Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:09:47 (2398326): wrapper (7.7.26015): starting
05:09:47 (2398326): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 05:09:47] Arguments: --nthreads 3
[2025-11-27 05:09:47] Threads: 3
[2025-11-27 05:09:47] Checking for CVMFS
[2025-11-27 05:09:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 05:09:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 05:09:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 05:09:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 05:09:47] 2.9.2.0 2210343 40 55744 153345 3 88 35820535 36864001 0 130560 0 563465 100.000 6 41 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 05:09:47] CVMFS is ok
[2025-11-27 05:09:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 05:09:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 05:09:47] Further information can be found at the LHC@home message board.
[2025-11-27 05:09:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 05:09:47] Checking for apptainer binary...
[2025-11-27 05:09:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 05:09:47] Running /usr/bin/apptainer --version
[2025-11-27 05:09:47] apptainer version 1.4.1-1.1
[2025-11-27 05:09:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 05:09:47] thA335
[2025-11-27 05:09:47] apptainer works
[2025-11-27 05:09:47] Set ATHENA_PROC_NUMBER=3
[2025-11-27 05:09:47] Set ATHENA_CORE_NUMBER=3
[2025-11-27 05:09:47] Starting ATLAS job with PandaID=6898120472
[2025-11-27 05:09:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:14:02]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:14:02] 2025-11-27 04:13:04,348 | INFO     | ***************************************
[2025-11-27 05:14:02] 2025-11-27 04:13:04,348 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:14:02] 2025-11-27 04:13:04,348 | INFO     | ***************************************
[2025-11-27 05:14:02] 2025-11-27 04:13:04,348 | INFO     | 
[2025-11-27 05:14:02] 2025-11-27 04:13:04,349 | INFO     | architecture information:
[2025-11-27 05:14:02] 2025-11-27 04:13:04,349 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:14:02] 2025-11-27 04:13:04,359 | INFO     | cat /etc/os-release:
[2025-11-27 05:14:02] NAME="CentOS Linux"
[2025-11-27 05:14:02] VERSION="7 (Core)"
[2025-11-27 05:14:02] ID="centos"
[2025-11-27 05:14:02] ID_LIKE="rhel fedora"
[2025-11-27 05:14:02] VERSION_ID="7"
[2025-11-27 05:14:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:14:02] ANSI_COLOR="0;31"
[2025-11-27 05:14:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:14:02] HOME_URL="https://www.centos.org/"
[2025-11-27 05:14:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:14:02] 
[2025-11-27 05:14:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:14:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:14:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:14:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:14:02] 
[2025-11-27 05:14:02] 2025-11-27 04:13:04,359 | INFO     | ***************************************
[2025-11-27 05:14:02] 2025-11-27 04:13:04,863 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 05:14:02] 2025-11-27 04:13:04,877 | INFO     | sufficient remaining disk space (825778765824 B)
[2025-11-27 05:14:02] 2025-11-27 04:13:04,877 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:14:02] 2025-11-27 04:13:04,877 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:14:02] 2025-11-27 04:13:04,877 | INFO     | update_server=False
[2025-11-27 05:14:02] 2025-11-27 04:13:04,877 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:14:02] 2025-11-27 04:13:04,877 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:14:02] 2025-11-27 04:13:04,877 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:14:02] 2025-11-27 04:13:05,156 | INFO     | all data control threads have been joined
[2025-11-27 05:14:02] 2025-11-27 04:13:05,434 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:14:02] 2025-11-27 04:13:05,435 | INFO     | aborting loop
[2025-11-27 05:14:02] 2025-11-27 04:13:05,850 | INFO     | all job control threads have been joined
[2025-11-27 05:14:02] 2025-11-27 04:13:05,883 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:14:02] 2025-11-27 04:13:05,884 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:14:02] 2025-11-27 04:13:05,964 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:14:02] 2025-11-27 04:13:05,993 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:14:02] 2025-11-27 04:13:06,051 | INFO     | all payload control threads have been joined
[2025-11-27 05:14:02] 2025-11-27 04:13:06,162 | INFO     | [data] control thread has finished
[2025-11-27 05:14:02] 2025-11-27 04:13:06,317 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:14:02] 2025-11-27 04:13:06,437 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:14:02] 2025-11-27 04:13:06,441 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:14:02] 2025-11-27 04:13:06,856 | INFO     | [job] control thread has finished
[2025-11-27 05:14:02] 2025-11-27 04:13:06,898 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:14:02] 2025-11-27 04:13:07,057 | INFO     | [payload] control thread has finished
[2025-11-27 05:14:02] 2025-11-27 04:13:07,074 | INFO     | [job] validate thread has finished
[2025-11-27 05:14:02] 2025-11-27 04:13:07,126 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:14:02] 2025-11-27 04:13:07,164 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:14:02] 2025-11-27 04:13:07,222 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:14:02] 2025-11-27 04:13:07,971 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:14:02] 2025-11-27 04:13:08,884 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:14:02] 2025-11-27 04:13:35,251 | INFO     | PID=2402049 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 05:14:02] 2025-11-27 04:13:35,251 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:14:02] 2025-11-27 04:13:35,251 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:14:02] 2025-11-27 04:13:35,251 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:14:02] 2025-11-27 04:13:56,396 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:14:02] 2025-11-27 04:13:56,905 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140257614972736)>', '<ExcThread(monitor, started 140256972101376)>']
[2025-11-27 05:14:02] 2025-11-27 04:13:57,367 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:14:02] 2025-11-27 04:13:57,368 | INFO     | [monitor] control thread has ended
[2025-11-27 05:14:02] 2025-11-27 04:14:01,931 | INFO     | all workflow threads have been joined
[2025-11-27 05:14:02] 2025-11-27 04:14:01,931 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:14:02] 2025-11-27 04:14:01,932 | INFO     | traces error code: 0
[2025-11-27 05:14:02] 2025-11-27 04:14:01,933 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:14:02] 2025-11-27 04:14:02,008 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:14:02] 2025-11-27 04:14:02,011 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:14:02] 2025-11-27 04:14:02,014 [wrapper] pilotpid: 2402049
[2025-11-27 05:14:02] 2025-11-27 04:14:02,017 [wrapper] Pilot exit status: 0
[2025-11-27 05:14:02] 2025-11-27 04:14:02,024 [wrapper] pandaids: 6898120472
[2025-11-27 05:14:02] 2025-11-27 04:14:02,044 [wrapper] cleanup supervisor_pilot 2402055 2402050
[2025-11-27 05:14:02] 2025-11-27 04:14:02,047 [wrapper] Test setup, not cleaning
[2025-11-27 05:14:02] 2025-11-27 04:14:02,049 [wrapper] apfmon messages muted
[2025-11-27 05:14:02] 2025-11-27 04:14:02,052 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:14:02] 2025-11-27 04:14:02,055 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:14:02]  *** Error codes and diagnostics ***
[2025-11-27 05:14:02]     "exeErrorCode": 65,
[2025-11-27 05:14:02]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 05:14:02]     "pilotErrorCode": 1305,
[2025-11-27 05:14:02]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 05:14:02]  *** Listing of results directory ***
[2025-11-27 05:14:02] total 405280
[2025-11-27 05:14:02] -rw-r--r-- 1 boinc boinc    576529 Nov 26 03:38 pilot3.tar.gz
[2025-11-27 05:14:02] -rw-r--r-- 1 boinc boinc      5112 Nov 26 04:26 queuedata.json
[2025-11-27 05:14:02] -rwx------ 1 boinc boinc     36292 Nov 26 04:30 runpilot2-wrapper.sh
[2025-11-27 05:14:02] -rw-r--r-- 1 boinc boinc       100 Nov 27 05:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:14:02] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 05:09 run_atlas
[2025-11-27 05:14:02] -rw-r--r-- 1 boinc boinc       105 Nov 27 05:09 job.xml
[2025-11-27 05:14:02] -rw-r--r-- 2 boinc boinc 410815445 Nov 27 05:09 EVNT.47483658._003162.pool.root.1
[2025-11-27 05:14:02] -rw-r--r-- 2 boinc boinc    590105 Nov 27 05:09 input.tar.gz
[2025-11-27 05:14:02] -rw-r--r-- 2 boinc boinc     15847 Nov 27 05:09 start_atlas.sh
[2025-11-27 05:14:02] drwxrwx--x 2 boinc boinc      4096 Nov 27 05:09 shared
[2025-11-27 05:14:02] -rw-r--r-- 1 boinc boinc         0 Nov 27 05:09 boinc_setup_complete
[2025-11-27 05:14:02] -rw-r--r-- 1 boinc boinc      6196 Nov 27 05:09 init_data.xml
[2025-11-27 05:14:02] -rw-r--r-- 1 boinc boinc         0 Nov 27 05:09 boinc_lockfile
[2025-11-27 05:14:02] -rw-r--r-- 1 boinc boinc      2785 Nov 27 05:09 pandaJob.out
[2025-11-27 05:14:02] -rw------- 1 boinc boinc    991546 Nov 27 05:09 agis_schedconf.cvmfs.json
[2025-11-27 05:14:02] -rw------- 1 boinc boinc   1516240 Nov 27 05:09 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:14:02] drwx------ 5 boinc boinc      4096 Nov 27 05:09 pilot3
[2025-11-27 05:14:02] -rw-r--r-- 1 boinc boinc       523 Nov 27 05:10 boinc_task_state.xml
[2025-11-27 05:14:02] -rw------- 1 boinc boinc       966 Nov 27 05:10 memory_monitor_summary.json
[2025-11-27 05:14:02] -rw------- 1 boinc boinc     56071 Nov 27 05:11 log.47556173._001187.job.log.tgz.1
[2025-11-27 05:14:02] -rw------- 1 boinc boinc        95 Nov 27 05:12 pilot_heartbeat.json
[2025-11-27 05:14:02] -rw------- 1 boinc boinc      8386 Nov 27 05:13 heartbeat.json
[2025-11-27 05:14:02] -rw-r--r-- 1 boinc boinc      8192 Nov 27 05:13 boinc_mmap_file
[2025-11-27 05:14:02] -rw-r--r-- 1 boinc boinc        23 Nov 27 05:13 wrapper_checkpoint.txt
[2025-11-27 05:14:02] -rw------- 1 boinc boinc      4752 Nov 27 05:14 pilotlog.txt
[2025-11-27 05:14:02] -rw------- 1 boinc boinc     91305 Nov 27 05:14 log.47556173._001187.job.log.1
[2025-11-27 05:14:02] -rw------- 1 boinc boinc       186 Nov 27 05:14 output.list
[2025-11-27 05:14:02] -rw-r--r-- 1 boinc boinc       620 Nov 27 05:14 runtime_log
[2025-11-27 05:14:02] -rw------- 1 boinc boinc    163840 Nov 27 05:14 result.tar.gz
[2025-11-27 05:14:02] -rw-r--r-- 1 boinc boinc      8744 Nov 27 05:14 runtime_log.err
[2025-11-27 05:14:02] -rw------- 1 boinc boinc       649 Nov 27 05:14 FXbMDmvPLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJrJKDmxgcKNo.diag
[2025-11-27 05:14:02] -rw-r--r-- 1 boinc boinc      9694 Nov 27 05:14 stderr.txt
[2025-11-27 05:14:02] No HITS result produced
[2025-11-27 05:14:02]  *** Contents of shared directory: ***
[2025-11-27 05:14:02] total 401948
[2025-11-27 05:14:02] -rw-r--r-- 2 boinc boinc 410815445 Nov 27 05:09 ATLAS.root_0
[2025-11-27 05:14:02] -rw-r--r-- 2 boinc boinc    590105 Nov 27 05:09 input.tar.gz
[2025-11-27 05:14:02] -rw-r--r-- 2 boinc boinc     15847 Nov 27 05:09 start_atlas.sh
[2025-11-27 05:14:02] -rw------- 1 boinc boinc    163840 Nov 27 05:14 result.tar.gz
05:14:04 (2398326): run_atlas exited; CPU time 29.715543
05:14:04 (2398326): called boinc_finish(0)

</stderr_txt>
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