas atlas      8744 Nov 27 13:31 runtime_log.err
2025-11-27 14:19:31 (5316): Guest Log: Looking for outputfile HITS.47556149._003893.pool.root.1
2025-11-27 14:19:31 (5316): Guest Log: HITS file was successfully produced
2025-11-27 14:19:31 (5316): Guest Log: -rw-------. 1 atlas atlas 933891977 Nov 27 13:29 /home/atlas/RunAtlas/HITS.47556149._003893.pool.root.1
2025-11-27 14:19:35 (5316): Guest Log: Successfully finished the ATLAS job!
2025-11-27 14:19:35 (5316): Guest Log: Copying the results back to the shared directory!
2025-11-27 14:19:35 (5316): Guest Log:  *** Contents of shared directory: ***
2025-11-27 14:19:35 (5316): Guest Log: total 1320256
2025-11-27 14:19:35 (5316): Guest Log: -rwxrwxrwx. 1 root root 411199484 Nov 27 04:26 ATLAS.root_0
2025-11-27 14:19:35 (5316): Guest Log: -rwxrwxrwx. 1 root root 933891977 Nov 27 13:19 HITS.pool.root.1
2025-11-27 14:19:35 (5316): Guest Log: -rwxrwxrwx. 1 root root      9128 Nov 27 04:26 init_data.xml
2025-11-27 14:19:35 (5316): Guest Log: -rwxrwxrwx. 1 root root    590103 Nov 27 04:25 input.tar.gz
2025-11-27 14:19:35 (5316): Guest Log: -rwxrwxrwx. 1 root root   6225920 Nov 27 13:19 result.tar.gz
2025-11-27 14:19:35 (5316): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 27 04:25 start_atlas.sh
2025-11-27 14:19:35 (5316): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 14:19:35 (5316): VM Completion File Detected.
2025-11-27 14:19:35 (5316): Powering off VM.
2025-11-27 14:19:35 (5316): Successfully stopped VM.
2025-11-27 14:19:35 (5316): Deregistering VM. (boinc_21370a003b3f4be2, slot#3)
2025-11-27 14:19:35 (5316): Removing network bandwidth throttle group from VM.
2025-11-27 14:19:36 (5316): Removing VM from VirtualBox.
2025-11-27 14:19:41 (5316): called boinc_finish(0)

</stderr_txt>
]]>

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