Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:21:54 (3879118): wrapper (7.7.26015): starting
23:21:54 (3879118): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 23:21:54] Arguments: --nthreads 9
[2025-11-26 23:21:54] Threads: 9
[2025-11-26 23:21:54] Checking for CVMFS
[2025-11-26 23:21:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:21:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:21:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:21:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:21:57] 2.13.3.0 12161 31003 337344 153347 1 313 27547612 40960001 22330 16776704 0 81500706 99.549 95372379 37900 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 23:21:57] CVMFS is ok
[2025-11-26 23:21:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:21:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:21:57] Further information can be found at the LHC@home message board.
[2025-11-26 23:21:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:21:57] Checking for apptainer binary...
[2025-11-26 23:21:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:21:57] Running /usr/bin/apptainer --version
[2025-11-26 23:21:57] apptainer version 1.4.4-1.el9
[2025-11-26 23:21:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:21:58] c6-5-7-1.aglt2.org
[2025-11-26 23:21:58] apptainer works
[2025-11-26 23:21:58] Set ATHENA_PROC_NUMBER=9
[2025-11-26 23:21:58] Set ATHENA_CORE_NUMBER=9
[2025-11-26 23:21:59] Starting ATLAS job with PandaID=6897394583
[2025-11-26 23:21:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:57:24]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:57:24] 2025-11-28 04:56:04,696 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:57:24] 2025-11-28 04:56:06,413 | INFO     | time since job start (88350s) is within the limit (172800.0s)
[2025-11-27 23:57:24] 2025-11-28 04:56:07,202 | INFO     | monitor loop #5341: job 0:6897394583 is in state 'finished'
[2025-11-27 23:57:24] 2025-11-28 04:56:07,202 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:57:24] 2025-11-28 04:56:08,420 | INFO     | time since job start (88352s) is within the limit (172800.0s)
[2025-11-27 23:57:24] 2025-11-28 04:56:09,706 | INFO     | monitor loop #5342: job 0:6897394583 is in state 'finished'
[2025-11-27 23:57:24] 2025-11-28 04:56:09,706 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:57:24] 2025-11-28 04:56:10,428 | INFO     | time since job start (88354s) is within the limit (172800.0s)
[2025-11-27 23:57:24] 2025-11-28 04:56:12,211 | INFO     | monitor loop #5343: job 0:6897394583 is in state 'finished'
[2025-11-27 23:57:24] 2025-11-28 04:56:12,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:57:24] 2025-11-28 04:56:12,437 | INFO     | time since job start (88356s) is within the limit (172800.0s)
[2025-11-27 23:57:24] 2025-11-28 04:56:14,033 | INFO     | PID=3884308 has CPU usage=10.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 23:57:24] 2025-11-28 04:56:14,034 | INFO     | .. there are 24 such processes running
[2025-11-27 23:57:24] 2025-11-28 04:56:14,716 | INFO     | monitor loop #5344: job 0:6897394583 is in state 'finished'
[2025-11-27 23:57:24] 2025-11-28 04:56:14,716 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:57:24] 2025-11-28 04:56:14,792 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 23:57:24] 2025-11-28 04:56:14,810 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2782.419982142857
[2025-11-27 23:57:24] 2025-11-28 04:56:14,839 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897394583/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:57:24] 2025-11-28 04:56:14,840 | INFO     | extracted standard info from prmon json
[2025-11-27 23:57:24] 2025-11-28 04:56:14,844 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:57:24] 2025-11-28 04:56:14,844 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:57:24] 2025-11-28 04:56:14,883 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:57:24] 2025-11-28 04:56:14,885 | INFO     | sum of square deviations: 935526747124.0839
[2025-11-27 23:57:24] 2025-11-28 04:56:14,949 | INFO     | sum of deviations: 7700575397652.39
[2025-11-27 23:57:24] 2025-11-28 04:56:14,950 | INFO     | mean x: 1764261675.6089966
[2025-11-27 23:57:24] 2025-11-28 04:56:14,950 | INFO     | mean y: 2979824.3086505192
[2025-11-27 23:57:24] 2025-11-28 04:56:14,950 | INFO     | intersect: -14519138432.577126
[2025-11-27 23:57:24] 2025-11-28 04:56:14,955 | INFO     | chi2: 18.675217932420033
[2025-11-27 23:57:24] 2025-11-28 04:56:14,957 | INFO     | sum of square deviations: 925849538729.9315
[2025-11-27 23:57:24] 2025-11-28 04:56:15,023 | INFO     | sum of deviations: 8210833503699.301
[2025-11-27 23:57:24] 2025-11-28 04:56:15,023 | INFO     | mean x: 1764261523.1180556
[2025-11-27 23:57:24] 2025-11-28 04:56:15,023 | INFO     | mean y: 2987864.6041666665
[2025-11-27 23:57:24] 2025-11-28 04:56:15,023 | INFO     | intersect: -15643245154.183182
[2025-11-27 23:57:24] 2025-11-28 04:56:15,024 | INFO     | chi2: 15.369002265174187
[2025-11-27 23:57:24] 2025-11-28 04:56:15,024 | INFO     | current chi2=15.369002265174187 (change=17.70375949137537 %)
[2025-11-27 23:57:24] 2025-11-28 04:56:15,025 | INFO     | right removable region: 1439
[2025-11-27 23:57:24] 2025-11-28 04:56:15,030 | INFO     | sum of square deviations: 925847239029.9313
[2025-11-27 23:57:24] 2025-11-28 04:56:15,040 | INFO     | time since job start (88359s) is within the limit (172800.0s)
[2025-11-27 23:57:24] 2025-11-28 04:56:15,105 | INFO     | sum of deviations: 7105279790132.99
[2025-11-27 23:57:24] 2025-11-28 04:56:15,106 | INFO     | mean x: 1764261828.1180556
[2025-11-27 23:57:24] 2025-11-28 04:56:15,106 | INFO     | mean y: 2989202.3881944446
[2025-11-27 23:57:24] 2025-11-28 04:56:15,106 | INFO     | intersect: -13536581240.101452
[2025-11-27 23:57:24] 2025-11-28 04:56:15,107 | INFO     | chi2: 14.56333702789409
[2025-11-27 23:57:24] 2025-11-28 04:56:15,108 | INFO     | current chi2=14.56333702789409 (change=22.017846963851223 %)
[2025-11-27 23:57:24] 2025-11-28 04:56:15,108 | INFO     | left removable region: 10
[2025-11-27 23:57:24] 2025-11-28 04:56:15,109 | INFO     | sum of square deviations: 904790603696.231
[2025-11-27 23:57:24] 2025-11-28 04:56:15,176 | INFO     | sum of deviations: 7184525354471.575
[2025-11-27 23:57:24] 2025-11-28 04:56:15,176 | INFO     | mean x: 1764261797.6375086
[2025-11-27 23:57:24] 2025-11-28 04:56:15,177 | INFO     | mean y: 3008182.7578726383
[2025-11-27 23:57:24] 2025-11-28 04:56:15,177 | INFO     | intersect: -14006181971.595055
[2025-11-27 23:57:24] 2025-11-28 04:56:15,182 | INFO     | chi2: 6.827936242526339
[2025-11-27 23:57:24] 2025-11-28 04:56:15,183 | INFO     | current memory leak: 7.94 B/s (using 1429 data points, chi2=6.83)
[2025-11-27 23:57:24] 2025-11-28 04:56:15,184 | INFO     | could have reported an average CPU frequency of 2796 MHz (51 samples)
[2025-11-27 23:57:24] 2025-11-28 04:56:15,184 | INFO     | ..............................
[2025-11-27 23:57:24] 2025-11-28 04:56:15,184 | INFO     | . Timing measurements:
[2025-11-27 23:57:24] 2025-11-28 04:56:15,184 | INFO     | . get job = 1 s
[2025-11-27 23:57:24] 2025-11-28 04:56:15,184 | INFO     | . initial setup = 13 s
[2025-11-27 23:57:24] 2025-11-28 04:56:15,185 | INFO     | . payload setup = 71 s
[2025-11-27 23:57:24] 2025-11-28 04:56:15,185 | INFO     | . stage-in = 1 s
[2025-11-27 23:57:24] 2025-11-28 04:56:15,185 | INFO     | . payload execution = 88157 s
[2025-11-27 23:57:24] 2025-11-28 04:56:15,185 | INFO     | . stage-out = 5 s
[2025-11-27 23:57:24] 2025-11-28 04:56:15,185 | INFO     | . log creation = 0 s
[2025-11-27 23:57:24] 2025-11-28 04:56:15,185 | INFO     | ..............................
[2025-11-27 23:57:24] 2025-11-28 04:56:15,345 | INFO     | 
[2025-11-27 23:57:24] 2025-11-28 04:56:15,345 | INFO     | job summary report
[2025-11-27 23:57:24] 2025-11-28 04:56:15,345 | INFO     | --------------------------------------------------
[2025-11-27 23:57:24] 2025-11-28 04:56:15,345 | INFO     | PanDA job id: 6897394583
[2025-11-27 23:57:24] 2025-11-28 04:56:15,345 | INFO     | task id: 47556161
[2025-11-27 23:57:24] 2025-11-28 04:56:15,345 | INFO     | errors: (none)
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | pilot state: finished 
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | transexitcode: 0
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | exeerrorcode: 0
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | exeerrordiag: 
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | exitcode: 0
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | exitmsg: OK
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | cpuconsumptiontime: 252930 s
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | nevents: 1000
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | neventsw: 0
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | pid: 3894087
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | pgrp: 3894087
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | corecount: 9
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | event service: False
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | sizes: {0: 2283437, 2: 2284122, 3: 2284321, 14: 2284321, 25: 2284349, 36: 2284377, 49: 2284823, 61: 2284823, 88231: 2350188, 88237: 2359182, 88239: 2359238, 88255:
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | --------------------------------------------------
[2025-11-27 23:57:24] 2025-11-28 04:56:15,346 | INFO     | 
[2025-11-27 23:57:24] 2025-11-28 04:56:15,347 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 23:57:24] 2025-11-28 04:56:15,425 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,426 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,426 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,426 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,426 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,426 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,426 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,426 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,426 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,426 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,426 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,427 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,427 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,427 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,427 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,427 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,427 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,427 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:57:24] 2025-11-28 04:56:15,427 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,427 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:57:24] 2025-11-28 04:56:15,427 | INFO     | job 6897394583 has completed (purged errors)
[2025-11-27 23:57:24] 2025-11-28 04:56:15,428 | INFO     | overall cleanup function is called
[2025-11-27 23:57:24] 2025-11-28 04:56:16,522 | INFO     | --- collectZombieJob: --- 10, [3894087]
[2025-11-27 23:57:24] 2025-11-28 04:56:16,522 | INFO     | zombie collector waiting for pid 3894087
[2025-11-27 23:57:24] 2025-11-28 04:56:16,522 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:57:24] 2025-11-28 04:56:16,522 | INFO     | collected zombie processes
[2025-11-27 23:57:24] 2025-11-28 04:56:16,523 | INFO     | will attempt to kill all subprocesses of pid=3894087
[2025-11-27 23:57:24] 2025-11-28 04:56:17,076 | INFO     | process IDs to be killed: [3894087] (in reverse order)
[2025-11-27 23:57:24] 2025-11-28 04:56:17,316 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:57:24] 2025-11-28 04:56:17,316 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:57:24] 2025-11-28 04:56:17,330 | INFO     | did not find any defunct processes belonging to 3894087
[2025-11-27 23:57:24] 2025-11-28 04:56:17,342 | INFO     | did not find any defunct processes belonging to 3894087
[2025-11-27 23:57:24] 2025-11-28 04:56:17,343 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:57:24] 2025-11-28 04:56:17,343 | INFO     | ready for new job
[2025-11-27 23:57:24] 2025-11-28 04:56:17,343 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:57:24] 2025-11-28 04:56:17,349 | INFO     | ***************************************
[2025-11-27 23:57:24] 2025-11-28 04:56:17,349 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:57:24] 2025-11-28 04:56:17,350 | INFO     | ***************************************
[2025-11-27 23:57:24] 2025-11-28 04:56:17,350 | INFO     | 
[2025-11-27 23:57:24] 2025-11-28 04:56:17,352 | INFO     | architecture information:
[2025-11-27 23:57:24] 2025-11-28 04:56:17,353 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:57:24] 2025-11-28 04:56:17,373 | INFO     | cat /etc/os-release:
[2025-11-27 23:57:24] NAME="CentOS Linux"
[2025-11-27 23:57:24] VERSION="7 (Core)"
[2025-11-27 23:57:24] ID="centos"
[2025-11-27 23:57:24] ID_LIKE="rhel fedora"
[2025-11-27 23:57:24] VERSION_ID="7"
[2025-11-27 23:57:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:57:24] ANSI_COLOR="0;31"
[2025-11-27 23:57:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:57:24] HOME_URL="https://www.centos.org/"
[2025-11-27 23:57:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:57:24] 
[2025-11-27 23:57:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:57:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:57:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:57:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:57:24] 
[2025-11-27 23:57:24] 2025-11-28 04:56:17,373 | INFO     | ***************************************
[2025-11-27 23:57:24] 2025-11-28 04:56:17,876 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 23:57:24] 2025-11-28 04:56:17,999 | INFO     | sufficient remaining disk space (70586990592 B)
[2025-11-27 23:57:24] 2025-11-28 04:56:17,999 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:57:24] 2025-11-28 04:56:18,000 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:57:24] 2025-11-28 04:56:18,000 | INFO     | update_server=False
[2025-11-27 23:57:24] 2025-11-28 04:56:18,000 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:57:24] 2025-11-28 04:56:18,001 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:57:24] 2025-11-28 04:56:18,238 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:57:24] 2025-11-28 04:56:18,238 | INFO     | aborting loop
[2025-11-27 23:57:24] 2025-11-28 04:56:18,701 | INFO     | all job control threads have been joined
[2025-11-27 23:57:24] 2025-11-28 04:56:19,006 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:57:24] 2025-11-28 04:56:19,007 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:57:24] 2025-11-28 04:56:19,068 | INFO     | all data control threads have been joined
[2025-11-27 23:57:24] 2025-11-28 04:56:19,244 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:57:24] 2025-11-28 04:56:19,484 | INFO     | all payload control threads have been joined
[2025-11-27 23:57:24] 2025-11-28 04:56:19,511 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:57:24] 2025-11-28 04:56:19,518 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:57:24] 2025-11-28 04:56:19,625 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:57:24] 2025-11-28 04:56:19,707 | INFO     | [job] control thread has finished
[2025-11-27 23:57:24] 2025-11-28 04:56:19,895 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:57:24] 2025-11-28 04:56:20,008 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:57:24] 2025-11-28 04:56:20,074 | INFO     | [data] control thread has finished
[2025-11-27 23:57:24] 2025-11-28 04:56:20,234 | INFO     | [job] validate thread has finished
[2025-11-27 23:57:24] 2025-11-28 04:56:20,379 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:57:24] 2025-11-28 04:56:20,435 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:57:24] 2025-11-28 04:56:20,445 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:57:24] 2025-11-28 04:56:20,490 | INFO     | [payload] control thread has finished
[2025-11-27 23:57:24] 2025-11-28 04:56:21,385 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:57:24] 2025-11-28 04:56:23,023 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:57:24] 2025-11-28 04:56:28,369 | INFO     | job.realtimelogging is not enabled
[2025-11-27 23:57:24] 2025-11-28 04:56:29,375 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:57:24] 2025-11-28 04:56:49,776 | INFO     | PID=3884308 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 23:57:24] 2025-11-28 04:56:49,776 | INFO     | .. there are 24 such processes running
[2025-11-27 23:57:24] 2025-11-28 04:56:49,777 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:57:24] 2025-11-28 04:56:49,777 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:57:24] 2025-11-28 04:56:49,777 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:57:24] 2025-11-28 04:57:15,141 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:57:24] 2025-11-28 04:57:16,627 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140686498748224)>', '<ExcThread(monitor, started 140685990676224)>']
[2025-11-27 23:57:24] 2025-11-28 04:57:16,998 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:57:24] 2025-11-28 04:57:16,998 | INFO     | [monitor] control thread has ended
[2025-11-27 23:57:24] 2025-11-28 04:57:21,652 | INFO     | all workflow threads have been joined
[2025-11-27 23:57:24] 2025-11-28 04:57:21,652 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:57:24] 2025-11-28 04:57:21,653 | INFO     | traces error code: 0
[2025-11-27 23:57:24] 2025-11-28 04:57:21,653 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:57:24] 2025-11-28 04:57:22,121 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:57:24] 2025-11-28 04:57:22,147 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:57:24] 2025-11-28 04:57:22,183 [wrapper] pilotpid: 3884308
[2025-11-27 23:57:24] 2025-11-28 04:57:22,207 [wrapper] Pilot exit status: 0
[2025-11-27 23:57:24] 2025-11-28 04:57:22,350 [wrapper] pandaids: 6897394583
[2025-11-27 23:57:24] 2025-11-28 04:57:23,186 [wrapper] cleanup supervisor_pilot 3413401 3884309
[2025-11-27 23:57:24] 2025-11-28 04:57:23,192 [wrapper] Test setup, not cleaning
[2025-11-27 23:57:24] 2025-11-28 04:57:23,196 [wrapper] apfmon messages muted
[2025-11-27 23:57:24] 2025-11-28 04:57:23,212 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:57:24] 2025-11-28 04:57:23,228 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:57:24]  *** Error codes and diagnostics ***
[2025-11-27 23:57:24]     "exeErrorCode": 0,
[2025-11-27 23:57:24]     "exeErrorDiag": "",
[2025-11-27 23:57:24]     "pilotErrorCode": 0,
[2025-11-27 23:57:24]     "pilotErrorDiag": "",
[2025-11-27 23:57:24]  *** Listing of results directory ***
[2025-11-27 23:57:24] total 1338040
[2025-11-27 23:57:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 23:57:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 23:57:24] -rwx------. 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-27 23:57:24] -rw-r--r--. 1 boincer umatlas       100 Nov 26 23:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:57:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 23:21 run_atlas
[2025-11-27 23:57:24] -rw-r--r--. 1 boincer umatlas       105 Nov 26 23:21 job.xml
[2025-11-27 23:57:24] -rw-r--r--. 2 boincer umatlas 410849350 Nov 26 23:21 EVNT.47483658._002227.pool.root.1
[2025-11-27 23:57:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 23:21 start_atlas.sh
[2025-11-27 23:57:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 23:21 shared
[2025-11-27 23:57:24] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 23:21 input.tar.gz
[2025-11-27 23:57:24] -rw-r--r--. 1 boincer umatlas         0 Nov 26 23:21 boinc_lockfile
[2025-11-27 23:57:24] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 23:21 pandaJob.out
[2025-11-27 23:57:24] -rw-------. 1 boincer umatlas        57 Nov 26 23:22 setup.sh.local
[2025-11-27 23:57:24] -rw-------. 1 boincer umatlas    991570 Nov 26 23:23 agis_schedconf.cvmfs.json
[2025-11-27 23:57:24] drwx------. 5 boincer umatlas      4096 Nov 26 23:23 pilot3
[2025-11-27 23:57:24] -rw-r--r--. 1 boincer umatlas       533 Nov 27 23:33 boinc_task_state.xml
[2025-11-27 23:57:24] -rw-r--r--. 1 boincer umatlas      6841 Nov 27 23:47 init_data.xml
[2025-11-27 23:57:24] -rw-------. 1 boincer umatlas 927790681 Nov 27 23:55 HITS.47556161._002107.pool.root.1
[2025-11-27 23:57:24] -rw-------. 1 boincer umatlas      1058 Nov 27 23:55 memory_monitor_summary.json
[2025-11-27 23:57:24] -rw-------. 1 boincer umatlas   1516240 Nov 27 23:55 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:57:24] -rw-------. 1 boincer umatlas   2585726 Nov 27 23:55 log.47556161._002107.job.log.tgz.1
[2025-11-27 23:57:24] -rw-------. 1 boincer umatlas        95 Nov 27 23:55 pilot_heartbeat.json
[2025-11-27 23:57:24] -rw-------. 1 boincer umatlas      8620 Nov 27 23:56 heartbeat.json
[2025-11-27 23:57:24] -rw-r--r--. 1 boincer umatlas        29 Nov 27 23:57 wrapper_checkpoint.txt
[2025-11-27 23:57:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 23:57 boinc_mmap_file
[2025-11-27 23:57:24] -rw-------. 1 boincer umatlas      4896 Nov 27 23:57 pilotlog.txt
[2025-11-27 23:57:24] -rw-------. 1 boincer umatlas  11204077 Nov 27 23:57 log.47556161._002107.job.log.1
[2025-11-27 23:57:24] -rw-------. 1 boincer umatlas       353 Nov 27 23:57 output.list
[2025-11-27 23:57:24] -rw-r--r--. 1 boincer umatlas       620 Nov 27 23:57 runtime_log
[2025-11-27 23:57:24] -rw-------. 1 boincer umatlas  13813760 Nov 27 23:57 result.tar.gz
[2025-11-27 23:57:24] -rw-------. 1 boincer umatlas       660 Nov 27 23:57 xZRMDmDXBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRVMKDmkFc6yn.diag
[2025-11-27 23:57:24] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 23:57 runtime_log.err
[2025-11-27 23:57:24] -rw-r--r--. 1 boincer umatlas     21870 Nov 27 23:57 stderr.txt
[2025-11-27 23:57:24] HITS file was successfully produced:
[2025-11-27 23:57:24] -rw-------. 1 boincer umatlas 927790681 Nov 27 23:55 shared/HITS.pool.root.1
[2025-11-27 23:57:24]  *** Contents of shared directory: ***
[2025-11-27 23:57:24] total 1321368
[2025-11-27 23:57:24] -rw-r--r--. 2 boincer umatlas 410849350 Nov 26 23:21 ATLAS.root_0
[2025-11-27 23:57:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 23:21 start_atlas.sh
[2025-11-27 23:57:24] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 23:21 input.tar.gz
[2025-11-27 23:57:24] -rw-------. 1 boincer umatlas 927790681 Nov 27 23:55 HITS.pool.root.1
[2025-11-27 23:57:24] -rw-------. 1 boincer umatlas  13813760 Nov 27 23:57 result.tar.gz
23:57:25 (3879118): run_atlas exited; CPU time 254821.705014
23:57:25 (3879118): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN