Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:21:55 (3331173): wrapper (7.7.26015): starting
22:21:55 (3331173): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 22:21:55] Arguments: --nthreads 8
[2025-11-26 22:21:55] Threads: 8
[2025-11-26 22:21:55] Checking for CVMFS
[2025-11-26 22:21:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 22:21:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 22:21:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 22:21:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 22:21:55] 2.13.3.0 12548 30941 354972 153345 3 57 33364384 40960000 36172 16776704 34 156615997 99.630 144122922 35363 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 22:21:55] CVMFS is ok
[2025-11-26 22:21:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 22:21:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 22:21:55] Further information can be found at the LHC@home message board.
[2025-11-26 22:21:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 22:21:55] Checking for apptainer binary...
[2025-11-26 22:21:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 22:21:55] Running /usr/bin/apptainer --version
[2025-11-26 22:21:55] apptainer version 1.4.4-1.el9
[2025-11-26 22:21:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 22:21:55] c7-11-12.aglt2.org
[2025-11-26 22:21:55] apptainer works
[2025-11-26 22:21:55] Set ATHENA_PROC_NUMBER=8
[2025-11-26 22:21:55] Set ATHENA_CORE_NUMBER=8
[2025-11-26 22:21:55] Starting ATLAS job with PandaID=6898120425
[2025-11-26 22:21:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:04:57]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:04:57] 2025-11-27 18:03:55,339 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:04:57] 2025-11-27 18:03:56,341 | INFO     | time since job start (52897s) is within the limit (172800.0s)
[2025-11-27 13:04:57] 2025-11-27 18:03:56,955 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 13:04:57] 2025-11-27 18:03:56,959 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3288.7080937499995
[2025-11-27 13:04:57] 2025-11-27 18:03:56,970 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898120425/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 13:04:57] 2025-11-27 18:03:56,971 | INFO     | extracted standard info from prmon json
[2025-11-27 13:04:57] 2025-11-27 18:03:56,971 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 13:04:57] 2025-11-27 18:03:56,971 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:04:57] 2025-11-27 18:03:56,985 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:04:57] 2025-11-27 18:03:56,989 | INFO     | sum of square deviations: 202081529862.07623
[2025-11-27 13:04:57] 2025-11-27 18:03:57,009 | INFO     | sum of deviations: 1249621868831.782
[2025-11-27 13:04:57] 2025-11-27 18:03:57,009 | INFO     | mean x: 1764240195.1695502
[2025-11-27 13:04:57] 2025-11-27 18:03:57,009 | INFO     | mean y: 2902444.9538638983
[2025-11-27 13:04:57] 2025-11-27 18:03:57,009 | INFO     | intersect: -10906719682.61325
[2025-11-27 13:04:57] 2025-11-27 18:03:57,010 | INFO     | chi2: 7.304537309835559
[2025-11-27 13:04:57] 2025-11-27 18:03:57,011 | INFO     | sum of square deviations: 198605671622.69714
[2025-11-27 13:04:57] 2025-11-27 18:03:57,027 | INFO     | sum of deviations: 1534254766500.4375
[2025-11-27 13:04:57] 2025-11-27 18:03:57,027 | INFO     | mean x: 1764240042.6763341
[2025-11-27 13:04:57] 2025-11-27 18:03:57,027 | INFO     | mean y: 2914925.4675174016
[2025-11-27 13:04:57] 2025-11-27 18:03:57,027 | INFO     | intersect: -13626069949.99644
[2025-11-27 13:04:57] 2025-11-27 18:03:57,028 | INFO     | chi2: 4.272265465107976
[2025-11-27 13:04:57] 2025-11-27 18:03:57,028 | INFO     | current chi2=4.272265465107976 (change=41.51216861668471 %)
[2025-11-27 13:04:57] 2025-11-27 18:03:57,029 | INFO     | sum of square deviations: 195169749780.32666
[2025-11-27 13:04:57] 2025-11-27 18:03:57,044 | INFO     | sum of deviations: 1576276682717.1538
[2025-11-27 13:04:57] 2025-11-27 18:03:57,044 | INFO     | mean x: 1764239890.1796966
[2025-11-27 13:04:57] 2025-11-27 18:03:57,044 | INFO     | mean y: 2916783.1353558926
[2025-11-27 13:04:57] 2025-11-27 18:03:57,044 | INFO     | intersect: -14245860011.115826
[2025-11-27 13:04:57] 2025-11-27 18:03:57,045 | INFO     | chi2: 4.058390211396272
[2025-11-27 13:04:57] 2025-11-27 18:03:57,045 | INFO     | current chi2=4.058390211396272 (change=5.006132120263704 %)
[2025-11-27 13:04:57] 2025-11-27 18:03:57,045 | INFO     | right removable region: 856
[2025-11-27 13:04:57] 2025-11-27 18:03:57,046 | INFO     | sum of square deviations: 198605053082.69705
[2025-11-27 13:04:57] 2025-11-27 18:03:57,061 | INFO     | sum of deviations: 922447635084.8888
[2025-11-27 13:04:57] 2025-11-27 18:03:57,062 | INFO     | mean x: 1764240347.6763341
[2025-11-27 13:04:57] 2025-11-27 18:03:57,062 | INFO     | mean y: 2916791.813225058
[2025-11-27 13:04:57] 2025-11-27 18:03:57,062 | INFO     | intersect: -8191332605.042434
[2025-11-27 13:04:57] 2025-11-27 18:03:57,063 | INFO     | chi2: 3.64169160100934
[2025-11-27 13:04:57] 2025-11-27 18:03:57,063 | INFO     | current chi2=3.64169160100934 (change=50.14480114837935 %)
[2025-11-27 13:04:57] 2025-11-27 18:03:57,063 | INFO     | sum of square deviations: 195168827706.3269
[2025-11-27 13:04:57] 2025-11-27 18:03:57,078 | INFO     | sum of deviations: 838964166322.525
[2025-11-27 13:04:57] 2025-11-27 18:03:57,079 | INFO     | mean x: 1764240500.1796966
[2025-11-27 13:04:57] 2025-11-27 18:03:57,079 | INFO     | mean y: 2920490.788798133
[2025-11-27 13:04:57] 2025-11-27 18:03:57,079 | INFO     | intersect: -7580947167.897309
[2025-11-27 13:04:57] 2025-11-27 18:03:57,080 | INFO     | chi2: 3.3756585902158975
[2025-11-27 13:04:57] 2025-11-27 18:03:57,080 | INFO     | current chi2=3.3756585902158975 (change=7.305204282529251 %)
[2025-11-27 13:04:57] 2025-11-27 18:03:57,080 | INFO     | left removable region: 20
[2025-11-27 13:04:57] 2025-11-27 18:03:57,081 | INFO     | sum of square deviations: 181170266361.99384
[2025-11-27 13:04:57] 2025-11-27 18:03:57,095 | INFO     | sum of deviations: 1098656904677.3188
[2025-11-27 13:04:57] 2025-11-27 18:03:57,095 | INFO     | mean x: 1764240469.6925838
[2025-11-27 13:04:57] 2025-11-27 18:03:57,096 | INFO     | mean y: 2937877.616028708
[2025-11-27 13:04:57] 2025-11-27 18:03:57,096 | INFO     | intersect: -10695809838.88858
[2025-11-27 13:04:57] 2025-11-27 18:03:57,096 | INFO     | chi2: 0.06377549848253115
[2025-11-27 13:04:57] 2025-11-27 18:03:57,097 | INFO     | current memory leak: 6.06 B/s (using 836 data points, chi2=0.06)
[2025-11-27 13:04:57] 2025-11-27 18:03:57,098 | INFO     | could have reported an average CPU frequency of 3276 MHz (32 samples)
[2025-11-27 13:04:57] 2025-11-27 18:03:57,098 | INFO     | ..............................
[2025-11-27 13:04:57] 2025-11-27 18:03:57,098 | INFO     | . Timing measurements:
[2025-11-27 13:04:57] 2025-11-27 18:03:57,098 | INFO     | . get job = 0 s
[2025-11-27 13:04:57] 2025-11-27 18:03:57,098 | INFO     | . initial setup = 3 s
[2025-11-27 13:04:57] 2025-11-27 18:03:57,099 | INFO     | . payload setup = 11 s
[2025-11-27 13:04:57] 2025-11-27 18:03:57,099 | INFO     | . stage-in = 0 s
[2025-11-27 13:04:57] 2025-11-27 18:03:57,099 | INFO     | . payload execution = 52846 s
[2025-11-27 13:04:57] 2025-11-27 18:03:57,099 | INFO     | . stage-out = 4 s
[2025-11-27 13:04:57] 2025-11-27 18:03:57,099 | INFO     | . log creation = 0 s
[2025-11-27 13:04:57] 2025-11-27 18:03:57,099 | INFO     | ..............................
[2025-11-27 13:04:57] 2025-11-27 18:03:57,699 | INFO     | 
[2025-11-27 13:04:57] 2025-11-27 18:03:57,700 | INFO     | job summary report
[2025-11-27 13:04:57] 2025-11-27 18:03:57,700 | INFO     | --------------------------------------------------
[2025-11-27 13:04:57] 2025-11-27 18:03:57,700 | INFO     | PanDA job id: 6898120425
[2025-11-27 13:04:57] 2025-11-27 18:03:57,700 | INFO     | task id: 47556161
[2025-11-27 13:04:57] 2025-11-27 18:03:57,700 | INFO     | errors: (none)
[2025-11-27 13:04:57] 2025-11-27 18:03:57,700 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:04:57] 2025-11-27 18:03:57,700 | INFO     | pilot state: finished 
[2025-11-27 13:04:57] 2025-11-27 18:03:57,700 | INFO     | transexitcode: 0
[2025-11-27 13:04:57] 2025-11-27 18:03:57,701 | INFO     | exeerrorcode: 0
[2025-11-27 13:04:57] 2025-11-27 18:03:57,701 | INFO     | exeerrordiag: 
[2025-11-27 13:04:57] 2025-11-27 18:03:57,701 | INFO     | exitcode: 0
[2025-11-27 13:04:57] 2025-11-27 18:03:57,701 | INFO     | exitmsg: OK
[2025-11-27 13:04:57] 2025-11-27 18:03:57,701 | INFO     | cpuconsumptiontime: 195838 s
[2025-11-27 13:04:57] 2025-11-27 18:03:57,701 | INFO     | nevents: 1000
[2025-11-27 13:04:57] 2025-11-27 18:03:57,701 | INFO     | neventsw: 0
[2025-11-27 13:04:57] 2025-11-27 18:03:57,701 | INFO     | pid: 3342736
[2025-11-27 13:04:57] 2025-11-27 18:03:57,701 | INFO     | pgrp: 3342736
[2025-11-27 13:04:57] 2025-11-27 18:03:57,701 | INFO     | corecount: 8
[2025-11-27 13:04:57] 2025-11-27 18:03:57,701 | INFO     | event service: False
[2025-11-27 13:04:57] 2025-11-27 18:03:57,701 | INFO     | sizes: {0: 2284093, 1: 2284292, 9: 2284554, 11: 2284582, 52862: 2335257, 52867: 2344251, 52868: 2344435, 52875: 2344681}
[2025-11-27 13:04:57] 2025-11-27 18:03:57,701 | INFO     | --------------------------------------------------
[2025-11-27 13:04:57] 2025-11-27 18:03:57,701 | INFO     | 
[2025-11-27 13:04:57] 2025-11-27 18:03:57,702 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 13:04:57] 2025-11-27 18:03:57,792 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,792 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,792 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,792 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,792 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,792 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,792 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,793 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,793 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,793 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,793 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,793 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,793 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,793 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,793 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,793 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,793 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,793 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:04:57] 2025-11-27 18:03:57,793 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,793 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:04:57] 2025-11-27 18:03:57,794 | INFO     | job 6898120425 has completed (purged errors)
[2025-11-27 13:04:57] 2025-11-27 18:03:57,794 | INFO     | overall cleanup function is called
[2025-11-27 13:04:57] 2025-11-27 18:03:58,811 | INFO     | --- collectZombieJob: --- 10, [3342736]
[2025-11-27 13:04:57] 2025-11-27 18:03:58,811 | INFO     | zombie collector waiting for pid 3342736
[2025-11-27 13:04:57] 2025-11-27 18:03:58,811 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:04:57] 2025-11-27 18:03:58,811 | INFO     | collected zombie processes
[2025-11-27 13:04:57] 2025-11-27 18:03:58,811 | INFO     | will attempt to kill all subprocesses of pid=3342736
[2025-11-27 13:04:57] 2025-11-27 18:03:59,560 | INFO     | process IDs to be killed: [3342736] (in reverse order)
[2025-11-27 13:04:57] 2025-11-27 18:03:59,742 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:04:57] 2025-11-27 18:03:59,743 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:04:57] 2025-11-27 18:03:59,766 | INFO     | did not find any defunct processes belonging to 3342736
[2025-11-27 13:04:57] 2025-11-27 18:03:59,788 | INFO     | did not find any defunct processes belonging to 3342736
[2025-11-27 13:04:57] 2025-11-27 18:03:59,789 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:04:57] 2025-11-27 18:03:59,789 | INFO     | ready for new job
[2025-11-27 13:04:57] 2025-11-27 18:03:59,790 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:04:57] 2025-11-27 18:03:59,804 | INFO     | ***************************************
[2025-11-27 13:04:57] 2025-11-27 18:03:59,804 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:04:57] 2025-11-27 18:03:59,804 | INFO     | ***************************************
[2025-11-27 13:04:57] 2025-11-27 18:03:59,804 | INFO     | 
[2025-11-27 13:04:57] 2025-11-27 18:03:59,808 | INFO     | architecture information:
[2025-11-27 13:04:57] 2025-11-27 18:03:59,809 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:04:57] 2025-11-27 18:03:59,829 | INFO     | cat /etc/os-release:
[2025-11-27 13:04:57] NAME="CentOS Linux"
[2025-11-27 13:04:57] VERSION="7 (Core)"
[2025-11-27 13:04:57] ID="centos"
[2025-11-27 13:04:57] ID_LIKE="rhel fedora"
[2025-11-27 13:04:57] VERSION_ID="7"
[2025-11-27 13:04:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:04:57] ANSI_COLOR="0;31"
[2025-11-27 13:04:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:04:57] HOME_URL="https://www.centos.org/"
[2025-11-27 13:04:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:04:57] 
[2025-11-27 13:04:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:04:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:04:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:04:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:04:57] 
[2025-11-27 13:04:57] 2025-11-27 18:03:59,829 | INFO     | ***************************************
[2025-11-27 13:04:57] 2025-11-27 18:04:00,333 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 13:04:57] 2025-11-27 18:04:00,395 | INFO     | sufficient remaining disk space (81217454080 B)
[2025-11-27 13:04:57] 2025-11-27 18:04:00,396 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:04:57] 2025-11-27 18:04:00,396 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:04:57] 2025-11-27 18:04:00,396 | INFO     | update_server=False
[2025-11-27 13:04:57] 2025-11-27 18:04:00,396 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:04:57] 2025-11-27 18:04:00,396 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:04:57] 2025-11-27 18:04:00,459 | INFO     | all payload control threads have been joined
[2025-11-27 13:04:57] 2025-11-27 18:04:00,636 | INFO     | all data control threads have been joined
[2025-11-27 13:04:57] 2025-11-27 18:04:01,054 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:04:57] 2025-11-27 18:04:01,098 | INFO     | all job control threads have been joined
[2025-11-27 13:04:57] 2025-11-27 18:04:01,360 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:04:57] 2025-11-27 18:04:01,360 | INFO     | aborting loop
[2025-11-27 13:04:57] 2025-11-27 18:04:01,421 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:04:57] 2025-11-27 18:04:01,464 | INFO     | [payload] control thread has finished
[2025-11-27 13:04:57] 2025-11-27 18:04:01,469 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:04:57] 2025-11-27 18:04:01,552 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:04:57] 2025-11-27 18:04:01,636 | INFO     | [job] validate thread has finished
[2025-11-27 13:04:57] 2025-11-27 18:04:01,642 | INFO     | [data] control thread has finished
[2025-11-27 13:04:57] 2025-11-27 18:04:01,674 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:04:57] 2025-11-27 18:04:02,075 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:04:57] 2025-11-27 18:04:02,104 | INFO     | [job] control thread has finished
[2025-11-27 13:04:57] 2025-11-27 18:04:02,256 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:04:57] 2025-11-27 18:04:02,295 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:04:57] 2025-11-27 18:04:02,368 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:04:57] 2025-11-27 18:04:02,402 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:04:57] 2025-11-27 18:04:02,880 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:04:57] 2025-11-27 18:04:03,261 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:04:57] 2025-11-27 18:04:05,064 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:04:57] 2025-11-27 18:04:11,216 | INFO     | job.realtimelogging is not enabled
[2025-11-27 13:04:57] 2025-11-27 18:04:12,218 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:04:57] 2025-11-27 18:04:30,023 | INFO     | PID=3335678 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 13:04:57] 2025-11-27 18:04:30,023 | INFO     | .. there are 46 such processes running
[2025-11-27 13:04:57] 2025-11-27 18:04:30,024 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:04:57] 2025-11-27 18:04:30,024 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:04:57] 2025-11-27 18:04:30,024 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:04:57] 2025-11-27 18:04:50,211 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:04:57] 2025-11-27 18:04:52,006 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140094906836800)>', '<ExcThread(monitor, started 140094543472384)>']
[2025-11-27 13:04:57] 2025-11-27 18:04:52,152 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:04:57] 2025-11-27 18:04:52,152 | INFO     | [monitor] control thread has ended
[2025-11-27 13:04:57] 2025-11-27 18:04:57,039 | INFO     | all workflow threads have been joined
[2025-11-27 13:04:57] 2025-11-27 18:04:57,045 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:04:57] 2025-11-27 18:04:57,046 | INFO     | traces error code: 0
[2025-11-27 13:04:57] 2025-11-27 18:04:57,046 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:04:57] 2025-11-27 18:04:57,288 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:04:57] 2025-11-27 18:04:57,291 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:04:57] 2025-11-27 18:04:57,294 [wrapper] pilotpid: 3335678
[2025-11-27 13:04:57] 2025-11-27 18:04:57,298 [wrapper] Pilot exit status: 0
[2025-11-27 13:04:57] 2025-11-27 18:04:57,311 [wrapper] pandaids: 6898120425
[2025-11-27 13:04:57] 2025-11-27 18:04:57,415 [wrapper] cleanup supervisor_pilot 2849502 3335679
[2025-11-27 13:04:57] 2025-11-27 18:04:57,418 [wrapper] Test setup, not cleaning
[2025-11-27 13:04:57] 2025-11-27 18:04:57,422 [wrapper] apfmon messages muted
[2025-11-27 13:04:57] 2025-11-27 18:04:57,428 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:04:57] 2025-11-27 18:04:57,432 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:04:57]  *** Error codes and diagnostics ***
[2025-11-27 13:04:57]     "exeErrorCode": 0,
[2025-11-27 13:04:57]     "exeErrorDiag": "",
[2025-11-27 13:04:57]     "pilotErrorCode": 0,
[2025-11-27 13:04:57]     "pilotErrorDiag": "",
[2025-11-27 13:04:57]  *** Listing of results directory ***
[2025-11-27 13:04:57] total 1308944
[2025-11-27 13:04:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 21:38 pilot3.tar.gz
[2025-11-27 13:04:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:26 queuedata.json
[2025-11-27 13:04:57] -rwx------. 1 boincer umatlas     36292 Nov 25 22:27 runpilot2-wrapper.sh
[2025-11-27 13:04:57] -rw-r--r--. 1 boincer umatlas       100 Nov 26 22:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:04:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 22:21 run_atlas
[2025-11-27 13:04:57] -rw-r--r--. 1 boincer umatlas       105 Nov 26 22:21 job.xml
[2025-11-27 13:04:57] -rw-r--r--. 2 boincer umatlas 409924835 Nov 26 22:21 EVNT.47483658._002426.pool.root.1
[2025-11-27 13:04:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 22:21 start_atlas.sh
[2025-11-27 13:04:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 22:21 shared
[2025-11-27 13:04:57] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 22:21 input.tar.gz
[2025-11-27 13:04:57] -rw-r--r--. 1 boincer umatlas         0 Nov 26 22:21 boinc_lockfile
[2025-11-27 13:04:57] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 22:21 pandaJob.out
[2025-11-27 13:04:57] -rw-------. 1 boincer umatlas        57 Nov 26 22:21 setup.sh.local
[2025-11-27 13:04:57] -rw-------. 1 boincer umatlas    991546 Nov 26 22:22 agis_schedconf.cvmfs.json
[2025-11-27 13:04:57] drwx------. 5 boincer umatlas      4096 Nov 26 22:22 pilot3
[2025-11-27 13:04:57] -rw-r--r--. 1 boincer umatlas       533 Nov 27 12:55 boinc_task_state.xml
[2025-11-27 13:04:57] -rw-r--r--. 1 boincer umatlas      6903 Nov 27 13:02 init_data.xml
[2025-11-27 13:04:57] -rw-------. 1 boincer umatlas 908383969 Nov 27 13:03 HITS.47556161._004083.pool.root.1
[2025-11-27 13:04:57] -rw-------. 1 boincer umatlas      1057 Nov 27 13:03 memory_monitor_summary.json
[2025-11-27 13:04:57] -rw-------. 1 boincer umatlas   1516240 Nov 27 13:03 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:04:57] -rw-------. 1 boincer umatlas   2055600 Nov 27 13:03 log.47556161._004083.job.log.tgz.1
[2025-11-27 13:04:57] -rw-------. 1 boincer umatlas      8594 Nov 27 13:03 heartbeat.json
[2025-11-27 13:04:57] -rw-------. 1 boincer umatlas        95 Nov 27 13:04 pilot_heartbeat.json
[2025-11-27 13:04:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 13:04 boinc_mmap_file
[2025-11-27 13:04:57] -rw-r--r--. 1 boincer umatlas        29 Nov 27 13:04 wrapper_checkpoint.txt
[2025-11-27 13:04:57] -rw-------. 1 boincer umatlas      4896 Nov 27 13:04 pilotlog.txt
[2025-11-27 13:04:57] -rw-------. 1 boincer umatlas   7011860 Nov 27 13:04 log.47556161._004083.job.log.1
[2025-11-27 13:04:57] -rw-------. 1 boincer umatlas       353 Nov 27 13:04 output.list
[2025-11-27 13:04:57] -rw-r--r--. 1 boincer umatlas       620 Nov 27 13:04 runtime_log
[2025-11-27 13:04:57] -rw-------. 1 boincer umatlas   9082880 Nov 27 13:04 result.tar.gz
[2025-11-27 13:04:57] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 13:04 runtime_log.err
[2025-11-27 13:04:57] -rw-------. 1 boincer umatlas       662 Nov 27 13:04 1jIMDmiMLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4oMKDmjONyBn.diag
[2025-11-27 13:04:57] -rw-r--r--. 1 boincer umatlas     21316 Nov 27 13:04 stderr.txt
[2025-11-27 13:04:57] HITS file was successfully produced:
[2025-11-27 13:04:57] -rw-------. 1 boincer umatlas 908383969 Nov 27 13:03 shared/HITS.pool.root.1
[2025-11-27 13:04:57]  *** Contents of shared directory: ***
[2025-11-27 13:04:57] total 1296888
[2025-11-27 13:04:57] -rw-r--r--. 2 boincer umatlas 409924835 Nov 26 22:21 ATLAS.root_0
[2025-11-27 13:04:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 22:21 start_atlas.sh
[2025-11-27 13:04:57] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 22:21 input.tar.gz
[2025-11-27 13:04:57] -rw-------. 1 boincer umatlas 908383969 Nov 27 13:03 HITS.pool.root.1
[2025-11-27 13:04:57] -rw-------. 1 boincer umatlas   9082880 Nov 27 13:04 result.tar.gz
13:04:59 (3331173): run_atlas exited; CPU time 196090.545709
13:04:59 (3331173): called boinc_finish(0)

</stderr_txt>
]]>

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