Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:29 (3725542): wrapper (7.7.26015): starting
00:01:29 (3725542): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:01:29] Arguments: --nthreads 9
[2025-11-27 00:01:29] Threads: 9
[2025-11-27 00:01:29] Checking for CVMFS
[2025-11-27 00:01:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:01:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:01:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:01:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:01:31] 2.13.3.0 11883 30908 364612 153347 0 238 24234984 32935936 47025 16776704 0 163468610 99.605 178068590 34147 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:01:31] CVMFS is ok
[2025-11-27 00:01:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:01:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:01:31] Further information can be found at the LHC@home message board.
[2025-11-27 00:01:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:01:31] Checking for apptainer binary...
[2025-11-27 00:01:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:01:31] Running /usr/bin/apptainer --version
[2025-11-27 00:01:31] apptainer version 1.4.4-1.el9
[2025-11-27 00:01:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:01:32] c6-12-29-2.aglt2.org
[2025-11-27 00:01:32] apptainer works
[2025-11-27 00:01:32] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:01:32] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:01:32] Starting ATLAS job with PandaID=6897139438
[2025-11-27 00:01:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 05:59:26]  *** The last 200 lines of the pilot log: ***
[2025-11-28 05:59:26] 2025-11-28 10:58:11,349 | INFO     | PID=3737835 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 05:59:26] 2025-11-28 10:58:11,350 | INFO     | .. there are 61 such processes running
[2025-11-28 05:59:26] 2025-11-28 10:58:12,362 | INFO     | time since job start (107721s) is within the limit (172800.0s)
[2025-11-28 05:59:26] 2025-11-28 10:58:13,496 | INFO     | monitor loop #5436: job 0:6897139438 is in state 'finished'
[2025-11-28 05:59:26] 2025-11-28 10:58:13,496 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:59:26] 2025-11-28 10:58:14,378 | INFO     | time since job start (107723s) is within the limit (172800.0s)
[2025-11-28 05:59:26] 2025-11-28 10:58:16,001 | INFO     | monitor loop #5437: job 0:6897139438 is in state 'finished'
[2025-11-28 05:59:26] 2025-11-28 10:58:16,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:59:26] 2025-11-28 10:58:16,392 | INFO     | time since job start (107725s) is within the limit (172800.0s)
[2025-11-28 05:59:26] 2025-11-28 10:58:18,402 | INFO     | time since job start (107727s) is within the limit (172800.0s)
[2025-11-28 05:59:26] 2025-11-28 10:58:18,530 | INFO     | monitor loop #5438: job 0:6897139438 is in state 'finished'
[2025-11-28 05:59:26] 2025-11-28 10:58:18,530 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:59:26] 2025-11-28 10:58:20,414 | INFO     | time since job start (107729s) is within the limit (172800.0s)
[2025-11-28 05:59:26] 2025-11-28 10:58:21,068 | INFO     | monitor loop #5439: job 0:6897139438 is in state 'finished'
[2025-11-28 05:59:26] 2025-11-28 10:58:21,068 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:59:26] 2025-11-28 10:58:21,374 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 05:59:26] 2025-11-28 10:58:21,406 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2592.006177083333
[2025-11-28 05:59:26] 2025-11-28 10:58:21,446 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6897139438/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 05:59:26] 2025-11-28 10:58:21,447 | INFO     | extracted standard info from prmon json
[2025-11-28 05:59:26] 2025-11-28 10:58:21,453 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 05:59:26] 2025-11-28 10:58:21,453 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 05:59:26] 2025-11-28 10:58:21,660 | INFO     | fitting pss+swap vs Time
[2025-11-28 05:59:26] 2025-11-28 10:58:21,676 | INFO     | sum of square deviations: 1699186647683.361
[2025-11-28 05:59:26] 2025-11-28 10:58:22,185 | INFO     | sum of deviations: 6037517510078.328
[2025-11-28 05:59:26] 2025-11-28 10:58:22,202 | INFO     | mean x: 1764273674.4446964
[2025-11-28 05:59:26] 2025-11-28 10:58:22,202 | INFO     | mean y: 3044661.747022121
[2025-11-28 05:59:26] 2025-11-28 10:58:22,202 | INFO     | intersect: -6265738827.431518
[2025-11-28 05:59:26] 2025-11-28 10:58:22,213 | INFO     | chi2: 35.948362565941736
[2025-11-28 05:59:26] 2025-11-28 10:58:22,215 | INFO     | sum of square deviations: 1684773022770.7112
[2025-11-28 05:59:26] 2025-11-28 10:58:22,585 | INFO     | time since job start (107731s) is within the limit (172800.0s)
[2025-11-28 05:59:26] 2025-11-28 10:58:22,781 | INFO     | sum of deviations: 6758648824020.975
[2025-11-28 05:59:26] 2025-11-28 10:58:22,868 | INFO     | mean x: 1764273521.956769
[2025-11-28 05:59:26] 2025-11-28 10:58:22,868 | INFO     | mean y: 3052290.0654152445
[2025-11-28 05:59:26] 2025-11-28 10:58:22,868 | INFO     | intersect: -7074521367.194688
[2025-11-28 05:59:26] 2025-11-28 10:58:22,871 | INFO     | chi2: 31.563140849266745
[2025-11-28 05:59:26] 2025-11-28 10:58:22,871 | INFO     | current chi2=31.563140849266745 (change=12.198668878536475 %)
[2025-11-28 05:59:26] 2025-11-28 10:58:22,871 | INFO     | right removable region: 1757
[2025-11-28 05:59:26] 2025-11-28 10:58:22,878 | INFO     | sum of square deviations: 1684768350101.7998
[2025-11-28 05:59:26] 2025-11-28 10:58:23,201 | INFO     | sum of deviations: 5295019260343.165
[2025-11-28 05:59:26] 2025-11-28 10:58:23,202 | INFO     | mean x: 1764273826.9573379
[2025-11-28 05:59:26] 2025-11-28 10:58:23,202 | INFO     | mean y: 3052514.7354948805
[2025-11-28 05:59:26] 2025-11-28 10:58:23,202 | INFO     | intersect: -5541842659.54409
[2025-11-28 05:59:26] 2025-11-28 10:58:23,227 | INFO     | chi2: 31.96052838201309
[2025-11-28 05:59:26] 2025-11-28 10:58:23,227 | INFO     | current chi2=31.96052838201309 (change=11.093229007617737 %)
[2025-11-28 05:59:26] 2025-11-28 10:58:23,227 | INFO     | left removable region: 10
[2025-11-28 05:59:26] 2025-11-28 10:58:23,252 | INFO     | sum of square deviations: 1653341223974.3484
[2025-11-28 05:59:26] 2025-11-28 10:58:23,519 | INFO     | sum of deviations: 5456257936147.641
[2025-11-28 05:59:26] 2025-11-28 10:58:23,523 | INFO     | mean x: 1764273796.484831
[2025-11-28 05:59:26] 2025-11-28 10:58:23,523 | INFO     | mean y: 3068662.7029192904
[2025-11-28 05:59:26] 2025-11-28 10:58:23,523 | INFO     | intersect: -5819282322.091155
[2025-11-28 05:59:26] 2025-11-28 10:58:23,546 | INFO     | chi2: 23.726530455840567
[2025-11-28 05:59:26] 2025-11-28 10:58:23,546 | INFO     | current memory leak: 3.30 B/s (using 1747 data points, chi2=23.73)
[2025-11-28 05:59:26] 2025-11-28 10:58:23,549 | INFO     | could have reported an average CPU frequency of 2641 MHz (62 samples)
[2025-11-28 05:59:26] 2025-11-28 10:58:23,549 | INFO     | ..............................
[2025-11-28 05:59:26] 2025-11-28 10:58:23,549 | INFO     | . Timing measurements:
[2025-11-28 05:59:26] 2025-11-28 10:58:23,549 | INFO     | . get job = 0 s
[2025-11-28 05:59:26] 2025-11-28 10:58:23,549 | INFO     | . initial setup = 5 s
[2025-11-28 05:59:26] 2025-11-28 10:58:23,549 | INFO     | . payload setup = 45 s
[2025-11-28 05:59:26] 2025-11-28 10:58:23,549 | INFO     | . stage-in = 0 s
[2025-11-28 05:59:26] 2025-11-28 10:58:23,549 | INFO     | . payload execution = 107534 s
[2025-11-28 05:59:26] 2025-11-28 10:58:23,550 | INFO     | . stage-out = 32 s
[2025-11-28 05:59:26] 2025-11-28 10:58:23,550 | INFO     | . log creation = 18 s
[2025-11-28 05:59:26] 2025-11-28 10:58:23,550 | INFO     | ..............................
[2025-11-28 05:59:26] 2025-11-28 10:58:23,793 | INFO     | 
[2025-11-28 05:59:26] 2025-11-28 10:58:23,793 | INFO     | job summary report
[2025-11-28 05:59:26] 2025-11-28 10:58:23,793 | INFO     | --------------------------------------------------
[2025-11-28 05:59:26] 2025-11-28 10:58:23,793 | INFO     | PanDA job id: 6897139438
[2025-11-28 05:59:26] 2025-11-28 10:58:23,793 | INFO     | task id: 47556161
[2025-11-28 05:59:26] 2025-11-28 10:58:23,793 | INFO     | errors: (none)
[2025-11-28 05:59:26] 2025-11-28 10:58:23,793 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 05:59:26] 2025-11-28 10:58:23,794 | INFO     | pilot state: finished 
[2025-11-28 05:59:26] 2025-11-28 10:58:23,794 | INFO     | transexitcode: 0
[2025-11-28 05:59:26] 2025-11-28 10:58:23,794 | INFO     | exeerrorcode: 0
[2025-11-28 05:59:26] 2025-11-28 10:58:23,794 | INFO     | exeerrordiag: 
[2025-11-28 05:59:26] 2025-11-28 10:58:23,794 | INFO     | exitcode: 0
[2025-11-28 05:59:26] 2025-11-28 10:58:23,794 | INFO     | exitmsg: OK
[2025-11-28 05:59:26] 2025-11-28 10:58:23,794 | INFO     | cpuconsumptiontime: 279809 s
[2025-11-28 05:59:26] 2025-11-28 10:58:23,794 | INFO     | nevents: 1000
[2025-11-28 05:59:26] 2025-11-28 10:58:23,794 | INFO     | neventsw: 0
[2025-11-28 05:59:26] 2025-11-28 10:58:23,794 | INFO     | pid: 3770121
[2025-11-28 05:59:26] 2025-11-28 10:58:23,794 | INFO     | pgrp: 3770121
[2025-11-28 05:59:26] 2025-11-28 10:58:23,794 | INFO     | corecount: 9
[2025-11-28 05:59:26] 2025-11-28 10:58:23,794 | INFO     | event service: False
[2025-11-28 05:59:26] 2025-11-28 10:58:23,795 | INFO     | sizes: {0: 2283437, 1: 2284179, 2: 2284321, 3: 2284321, 14: 2284349, 25: 2284377, 36: 2284823, 107582: 2358024, 107584: 2358023, 107618: 2367073, 107620: 2367129, 
[2025-11-28 05:59:26] 2025-11-28 10:58:23,795 | INFO     | --------------------------------------------------
[2025-11-28 05:59:26] 2025-11-28 10:58:23,795 | INFO     | 
[2025-11-28 05:59:26] 2025-11-28 10:58:23,795 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-28 05:59:26] 2025-11-28 10:58:24,101 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,101 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,102 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,102 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,102 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,102 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,102 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,102 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,102 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,102 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,102 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,102 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,102 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,102 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,103 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,103 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,103 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,103 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 05:59:26] 2025-11-28 10:58:24,103 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,103 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 05:59:26] 2025-11-28 10:58:24,103 | INFO     | job 6897139438 has completed (purged errors)
[2025-11-28 05:59:26] 2025-11-28 10:58:24,103 | INFO     | overall cleanup function is called
[2025-11-28 05:59:26] 2025-11-28 10:58:25,215 | INFO     | --- collectZombieJob: --- 10, [3770121]
[2025-11-28 05:59:26] 2025-11-28 10:58:25,215 | INFO     | zombie collector waiting for pid 3770121
[2025-11-28 05:59:26] 2025-11-28 10:58:25,215 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 05:59:26] 2025-11-28 10:58:25,215 | INFO     | collected zombie processes
[2025-11-28 05:59:26] 2025-11-28 10:58:25,215 | INFO     | will attempt to kill all subprocesses of pid=3770121
[2025-11-28 05:59:26] 2025-11-28 10:58:29,947 | INFO     | process IDs to be killed: [3770121] (in reverse order)
[2025-11-28 05:59:26] 2025-11-28 10:58:31,971 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 05:59:26] 2025-11-28 10:58:31,972 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 05:59:26] 2025-11-28 10:58:32,021 | INFO     | did not find any defunct processes belonging to 3770121
[2025-11-28 05:59:26] 2025-11-28 10:58:32,085 | INFO     | did not find any defunct processes belonging to 3770121
[2025-11-28 05:59:26] 2025-11-28 10:58:32,133 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 05:59:26] 2025-11-28 10:58:32,133 | INFO     | ready for new job
[2025-11-28 05:59:26] 2025-11-28 10:58:32,133 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 05:59:26] 2025-11-28 10:58:32,172 | INFO     | ***************************************
[2025-11-28 05:59:26] 2025-11-28 10:58:32,172 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 05:59:26] 2025-11-28 10:58:32,172 | INFO     | ***************************************
[2025-11-28 05:59:26] 2025-11-28 10:58:32,172 | INFO     | 
[2025-11-28 05:59:26] 2025-11-28 10:58:32,203 | INFO     | architecture information:
[2025-11-28 05:59:26] 2025-11-28 10:58:32,214 | INFO     | executing command: cat /etc/os-release
[2025-11-28 05:59:26] 2025-11-28 10:58:32,270 | INFO     | cat /etc/os-release:
[2025-11-28 05:59:26] NAME="CentOS Linux"
[2025-11-28 05:59:26] VERSION="7 (Core)"
[2025-11-28 05:59:26] ID="centos"
[2025-11-28 05:59:26] ID_LIKE="rhel fedora"
[2025-11-28 05:59:26] VERSION_ID="7"
[2025-11-28 05:59:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 05:59:26] ANSI_COLOR="0;31"
[2025-11-28 05:59:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 05:59:26] HOME_URL="https://www.centos.org/"
[2025-11-28 05:59:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 05:59:26] 
[2025-11-28 05:59:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 05:59:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 05:59:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 05:59:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 05:59:26] 
[2025-11-28 05:59:26] 2025-11-28 10:58:32,270 | INFO     | ***************************************
[2025-11-28 05:59:26] 2025-11-28 10:58:32,774 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-28 05:59:26] 2025-11-28 10:58:32,854 | INFO     | sufficient remaining disk space (86580920320 B)
[2025-11-28 05:59:26] 2025-11-28 10:58:32,854 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 05:59:26] 2025-11-28 10:58:32,854 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 05:59:26] 2025-11-28 10:58:32,854 | INFO     | update_server=False
[2025-11-28 05:59:26] 2025-11-28 10:58:32,854 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 05:59:26] 2025-11-28 10:58:32,854 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 05:59:26] 2025-11-28 10:58:32,855 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:59:26] 2025-11-28 10:58:32,855 | INFO     | aborting loop
[2025-11-28 05:59:26] 2025-11-28 10:58:32,855 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 05:59:26] 2025-11-28 10:58:32,864 | INFO     | all payload control threads have been joined
[2025-11-28 05:59:26] 2025-11-28 10:58:32,949 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:59:26] 2025-11-28 10:58:33,270 | INFO     | all data control threads have been joined
[2025-11-28 05:59:26] 2025-11-28 10:58:33,270 | INFO     | all job control threads have been joined
[2025-11-28 05:59:26] 2025-11-28 10:58:33,870 | INFO     | [payload] control thread has finished
[2025-11-28 05:59:26] 2025-11-28 10:58:33,878 | INFO     | [job] retrieve thread has finished
[2025-11-28 05:59:26] 2025-11-28 10:58:33,879 | INFO     | [job] job monitor thread has finished
[2025-11-28 05:59:26] 2025-11-28 10:58:33,977 | INFO     | [job] queue monitor thread has finished
[2025-11-28 05:59:26] 2025-11-28 10:58:34,036 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 05:59:26] 2025-11-28 10:58:34,062 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 05:59:26] 2025-11-28 10:58:34,067 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 05:59:26] 2025-11-28 10:58:34,276 | INFO     | [data] control thread has finished
[2025-11-28 05:59:26] 2025-11-28 10:58:34,276 | INFO     | [job] control thread has finished
[2025-11-28 05:59:26] 2025-11-28 10:58:34,772 | INFO     | [data] copytool_in thread has finished
[2025-11-28 05:59:26] 2025-11-28 10:58:34,817 | INFO     | [job] validate thread has finished
[2025-11-28 05:59:26] 2025-11-28 10:58:34,885 | INFO     | [data] copytool_out thread has finished
[2025-11-28 05:59:26] 2025-11-28 10:58:34,950 | INFO     | [payload] failed_post thread has finished
[2025-11-28 05:59:26] 2025-11-28 10:58:34,974 | INFO     | [payload] validate_post thread has finished
[2025-11-28 05:59:26] 2025-11-28 10:58:35,380 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 05:59:26] 2025-11-28 10:58:36,900 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 05:59:26] 2025-11-28 10:58:54,705 | INFO     | 107739s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-28 05:59:26] 2025-11-28 10:59:00,621 | INFO     | PID=3737835 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 05:59:26] 2025-11-28 10:59:00,621 | INFO     | .. there are 61 such processes running
[2025-11-28 05:59:26] 2025-11-28 10:59:00,621 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 05:59:26] 2025-11-28 10:59:00,626 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 05:59:26] 2025-11-28 10:59:00,626 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 05:59:26] 2025-11-28 10:59:14,296 | INFO     | [monitor] cgroup control has ended
[2025-11-28 05:59:26] 2025-11-28 10:59:15,957 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140159176062784)>', '<ExcThread(monitor, started 140158464681728)>']
[2025-11-28 05:59:26] 2025-11-28 10:59:16,728 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 05:59:26] 2025-11-28 10:59:16,728 | INFO     | [monitor] control thread has ended
[2025-11-28 05:59:26] 2025-11-28 10:59:20,994 | INFO     | all workflow threads have been joined
[2025-11-28 05:59:26] 2025-11-28 10:59:20,994 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 05:59:26] 2025-11-28 10:59:20,994 | INFO     | traces error code: 0
[2025-11-28 05:59:26] 2025-11-28 10:59:20,995 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 05:59:26] 2025-11-28 10:59:24,480 [wrapper] ==== pilot stdout END ====
[2025-11-28 05:59:26] 2025-11-28 10:59:24,495 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 05:59:26] 2025-11-28 10:59:24,538 [wrapper] pilotpid: 3737835
[2025-11-28 05:59:26] 2025-11-28 10:59:24,595 [wrapper] Pilot exit status: 0
[2025-11-28 05:59:26] 2025-11-28 10:59:24,693 [wrapper] pandaids: 6897139438
[2025-11-28 05:59:26] 2025-11-28 10:59:25,611 [wrapper] cleanup supervisor_pilot 2321326 3737836
[2025-11-28 05:59:26] 2025-11-28 10:59:25,674 [wrapper] Test setup, not cleaning
[2025-11-28 05:59:26] 2025-11-28 10:59:25,713 [wrapper] apfmon messages muted
[2025-11-28 05:59:26] 2025-11-28 10:59:25,765 [wrapper] ==== wrapper stdout END ====
[2025-11-28 05:59:26] 2025-11-28 10:59:25,788 [wrapper] ==== wrapper stderr END ====
[2025-11-28 05:59:26]  *** Error codes and diagnostics ***
[2025-11-28 05:59:26]     "exeErrorCode": 0,
[2025-11-28 05:59:26]     "exeErrorDiag": "",
[2025-11-28 05:59:26]     "pilotErrorCode": 0,
[2025-11-28 05:59:26]     "pilotErrorDiag": "",
[2025-11-28 05:59:26]  *** Listing of results directory ***
[2025-11-28 05:59:26] total 1333788
[2025-11-28 05:59:26] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-28 05:59:26] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-28 05:59:26] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-28 05:59:26] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 05:59:26] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:01 run_atlas
[2025-11-28 05:59:26] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:01 job.xml
[2025-11-28 05:59:26] -rw-r--r--. 2 boincer umatlas 407644338 Nov 27 00:01 EVNT.47483658._002179.pool.root.1
[2025-11-28 05:59:26] -rw-r--r--. 2 boincer umatlas    590111 Nov 27 00:01 input.tar.gz
[2025-11-28 05:59:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-28 05:59:26] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:01 shared
[2025-11-28 05:59:26] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:01 boinc_lockfile
[2025-11-28 05:59:26] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 00:01 pandaJob.out
[2025-11-28 05:59:26] -rw-------. 1 boincer umatlas        57 Nov 27 00:01 setup.sh.local
[2025-11-28 05:59:26] -rw-------. 1 boincer umatlas    991570 Nov 27 00:02 agis_schedconf.cvmfs.json
[2025-11-28 05:59:26] drwx------. 5 boincer umatlas      4096 Nov 27 00:02 pilot3
[2025-11-28 05:59:26] -rw-r--r--. 1 boincer umatlas       533 Nov 28 05:14 boinc_task_state.xml
[2025-11-28 05:59:26] -rw-------. 1 boincer umatlas 924245601 Nov 28 05:53 HITS.47556161._001625.pool.root.1
[2025-11-28 05:59:26] -rw-r--r--. 1 boincer umatlas      6881 Nov 28 05:54 init_data.xml
[2025-11-28 05:59:26] -rw-------. 1 boincer umatlas      1060 Nov 28 05:56 memory_monitor_summary.json
[2025-11-28 05:59:26] -rw-------. 1 boincer umatlas   1516240 Nov 28 05:57 agis_ddmendpoints.agis.ALL.json
[2025-11-28 05:59:26] -rw-------. 1 boincer umatlas   2736207 Nov 28 05:57 log.47556161._001625.job.log.tgz.1
[2025-11-28 05:59:26] -rw-------. 1 boincer umatlas        95 Nov 28 05:58 pilot_heartbeat.json
[2025-11-28 05:59:26] -rw-------. 1 boincer umatlas      8628 Nov 28 05:58 heartbeat.json
[2025-11-28 05:59:26] -rw-------. 1 boincer umatlas      4941 Nov 28 05:59 pilotlog.txt
[2025-11-28 05:59:26] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 05:59 boinc_mmap_file
[2025-11-28 05:59:26] -rw-r--r--. 1 boincer umatlas        29 Nov 28 05:59 wrapper_checkpoint.txt
[2025-11-28 05:59:26] -rw-------. 1 boincer umatlas  12256861 Nov 28 05:59 log.47556161._001625.job.log.1
[2025-11-28 05:59:26] -rw-------. 1 boincer umatlas       353 Nov 28 05:59 output.list
[2025-11-28 05:59:26] -rw-r--r--. 1 boincer umatlas       620 Nov 28 05:59 runtime_log
[2025-11-28 05:59:26] -rw-------. 1 boincer umatlas  15011840 Nov 28 05:59 result.tar.gz
[2025-11-28 05:59:26] -rw-------. 1 boincer umatlas       665 Nov 28 05:59 TYEMDmUWBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzTMKDm5SYoJm.diag
[2025-11-28 05:59:26] -rw-r--r--. 1 boincer umatlas      9354 Nov 28 05:59 runtime_log.err
[2025-11-28 05:59:26] -rw-r--r--. 1 boincer umatlas     21910 Nov 28 05:59 stderr.txt
[2025-11-28 05:59:26] HITS file was successfully produced:
[2025-11-28 05:59:26] -rw-------. 1 boincer umatlas 924245601 Nov 28 05:53 shared/HITS.pool.root.1
[2025-11-28 05:59:26]  *** Contents of shared directory: ***
[2025-11-28 05:59:26] total 1315940
[2025-11-28 05:59:26] -rw-r--r--. 2 boincer umatlas 407644338 Nov 27 00:01 ATLAS.root_0
[2025-11-28 05:59:26] -rw-r--r--. 2 boincer umatlas    590111 Nov 27 00:01 input.tar.gz
[2025-11-28 05:59:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-28 05:59:26] -rw-------. 1 boincer umatlas 924245601 Nov 28 05:53 HITS.pool.root.1
[2025-11-28 05:59:26] -rw-------. 1 boincer umatlas  15011840 Nov 28 05:59 result.tar.gz
05:59:27 (3725542): run_atlas exited; CPU time 284549.783604
05:59:27 (3725542): called boinc_finish(0)

</stderr_txt>
]]>

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