Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:36 (995337): wrapper (7.7.26015): starting
00:04:36 (995337): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:04:36] Arguments: --nthreads 9
[2025-11-27 00:04:36] Threads: 9
[2025-11-27 00:04:36] Checking for CVMFS
[2025-11-27 00:04:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:04:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:04:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:04:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:04:38] 2.13.2.0 8790 36835 258772 153347 0 139 40540121 40960000 9276 16776704 0 36750774 99.660 31360306 39102 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:04:38] CVMFS is ok
[2025-11-27 00:04:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:04:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:04:38] Further information can be found at the LHC@home message board.
[2025-11-27 00:04:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:04:38] Checking for apptainer binary...
[2025-11-27 00:04:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:04:38] Running /usr/bin/apptainer --version
[2025-11-27 00:04:38] apptainer version 1.4.4-1.el9
[2025-11-27 00:04:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:04:38] c-210-33-1.aglt2.org
[2025-11-27 00:04:38] apptainer works
[2025-11-27 00:04:38] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:04:38] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:04:38] Starting ATLAS job with PandaID=6898120557
[2025-11-27 00:04:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:45:25]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:45:25] 2025-11-27 19:44:50,624 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 14:45:25] 2025-11-27 19:44:50,665 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2916.6384107142853
[2025-11-27 14:45:25] 2025-11-27 19:44:50,723 | INFO     | time since job start (52762s) is within the limit (172800.0s)
[2025-11-27 14:45:25] 2025-11-27 19:44:50,728 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6898120557/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:45:25] 2025-11-27 19:44:50,729 | INFO     | extracted standard info from prmon json
[2025-11-27 14:45:25] 2025-11-27 19:44:50,729 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:45:25] 2025-11-27 19:44:50,729 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:45:25] 2025-11-27 19:44:50,812 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:45:25] 2025-11-27 19:44:50,813 | INFO     | sum of square deviations: 199291723831.3049
[2025-11-27 14:45:25] 2025-11-27 19:44:50,848 | INFO     | sum of deviations: 1780971022878.3706
[2025-11-27 14:45:25] 2025-11-27 19:44:50,852 | INFO     | mean x: 1764246336.1657012
[2025-11-27 14:45:25] 2025-11-27 19:44:50,852 | INFO     | mean y: 3058470.444959444
[2025-11-27 14:45:25] 2025-11-27 19:44:50,853 | INFO     | intersect: -15763133629.885939
[2025-11-27 14:45:25] 2025-11-27 19:44:50,854 | INFO     | chi2: 9.436659020686443
[2025-11-27 14:45:25] 2025-11-27 19:44:50,855 | INFO     | sum of square deviations: 195848219975.21664
[2025-11-27 14:45:25] 2025-11-27 19:44:50,885 | INFO     | sum of deviations: 2099109276493.0498
[2025-11-27 14:45:25] 2025-11-27 19:44:50,886 | INFO     | mean x: 1764246183.6783216
[2025-11-27 14:45:25] 2025-11-27 19:44:50,886 | INFO     | mean y: 3072557.061771562
[2025-11-27 14:45:25] 2025-11-27 19:44:50,886 | INFO     | intersect: -18906190599.096916
[2025-11-27 14:45:25] 2025-11-27 19:44:50,891 | INFO     | chi2: 6.054007372076738
[2025-11-27 14:45:25] 2025-11-27 19:44:50,891 | INFO     | current chi2=6.054007372076738 (change=35.84586071399286 %)
[2025-11-27 14:45:25] 2025-11-27 19:44:50,893 | INFO     | sum of square deviations: 192444519052.61105
[2025-11-27 14:45:25] 2025-11-27 19:44:50,919 | INFO     | sum of deviations: 2271893369948.919
[2025-11-27 14:45:25] 2025-11-27 19:44:50,923 | INFO     | mean x: 1764246031.1887455
[2025-11-27 14:45:25] 2025-11-27 19:44:50,923 | INFO     | mean y: 3080298.0750293084
[2025-11-27 14:45:25] 2025-11-27 19:44:50,924 | INFO     | intersect: -20824630883.040173
[2025-11-27 14:45:25] 2025-11-27 19:44:50,925 | INFO     | chi2: 4.894245765438825
[2025-11-27 14:45:25] 2025-11-27 19:44:50,925 | INFO     | current chi2=4.894245765438825 (change=19.156924254621014 %)
[2025-11-27 14:45:25] 2025-11-27 19:44:50,925 | INFO     | right removable region: 852
[2025-11-27 14:45:25] 2025-11-27 19:44:50,926 | INFO     | sum of square deviations: 195847079885.2167
[2025-11-27 14:45:25] 2025-11-27 19:44:50,956 | INFO     | sum of deviations: 1465172342897.539
[2025-11-27 14:45:25] 2025-11-27 19:44:50,957 | INFO     | mean x: 1764246488.6783216
[2025-11-27 14:45:25] 2025-11-27 19:44:50,957 | INFO     | mean y: 3072444.346153846
[2025-11-27 14:45:25] 2025-11-27 19:44:50,957 | INFO     | intersect: -13195618916.18147
[2025-11-27 14:45:25] 2025-11-27 19:44:50,958 | INFO     | chi2: 6.378988632299126
[2025-11-27 14:45:25] 2025-11-27 19:44:50,962 | INFO     | current chi2=6.378988632299126 (change=32.40204379202944 %)
[2025-11-27 14:45:25] 2025-11-27 19:44:50,963 | INFO     | sum of square deviations: 192442500075.98822
[2025-11-27 14:45:25] 2025-11-27 19:44:50,989 | INFO     | sum of deviations: 1294985975272.238
[2025-11-27 14:45:25] 2025-11-27 19:44:50,990 | INFO     | mean x: 1764246641.1875732
[2025-11-27 14:45:25] 2025-11-27 19:44:50,990 | INFO     | mean y: 3080059.2110199295
[2025-11-27 14:45:25] 2025-11-27 19:44:50,990 | INFO     | intersect: -11868905891.693424
[2025-11-27 14:45:25] 2025-11-27 19:44:50,995 | INFO     | chi2: 5.514729350969872
[2025-11-27 14:45:25] 2025-11-27 19:44:50,995 | INFO     | current chi2=5.514729350969872 (change=13.548531454550595 %)
[2025-11-27 14:45:25] 2025-11-27 19:44:50,996 | INFO     | left removable region: 20
[2025-11-27 14:45:25] 2025-11-27 19:44:50,997 | INFO     | sum of square deviations: 178576018988.15237
[2025-11-27 14:45:25] 2025-11-27 19:44:51,026 | INFO     | sum of deviations: 1668881190537.6433
[2025-11-27 14:45:25] 2025-11-27 19:44:51,026 | INFO     | mean x: 1764246610.7295673
[2025-11-27 14:45:25] 2025-11-27 19:44:51,027 | INFO     | mean y: 3110640.7584134615
[2025-11-27 14:45:25] 2025-11-27 19:44:51,027 | INFO     | intersect: -16484646230.513887
[2025-11-27 14:45:25] 2025-11-27 19:44:51,028 | INFO     | chi2: 0.6194008140265999
[2025-11-27 14:45:25] 2025-11-27 19:44:51,028 | INFO     | current memory leak: 9.35 B/s (using 832 data points, chi2=0.62)
[2025-11-27 14:45:25] 2025-11-27 19:44:51,029 | INFO     | could have reported an average CPU frequency of 2853 MHz (32 samples)
[2025-11-27 14:45:25] 2025-11-27 19:44:51,029 | INFO     | ..............................
[2025-11-27 14:45:25] 2025-11-27 19:44:51,029 | INFO     | . Timing measurements:
[2025-11-27 14:45:25] 2025-11-27 19:44:51,029 | INFO     | . get job = 0 s
[2025-11-27 14:45:25] 2025-11-27 19:44:51,029 | INFO     | . initial setup = 3 s
[2025-11-27 14:45:25] 2025-11-27 19:44:51,029 | INFO     | . payload setup = 35 s
[2025-11-27 14:45:25] 2025-11-27 19:44:51,029 | INFO     | . stage-in = 0 s
[2025-11-27 14:45:25] 2025-11-27 19:44:51,029 | INFO     | . payload execution = 52640 s
[2025-11-27 14:45:25] 2025-11-27 19:44:51,030 | INFO     | . stage-out = 5 s
[2025-11-27 14:45:25] 2025-11-27 19:44:51,030 | INFO     | . log creation = 1 s
[2025-11-27 14:45:25] 2025-11-27 19:44:51,030 | INFO     | ..............................
[2025-11-27 14:45:25] 2025-11-27 19:44:51,210 | INFO     | 
[2025-11-27 14:45:25] 2025-11-27 19:44:51,211 | INFO     | job summary report
[2025-11-27 14:45:25] 2025-11-27 19:44:51,211 | INFO     | --------------------------------------------------
[2025-11-27 14:45:25] 2025-11-27 19:44:51,211 | INFO     | PanDA job id: 6898120557
[2025-11-27 14:45:25] 2025-11-27 19:44:51,211 | INFO     | task id: 47556161
[2025-11-27 14:45:25] 2025-11-27 19:44:51,211 | INFO     | errors: (none)
[2025-11-27 14:45:25] 2025-11-27 19:44:51,211 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:45:25] 2025-11-27 19:44:51,211 | INFO     | pilot state: finished 
[2025-11-27 14:45:25] 2025-11-27 19:44:51,211 | INFO     | transexitcode: 0
[2025-11-27 14:45:25] 2025-11-27 19:44:51,211 | INFO     | exeerrorcode: 0
[2025-11-27 14:45:25] 2025-11-27 19:44:51,211 | INFO     | exeerrordiag: 
[2025-11-27 14:45:25] 2025-11-27 19:44:51,211 | INFO     | exitcode: 0
[2025-11-27 14:45:25] 2025-11-27 19:44:51,211 | INFO     | exitmsg: OK
[2025-11-27 14:45:25] 2025-11-27 19:44:51,211 | INFO     | cpuconsumptiontime: 241526 s
[2025-11-27 14:45:25] 2025-11-27 19:44:51,212 | INFO     | nevents: 1000
[2025-11-27 14:45:25] 2025-11-27 19:44:51,212 | INFO     | neventsw: 0
[2025-11-27 14:45:25] 2025-11-27 19:44:51,212 | INFO     | pid: 1016888
[2025-11-27 14:45:25] 2025-11-27 19:44:51,212 | INFO     | pgrp: 1016888
[2025-11-27 14:45:25] 2025-11-27 19:44:51,212 | INFO     | corecount: 9
[2025-11-27 14:45:25] 2025-11-27 19:44:51,212 | INFO     | event service: False
[2025-11-27 14:45:25] 2025-11-27 19:44:51,212 | INFO     | sizes: {0: 2284264, 11: 2284264, 22: 2284292, 24: 2284582, 33: 2284610, 52680: 2335345, 52687: 2344339, 52690: 2344395, 52707: 2344641}
[2025-11-27 14:45:25] 2025-11-27 19:44:51,212 | INFO     | --------------------------------------------------
[2025-11-27 14:45:25] 2025-11-27 19:44:51,212 | INFO     | 
[2025-11-27 14:45:25] 2025-11-27 19:44:51,212 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 14:45:25] 2025-11-27 19:44:51,334 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,335 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,335 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,335 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,335 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,335 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,335 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,335 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,335 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,335 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,335 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,335 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,335 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,335 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,336 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,336 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,336 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,336 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:45:25] 2025-11-27 19:44:51,336 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,336 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:45:25] 2025-11-27 19:44:51,336 | INFO     | job 6898120557 has completed (purged errors)
[2025-11-27 14:45:25] 2025-11-27 19:44:51,337 | INFO     | overall cleanup function is called
[2025-11-27 14:45:25] 2025-11-27 19:44:52,375 | INFO     | --- collectZombieJob: --- 10, [1016888]
[2025-11-27 14:45:25] 2025-11-27 19:44:52,375 | INFO     | zombie collector waiting for pid 1016888
[2025-11-27 14:45:25] 2025-11-27 19:44:52,376 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:45:25] 2025-11-27 19:44:52,376 | INFO     | collected zombie processes
[2025-11-27 14:45:25] 2025-11-27 19:44:52,376 | INFO     | will attempt to kill all subprocesses of pid=1016888
[2025-11-27 14:45:25] 2025-11-27 19:44:53,284 | INFO     | process IDs to be killed: [1016888] (in reverse order)
[2025-11-27 14:45:25] 2025-11-27 19:44:53,467 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:45:25] 2025-11-27 19:44:53,467 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:45:25] 2025-11-27 19:44:53,489 | INFO     | did not find any defunct processes belonging to 1016888
[2025-11-27 14:45:25] 2025-11-27 19:44:53,511 | INFO     | did not find any defunct processes belonging to 1016888
[2025-11-27 14:45:25] 2025-11-27 19:44:53,516 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:45:25] 2025-11-27 19:44:53,517 | INFO     | ready for new job
[2025-11-27 14:45:25] 2025-11-27 19:44:53,517 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:45:25] 2025-11-27 19:44:53,521 | INFO     | ***************************************
[2025-11-27 14:45:25] 2025-11-27 19:44:53,521 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:45:25] 2025-11-27 19:44:53,522 | INFO     | ***************************************
[2025-11-27 14:45:25] 2025-11-27 19:44:53,522 | INFO     | 
[2025-11-27 14:45:25] 2025-11-27 19:44:53,532 | INFO     | architecture information:
[2025-11-27 14:45:25] 2025-11-27 19:44:53,533 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:45:25] 2025-11-27 19:44:53,586 | INFO     | cat /etc/os-release:
[2025-11-27 14:45:25] NAME="CentOS Linux"
[2025-11-27 14:45:25] VERSION="7 (Core)"
[2025-11-27 14:45:25] ID="centos"
[2025-11-27 14:45:25] ID_LIKE="rhel fedora"
[2025-11-27 14:45:25] VERSION_ID="7"
[2025-11-27 14:45:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:45:25] ANSI_COLOR="0;31"
[2025-11-27 14:45:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:45:25] HOME_URL="https://www.centos.org/"
[2025-11-27 14:45:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:45:25] 
[2025-11-27 14:45:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:45:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:45:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:45:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:45:25] 
[2025-11-27 14:45:25] 2025-11-27 19:44:53,587 | INFO     | ***************************************
[2025-11-27 14:45:25] 2025-11-27 19:44:54,091 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 14:45:25] 2025-11-27 19:44:54,118 | INFO     | sufficient remaining disk space (69609717760 B)
[2025-11-27 14:45:25] 2025-11-27 19:44:54,119 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:45:25] 2025-11-27 19:44:54,119 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:45:25] 2025-11-27 19:44:54,120 | INFO     | update_server=False
[2025-11-27 14:45:25] 2025-11-27 19:44:54,120 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:45:25] 2025-11-27 19:44:54,120 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:45:25] 2025-11-27 19:44:54,121 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:45:25] 2025-11-27 19:44:54,318 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 14:45:25] 2025-11-27 19:44:54,319 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 14:45:25] 2025-11-27 19:44:54,319 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:45:25] 2025-11-27 19:44:54,319 | INFO     | will abort loop
[2025-11-27 14:45:25] 2025-11-27 19:44:54,728 | INFO     | all payload control threads have been joined
[2025-11-27 14:45:25] 2025-11-27 19:44:54,874 | INFO     | all job control threads have been joined
[2025-11-27 14:45:25] 2025-11-27 19:44:55,040 | INFO     | all data control threads have been joined
[2025-11-27 14:45:25] 2025-11-27 19:44:55,126 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:45:25] 2025-11-27 19:44:55,325 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:45:25] 2025-11-27 19:44:55,582 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:45:25] 2025-11-27 19:44:55,614 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:45:25] 2025-11-27 19:44:55,684 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:45:25] 2025-11-27 19:44:55,733 | INFO     | [payload] control thread has finished
[2025-11-27 14:45:25] 2025-11-27 19:44:55,842 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:45:25] 2025-11-27 19:44:55,878 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:45:25] 2025-11-27 19:44:55,881 | INFO     | [job] control thread has finished
[2025-11-27 14:45:25] 2025-11-27 19:44:55,884 | INFO     | [job] validate thread has finished
[2025-11-27 14:45:25] 2025-11-27 19:44:56,088 | INFO     | [data] control thread has finished
[2025-11-27 14:45:25] 2025-11-27 19:44:56,126 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:45:25] 2025-11-27 19:44:56,233 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:45:25] 2025-11-27 19:44:56,257 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:45:25] 2025-11-27 19:44:56,439 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:45:25] 2025-11-27 19:44:57,239 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:45:25] 2025-11-27 19:44:58,128 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:45:25] 2025-11-27 19:45:01,187 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:45:25] 2025-11-27 19:45:02,004 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140312032491328)>', '<ExcThread(monitor, started 140311397390080)>']
[2025-11-27 14:45:25] 2025-11-27 19:45:07,030 | INFO     | all workflow threads have been joined
[2025-11-27 14:45:25] 2025-11-27 19:45:07,030 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:45:25] 2025-11-27 19:45:07,031 | INFO     | traces error code: 0
[2025-11-27 14:45:25] 2025-11-27 19:45:07,031 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:45:25] 2025-11-27 19:45:24,713 | INFO     | PID=1003578 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:45:25] 2025-11-27 19:45:24,714 | INFO     | .. there are 12 such processes running
[2025-11-27 14:45:25] 2025-11-27 19:45:24,714 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:45:25] 2025-11-27 19:45:24,718 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:45:25] 2025-11-27 19:45:24,718 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:45:25] 2025-11-27 19:45:24,718 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:45:25] 2025-11-27 19:45:24,719 | INFO     | [monitor] control thread has ended
[2025-11-27 14:45:25] 2025-11-27 19:45:25,131 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:45:25] 2025-11-27 19:45:25,134 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:45:25] 2025-11-27 19:45:25,138 [wrapper] pilotpid: 1003578
[2025-11-27 14:45:25] 2025-11-27 19:45:25,141 [wrapper] Pilot exit status: 0
[2025-11-27 14:45:25] 2025-11-27 19:45:25,156 [wrapper] pandaids: 6898120557
[2025-11-27 14:45:25] 2025-11-27 19:45:25,217 [wrapper] cleanup supervisor_pilot 3278645 1003579
[2025-11-27 14:45:25] 2025-11-27 19:45:25,220 [wrapper] Test setup, not cleaning
[2025-11-27 14:45:25] 2025-11-27 19:45:25,223 [wrapper] apfmon messages muted
[2025-11-27 14:45:25] 2025-11-27 19:45:25,226 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:45:25] 2025-11-27 19:45:25,228 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:45:25]  *** Error codes and diagnostics ***
[2025-11-27 14:45:25]     "exeErrorCode": 0,
[2025-11-27 14:45:25]     "exeErrorDiag": "",
[2025-11-27 14:45:25]     "pilotErrorCode": 0,
[2025-11-27 14:45:25]     "pilotErrorDiag": "",
[2025-11-27 14:45:25]  *** Listing of results directory ***
[2025-11-27 14:45:25] total 1334268
[2025-11-27 14:45:25] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 14:45:25] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:36 queuedata.json
[2025-11-27 14:45:25] -rwx------. 1 boincer umatlas     36292 Nov 25 22:39 runpilot2-wrapper.sh
[2025-11-27 14:45:25] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:45:25] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:04 run_atlas
[2025-11-27 14:45:25] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:04 job.xml
[2025-11-27 14:45:25] -rw-r--r--. 2 boincer umatlas 409764017 Nov 27 00:04 EVNT.47483658._002436.pool.root.1
[2025-11-27 14:45:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 14:45:25] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:04 shared
[2025-11-27 14:45:25] -rw-r--r--. 2 boincer umatlas    590108 Nov 27 00:04 input.tar.gz
[2025-11-27 14:45:25] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:04 boinc_lockfile
[2025-11-27 14:45:25] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:04 pandaJob.out
[2025-11-27 14:45:25] -rw-------. 1 boincer umatlas        57 Nov 27 00:04 setup.sh.local
[2025-11-27 14:45:25] -rw-------. 1 boincer umatlas    991570 Nov 27 00:05 agis_schedconf.cvmfs.json
[2025-11-27 14:45:25] drwx------. 5 boincer umatlas      4096 Nov 27 00:05 pilot3
[2025-11-27 14:45:25] -rw-r--r--. 1 boincer umatlas       533 Nov 27 14:28 boinc_task_state.xml
[2025-11-27 14:45:25] -rw-r--r--. 1 boincer umatlas      6843 Nov 27 14:39 init_data.xml
[2025-11-27 14:45:25] -rw-------. 1 boincer umatlas 934131310 Nov 27 14:43 HITS.47556161._004190.pool.root.1
[2025-11-27 14:45:25] -rw-------. 1 boincer umatlas      1058 Nov 27 14:44 memory_monitor_summary.json
[2025-11-27 14:45:25] -rw-------. 1 boincer umatlas   1516240 Nov 27 14:44 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:45:25] -rw-------. 1 boincer umatlas   2185453 Nov 27 14:44 log.47556161._004190.job.log.tgz.1
[2025-11-27 14:45:25] -rw-------. 1 boincer umatlas        95 Nov 27 14:44 pilot_heartbeat.json
[2025-11-27 14:45:25] -rw-------. 1 boincer umatlas      8636 Nov 27 14:44 heartbeat.json
[2025-11-27 14:45:25] -rw-r--r--. 1 boincer umatlas        29 Nov 27 14:45 wrapper_checkpoint.txt
[2025-11-27 14:45:25] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 14:45 boinc_mmap_file
[2025-11-27 14:45:25] -rw-------. 1 boincer umatlas       823 Nov 27 14:45 pilotlog.txt
[2025-11-27 14:45:25] -rw-------. 1 boincer umatlas   7053186 Nov 27 14:45 log.47556161._004190.job.log.1
[2025-11-27 14:45:25] -rw-------. 1 boincer umatlas       353 Nov 27 14:45 output.list
[2025-11-27 14:45:25] -rw-r--r--. 1 boincer umatlas       620 Nov 27 14:45 runtime_log
[2025-11-27 14:45:25] -rw-------. 1 boincer umatlas   9256960 Nov 27 14:45 result.tar.gz
[2025-11-27 14:45:25] -rw-r--r--. 1 boincer umatlas      9353 Nov 27 14:45 runtime_log.err
[2025-11-27 14:45:25] -rw-------. 1 boincer umatlas       662 Nov 27 14:45 eTNLDmsYLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZrJKDmobGWmn.diag
[2025-11-27 14:45:25] -rw-r--r--. 1 boincer umatlas     21329 Nov 27 14:45 stderr.txt
[2025-11-27 14:45:25] HITS file was successfully produced:
[2025-11-27 14:45:25] -rw-------. 1 boincer umatlas 934131310 Nov 27 14:43 shared/HITS.pool.root.1
[2025-11-27 14:45:25]  *** Contents of shared directory: ***
[2025-11-27 14:45:25] total 1322048
[2025-11-27 14:45:25] -rw-r--r--. 2 boincer umatlas 409764017 Nov 27 00:04 ATLAS.root_0
[2025-11-27 14:45:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 14:45:25] -rw-r--r--. 2 boincer umatlas    590108 Nov 27 00:04 input.tar.gz
[2025-11-27 14:45:25] -rw-------. 1 boincer umatlas 934131310 Nov 27 14:43 HITS.pool.root.1
[2025-11-27 14:45:25] -rw-------. 1 boincer umatlas   9256960 Nov 27 14:45 result.tar.gz
14:45:27 (995337): run_atlas exited; CPU time 242186.725649
14:45:27 (995337): called boinc_finish(0)

</stderr_txt>
]]>

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