Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:10 (3490429): wrapper (7.7.26015): starting
00:00:10 (3490429): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:00:10] Arguments: --nthreads 12
[2025-11-27 00:00:10] Threads: 12
[2025-11-27 00:00:10] Checking for CVMFS
[2025-11-27 00:00:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:00:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:00:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:00:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:00:11] 2.13.3.0 11338 30908 256528 153347 1 670 17413998 32935936 48212 16776704 0 161779076 99.541 189414446 38523 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:00:11] CVMFS is ok
[2025-11-27 00:00:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:00:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:00:11] Further information can be found at the LHC@home message board.
[2025-11-27 00:00:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:00:11] Checking for apptainer binary...
[2025-11-27 00:00:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:00:11] Running /usr/bin/apptainer --version
[2025-11-27 00:00:11] apptainer version 1.4.4-1.el9
[2025-11-27 00:00:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:00:11] c7-3-17.aglt2.org
[2025-11-27 00:00:11] apptainer works
[2025-11-27 00:00:11] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:00:11] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:00:11] Starting ATLAS job with PandaID=6898120494
[2025-11-27 00:00:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:05:07]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:05:07] 2025-11-27 16:04:29,183 | INFO     | monitor loop #2189: job 0:6898120494 is in state 'finished'
[2025-11-27 11:05:07] 2025-11-27 16:04:29,184 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:05:07] 2025-11-27 16:04:29,417 | INFO     | time since job start (39837s) is within the limit (172800.0s)
[2025-11-27 11:05:07] 2025-11-27 16:04:29,938 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 11:05:07] 2025-11-27 16:04:30,012 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3105.129531249999
[2025-11-27 11:05:07] 2025-11-27 16:04:30,035 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6898120494/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 11:05:07] 2025-11-27 16:04:30,036 | INFO     | extracted standard info from prmon json
[2025-11-27 11:05:07] 2025-11-27 16:04:30,037 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 11:05:07] 2025-11-27 16:04:30,037 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 11:05:07] 2025-11-27 16:04:30,063 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:05:07] 2025-11-27 16:04:30,064 | INFO     | sum of square deviations: 86334369184.04257
[2025-11-27 11:05:07] 2025-11-27 16:04:30,118 | INFO     | sum of deviations: 835209458880.2067
[2025-11-27 11:05:07] 2025-11-27 16:04:30,118 | INFO     | mean x: 1764239558.9617152
[2025-11-27 11:05:07] 2025-11-27 16:04:30,118 | INFO     | mean y: 3458595.528330781
[2025-11-27 11:05:07] 2025-11-27 16:04:30,118 | INFO     | intersect: -17064015010.890535
[2025-11-27 11:05:07] 2025-11-27 16:04:30,119 | INFO     | chi2: 7.28759982638673
[2025-11-27 11:05:07] 2025-11-27 16:04:30,120 | INFO     | sum of square deviations: 84366574129.6529
[2025-11-27 11:05:07] 2025-11-27 16:04:30,145 | INFO     | sum of deviations: 1114116331390.6067
[2025-11-27 11:05:07] 2025-11-27 16:04:30,145 | INFO     | mean x: 1764239406.476852
[2025-11-27 11:05:07] 2025-11-27 16:04:30,145 | INFO     | mean y: 3480203.473765432
[2025-11-27 11:05:07] 2025-11-27 16:04:30,145 | INFO     | intersect: -23294466353.157604
[2025-11-27 11:05:07] 2025-11-27 16:04:30,146 | INFO     | chi2: 3.778193632687268
[2025-11-27 11:05:07] 2025-11-27 16:04:30,146 | INFO     | current chi2=3.778193632687268 (change=48.15585758417615 %)
[2025-11-27 11:05:07] 2025-11-27 16:04:30,147 | INFO     | sum of square deviations: 82428919174.961
[2025-11-27 11:05:07] 2025-11-27 16:04:30,151 | INFO     | sum of deviations: 1230959584090.5317
[2025-11-27 11:05:07] 2025-11-27 16:04:30,151 | INFO     | mean x: 1764239253.992224
[2025-11-27 11:05:07] 2025-11-27 16:04:30,151 | INFO     | mean y: 3489384.306376361
[2025-11-27 11:05:07] 2025-11-27 16:04:30,151 | INFO     | intersect: -26342934177.56105
[2025-11-27 11:05:07] 2025-11-27 16:04:30,151 | INFO     | chi2: 2.955029159847168
[2025-11-27 11:05:07] 2025-11-27 16:04:30,152 | INFO     | current chi2=2.955029159847168 (change=21.78724948659177 %)
[2025-11-27 11:05:07] 2025-11-27 16:04:30,152 | INFO     | right removable region: 642
[2025-11-27 11:05:07] 2025-11-27 16:04:30,152 | INFO     | sum of square deviations: 84365832311.60507
[2025-11-27 11:05:07] 2025-11-27 16:04:30,157 | INFO     | sum of deviations: 607836472441.236
[2025-11-27 11:05:07] 2025-11-27 16:04:30,157 | INFO     | mean x: 1764239711.4753087
[2025-11-27 11:05:07] 2025-11-27 16:04:30,157 | INFO     | mean y: 3476183.077160494
[2025-11-27 11:05:07] 2025-11-27 16:04:30,158 | INFO     | intersect: -12707466308.464931
[2025-11-27 11:05:07] 2025-11-27 16:04:30,158 | INFO     | chi2: 4.894460765964115
[2025-11-27 11:05:07] 2025-11-27 16:04:30,158 | INFO     | current chi2=4.894460765964115 (change=32.8385081156296 %)
[2025-11-27 11:05:07] 2025-11-27 16:04:30,158 | INFO     | sum of square deviations: 82427593906.81168
[2025-11-27 11:05:07] 2025-11-27 16:04:30,163 | INFO     | sum of deviations: 546764795733.4039
[2025-11-27 11:05:07] 2025-11-27 16:04:30,163 | INFO     | mean x: 1764239863.9828928
[2025-11-27 11:05:07] 2025-11-27 16:04:30,163 | INFO     | mean y: 3480987.309486781
[2025-11-27 11:05:07] 2025-11-27 16:04:30,163 | INFO     | intersect: -11699205008.182367
[2025-11-27 11:05:07] 2025-11-27 16:04:30,163 | INFO     | chi2: 4.806780465186217
[2025-11-27 11:05:07] 2025-11-27 16:04:30,164 | INFO     | current chi2=4.806780465186217 (change=1.7914190136658725 %)
[2025-11-27 11:05:07] 2025-11-27 16:04:30,164 | INFO     | left removable region: 20
[2025-11-27 11:05:07] 2025-11-27 16:04:30,164 | INFO     | sum of square deviations: 74612797169.49367
[2025-11-27 11:05:07] 2025-11-27 16:04:30,168 | INFO     | sum of deviations: 849559184309.2404
[2025-11-27 11:05:07] 2025-11-27 16:04:30,168 | INFO     | mean x: 1764239833.5032156
[2025-11-27 11:05:07] 2025-11-27 16:04:30,168 | INFO     | mean y: 3521967.379421222
[2025-11-27 11:05:07] 2025-11-27 16:04:30,168 | INFO     | intersect: -20084535453.548832
[2025-11-27 11:05:07] 2025-11-27 16:04:30,169 | INFO     | chi2: 0.31455097607294685
[2025-11-27 11:05:07] 2025-11-27 16:04:30,169 | INFO     | current memory leak: 11.39 B/s (using 622 data points, chi2=0.31)
[2025-11-27 11:05:07] 2025-11-27 16:04:30,169 | INFO     | could have reported an average CPU frequency of 3108 MHz (25 samples)
[2025-11-27 11:05:07] 2025-11-27 16:04:30,169 | INFO     | ..............................
[2025-11-27 11:05:07] 2025-11-27 16:04:30,169 | INFO     | . Timing measurements:
[2025-11-27 11:05:07] 2025-11-27 16:04:30,169 | INFO     | . get job = 0 s
[2025-11-27 11:05:07] 2025-11-27 16:04:30,170 | INFO     | . initial setup = 3 s
[2025-11-27 11:05:07] 2025-11-27 16:04:30,170 | INFO     | . payload setup = 10 s
[2025-11-27 11:05:07] 2025-11-27 16:04:30,170 | INFO     | . stage-in = 0 s
[2025-11-27 11:05:07] 2025-11-27 16:04:30,170 | INFO     | . payload execution = 39786 s
[2025-11-27 11:05:07] 2025-11-27 16:04:30,170 | INFO     | . stage-out = 5 s
[2025-11-27 11:05:07] 2025-11-27 16:04:30,170 | INFO     | . log creation = 1 s
[2025-11-27 11:05:07] 2025-11-27 16:04:30,170 | INFO     | ..............................
[2025-11-27 11:05:07] 2025-11-27 16:04:30,359 | INFO     | 
[2025-11-27 11:05:07] 2025-11-27 16:04:30,359 | INFO     | job summary report
[2025-11-27 11:05:07] 2025-11-27 16:04:30,359 | INFO     | --------------------------------------------------
[2025-11-27 11:05:07] 2025-11-27 16:04:30,359 | INFO     | PanDA job id: 6898120494
[2025-11-27 11:05:07] 2025-11-27 16:04:30,359 | INFO     | task id: 47556161
[2025-11-27 11:05:07] 2025-11-27 16:04:30,360 | INFO     | errors: (none)
[2025-11-27 11:05:07] 2025-11-27 16:04:30,360 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:05:07] 2025-11-27 16:04:30,360 | INFO     | pilot state: finished 
[2025-11-27 11:05:07] 2025-11-27 16:04:30,360 | INFO     | transexitcode: 0
[2025-11-27 11:05:07] 2025-11-27 16:04:30,360 | INFO     | exeerrorcode: 0
[2025-11-27 11:05:07] 2025-11-27 16:04:30,360 | INFO     | exeerrordiag: 
[2025-11-27 11:05:07] 2025-11-27 16:04:30,360 | INFO     | exitcode: 0
[2025-11-27 11:05:07] 2025-11-27 16:04:30,360 | INFO     | exitmsg: OK
[2025-11-27 11:05:07] 2025-11-27 16:04:30,360 | INFO     | cpuconsumptiontime: 200775 s
[2025-11-27 11:05:07] 2025-11-27 16:04:30,360 | INFO     | nevents: 1000
[2025-11-27 11:05:07] 2025-11-27 16:04:30,360 | INFO     | neventsw: 0
[2025-11-27 11:05:07] 2025-11-27 16:04:30,360 | INFO     | pid: 3514492
[2025-11-27 11:05:07] 2025-11-27 16:04:30,360 | INFO     | pgrp: 3514492
[2025-11-27 11:05:07] 2025-11-27 16:04:30,360 | INFO     | corecount: 12
[2025-11-27 11:05:07] 2025-11-27 16:04:30,361 | INFO     | event service: False
[2025-11-27 11:05:07] 2025-11-27 16:04:30,361 | INFO     | sizes: {0: 2284264, 1: 2284292, 10: 2284554, 11: 2284582, 39799: 2327703, 39806: 2336697, 39809: 2336881, 39819: 2337191}
[2025-11-27 11:05:07] 2025-11-27 16:04:30,361 | INFO     | --------------------------------------------------
[2025-11-27 11:05:07] 2025-11-27 16:04:30,361 | INFO     | 
[2025-11-27 11:05:07] 2025-11-27 16:04:30,361 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 11:05:07] 2025-11-27 16:04:30,381 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,382 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,382 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,382 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,382 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,382 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,382 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,382 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,382 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,382 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,382 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,383 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,383 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,383 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,383 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,383 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,383 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,383 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:05:07] 2025-11-27 16:04:30,383 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,383 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:05:07] 2025-11-27 16:04:30,383 | INFO     | job 6898120494 has completed (purged errors)
[2025-11-27 11:05:07] 2025-11-27 16:04:30,384 | INFO     | overall cleanup function is called
[2025-11-27 11:05:07] 2025-11-27 16:04:31,426 | INFO     | --- collectZombieJob: --- 10, [3514492]
[2025-11-27 11:05:07] 2025-11-27 16:04:31,427 | INFO     | zombie collector waiting for pid 3514492
[2025-11-27 11:05:07] 2025-11-27 16:04:31,427 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:05:07] 2025-11-27 16:04:31,427 | INFO     | collected zombie processes
[2025-11-27 11:05:07] 2025-11-27 16:04:31,427 | INFO     | will attempt to kill all subprocesses of pid=3514492
[2025-11-27 11:05:07] 2025-11-27 16:04:34,049 | INFO     | process IDs to be killed: [3514492] (in reverse order)
[2025-11-27 11:05:07] 2025-11-27 16:04:34,302 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:05:07] 2025-11-27 16:04:34,303 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:05:07] 2025-11-27 16:04:34,384 | INFO     | did not find any defunct processes belonging to 3514492
[2025-11-27 11:05:07] 2025-11-27 16:04:34,630 | INFO     | did not find any defunct processes belonging to 3514492
[2025-11-27 11:05:07] 2025-11-27 16:04:34,655 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:05:07] 2025-11-27 16:04:34,655 | INFO     | ready for new job
[2025-11-27 11:05:07] 2025-11-27 16:04:34,656 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:05:07] 2025-11-27 16:04:34,676 | INFO     | ***************************************
[2025-11-27 11:05:07] 2025-11-27 16:04:34,676 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:05:07] 2025-11-27 16:04:34,676 | INFO     | ***************************************
[2025-11-27 11:05:07] 2025-11-27 16:04:34,676 | INFO     | 
[2025-11-27 11:05:07] 2025-11-27 16:04:34,698 | INFO     | architecture information:
[2025-11-27 11:05:07] 2025-11-27 16:04:34,722 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:05:07] 2025-11-27 16:04:34,772 | INFO     | cat /etc/os-release:
[2025-11-27 11:05:07] NAME="CentOS Linux"
[2025-11-27 11:05:07] VERSION="7 (Core)"
[2025-11-27 11:05:07] ID="centos"
[2025-11-27 11:05:07] ID_LIKE="rhel fedora"
[2025-11-27 11:05:07] VERSION_ID="7"
[2025-11-27 11:05:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:05:07] ANSI_COLOR="0;31"
[2025-11-27 11:05:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:05:07] HOME_URL="https://www.centos.org/"
[2025-11-27 11:05:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:05:07] 
[2025-11-27 11:05:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:05:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:05:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:05:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:05:07] 
[2025-11-27 11:05:07] 2025-11-27 16:04:34,772 | INFO     | ***************************************
[2025-11-27 11:05:07] 2025-11-27 16:04:35,276 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 11:05:07] 2025-11-27 16:04:35,364 | INFO     | sufficient remaining disk space (69589794816 B)
[2025-11-27 11:05:07] 2025-11-27 16:04:35,364 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:05:07] 2025-11-27 16:04:35,364 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:05:07] 2025-11-27 16:04:35,364 | INFO     | update_server=False
[2025-11-27 11:05:07] 2025-11-27 16:04:35,365 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:05:07] 2025-11-27 16:04:35,365 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:05:07] 2025-11-27 16:04:35,365 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:05:07] 2025-11-27 16:04:35,365 | INFO     | aborting loop
[2025-11-27 11:05:07] 2025-11-27 16:04:35,365 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:05:07] 2025-11-27 16:04:35,392 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:05:07] 2025-11-27 16:04:36,371 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:05:07] 2025-11-27 16:04:36,371 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:05:07] 2025-11-27 16:04:36,399 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:05:07] 2025-11-27 16:04:36,404 | INFO     | all data control threads have been joined
[2025-11-27 11:05:07] 2025-11-27 16:04:36,405 | INFO     | all job control threads have been joined
[2025-11-27 11:05:07] 2025-11-27 16:04:36,459 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:05:07] 2025-11-27 16:04:36,631 | INFO     | all payload control threads have been joined
[2025-11-27 11:05:07] 2025-11-27 16:04:36,687 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:05:07] 2025-11-27 16:04:36,811 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:05:07] 2025-11-27 16:04:37,046 | INFO     | [job] validate thread has finished
[2025-11-27 11:05:07] 2025-11-27 16:04:37,121 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:05:07] 2025-11-27 16:04:37,180 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:05:07] 2025-11-27 16:04:37,372 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:05:07] 2025-11-27 16:04:37,410 | INFO     | [data] control thread has finished
[2025-11-27 11:05:07] 2025-11-27 16:04:37,411 | INFO     | [job] control thread has finished
[2025-11-27 11:05:07] 2025-11-27 16:04:37,428 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:05:07] 2025-11-27 16:04:37,637 | INFO     | [payload] control thread has finished
[2025-11-27 11:05:07] 2025-11-27 16:04:37,811 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:05:07] 2025-11-27 16:04:39,373 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:05:07] 2025-11-27 16:04:43,600 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:05:07] 2025-11-27 16:04:44,229 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140512966985536)>', '<ExcThread(monitor, started 140512178718464)>']
[2025-11-27 11:05:07] 2025-11-27 16:04:49,255 | INFO     | all workflow threads have been joined
[2025-11-27 11:05:07] 2025-11-27 16:04:49,256 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:05:07] 2025-11-27 16:04:49,256 | INFO     | traces error code: 0
[2025-11-27 11:05:07] 2025-11-27 16:04:49,256 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:05:07] 2025-11-27 16:05:06,314 | INFO     | PID=3496017 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:05:07] 2025-11-27 16:05:06,314 | INFO     | .. there are 66 such processes running
[2025-11-27 11:05:07] 2025-11-27 16:05:06,319 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:05:07] 2025-11-27 16:05:06,319 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:05:07] 2025-11-27 16:05:06,319 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:05:07] 2025-11-27 16:05:06,319 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:05:07] 2025-11-27 16:05:06,319 | INFO     | [monitor] control thread has ended
[2025-11-27 11:05:07] 2025-11-27 16:05:06,903 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:05:07] 2025-11-27 16:05:06,929 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:05:07] 2025-11-27 16:05:06,984 [wrapper] pilotpid: 3496017
[2025-11-27 11:05:07] 2025-11-27 16:05:06,996 [wrapper] Pilot exit status: 0
[2025-11-27 11:05:07] 2025-11-27 16:05:07,024 [wrapper] pandaids: 6898120494
[2025-11-27 11:05:07] 2025-11-27 16:05:07,187 [wrapper] cleanup supervisor_pilot 3395528 3496018
[2025-11-27 11:05:07] 2025-11-27 16:05:07,196 [wrapper] Test setup, not cleaning
[2025-11-27 11:05:07] 2025-11-27 16:05:07,201 [wrapper] apfmon messages muted
[2025-11-27 11:05:07] 2025-11-27 16:05:07,204 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:05:07] 2025-11-27 16:05:07,207 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:05:07]  *** Error codes and diagnostics ***
[2025-11-27 11:05:07]     "exeErrorCode": 0,
[2025-11-27 11:05:07]     "exeErrorDiag": "",
[2025-11-27 11:05:07]     "pilotErrorCode": 0,
[2025-11-27 11:05:07]     "pilotErrorDiag": "",
[2025-11-27 11:05:07]  *** Listing of results directory ***
[2025-11-27 11:05:07] total 1311152
[2025-11-27 11:05:07] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 21:38 pilot3.tar.gz
[2025-11-27 11:05:07] -rwx------. 1 boincer umatlas     36292 Nov 25 22:33 runpilot2-wrapper.sh
[2025-11-27 11:05:07] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:33 queuedata.json
[2025-11-27 11:05:07] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:05:07] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:00 run_atlas
[2025-11-27 11:05:07] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:00 job.xml
[2025-11-27 11:05:07] -rw-r--r--. 2 boincer umatlas 408333307 Nov 27 00:00 EVNT.47483658._002431.pool.root.1
[2025-11-27 11:05:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:00 start_atlas.sh
[2025-11-27 11:05:07] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:00 shared
[2025-11-27 11:05:07] -rw-r--r--. 2 boincer umatlas    590101 Nov 27 00:00 input.tar.gz
[2025-11-27 11:05:07] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:00 boinc_lockfile
[2025-11-27 11:05:07] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:00 pandaJob.out
[2025-11-27 11:05:07] -rw-------. 1 boincer umatlas        57 Nov 27 00:00 setup.sh.local
[2025-11-27 11:05:07] -rw-------. 1 boincer umatlas    991570 Nov 27 00:00 agis_schedconf.cvmfs.json
[2025-11-27 11:05:07] drwx------. 5 boincer umatlas      4096 Nov 27 00:00 pilot3
[2025-11-27 11:05:07] -rw-r--r--. 1 boincer umatlas       532 Nov 27 10:47 boinc_task_state.xml
[2025-11-27 11:05:07] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 11:00 init_data.xml
[2025-11-27 11:05:07] -rw-------. 1 boincer umatlas 916193787 Nov 27 11:03 HITS.47556161._004138.pool.root.1
[2025-11-27 11:05:07] -rw-------. 1 boincer umatlas      1049 Nov 27 11:04 memory_monitor_summary.json
[2025-11-27 11:05:07] -rw-------. 1 boincer umatlas   1516240 Nov 27 11:04 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:05:07] -rw-------. 1 boincer umatlas   2295504 Nov 27 11:04 log.47556161._004138.job.log.tgz.1
[2025-11-27 11:05:07] -rw-------. 1 boincer umatlas      8583 Nov 27 11:04 heartbeat.json
[2025-11-27 11:05:07] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:05 boinc_mmap_file
[2025-11-27 11:05:07] -rw-r--r--. 1 boincer umatlas        29 Nov 27 11:05 wrapper_checkpoint.txt
[2025-11-27 11:05:07] -rw-------. 1 boincer umatlas        95 Nov 27 11:05 pilot_heartbeat.json
[2025-11-27 11:05:07] -rw-------. 1 boincer umatlas       823 Nov 27 11:05 pilotlog.txt
[2025-11-27 11:05:07] -rw-------. 1 boincer umatlas   4791271 Nov 27 11:05 log.47556161._004138.job.log.1
[2025-11-27 11:05:07] -rw-------. 1 boincer umatlas       353 Nov 27 11:05 output.list
[2025-11-27 11:05:07] -rw-r--r--. 1 boincer umatlas       620 Nov 27 11:05 runtime_log
[2025-11-27 11:05:07] -rw-------. 1 boincer umatlas   7106560 Nov 27 11:05 result.tar.gz
[2025-11-27 11:05:07] -rw-r--r--. 1 boincer umatlas      9340 Nov 27 11:05 runtime_log.err
[2025-11-27 11:05:07] -rw-------. 1 boincer umatlas       659 Nov 27 11:05 NjCODmlSLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMpMKDmPpXVVo.diag
[2025-11-27 11:05:07] -rw-r--r--. 1 boincer umatlas     21336 Nov 27 11:05 stderr.txt
[2025-11-27 11:05:07] HITS file was successfully produced:
[2025-11-27 11:05:07] -rw-------. 1 boincer umatlas 916193787 Nov 27 11:03 shared/HITS.pool.root.1
[2025-11-27 11:05:07]  *** Contents of shared directory: ***
[2025-11-27 11:05:07] total 1301032
[2025-11-27 11:05:07] -rw-r--r--. 2 boincer umatlas 408333307 Nov 27 00:00 ATLAS.root_0
[2025-11-27 11:05:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:00 start_atlas.sh
[2025-11-27 11:05:07] -rw-r--r--. 2 boincer umatlas    590101 Nov 27 00:00 input.tar.gz
[2025-11-27 11:05:07] -rw-------. 1 boincer umatlas 916193787 Nov 27 11:03 HITS.pool.root.1
[2025-11-27 11:05:07] -rw-------. 1 boincer umatlas   7106560 Nov 27 11:05 result.tar.gz
11:05:09 (3490429): run_atlas exited; CPU time 200252.082440
11:05:09 (3490429): called boinc_finish(0)

</stderr_txt>
]]>

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