Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:59 (1908085): wrapper (7.7.26015): starting
00:01:59 (1908085): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:01:59] Arguments: --nthreads 12
[2025-11-27 00:01:59] Threads: 12
[2025-11-27 00:01:59] Checking for CVMFS
[2025-11-27 00:02:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:02:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:02:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:02:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:02:02] 2.13.2.0 11163 38298 284840 153347 0 302 32340404 40960000 12118 16776704 0 36832237 99.628 32788770 36919 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:02:02] CVMFS is ok
[2025-11-27 00:02:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:02:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:02:02] Further information can be found at the LHC@home message board.
[2025-11-27 00:02:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:02:02] Checking for apptainer binary...
[2025-11-27 00:02:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:02:02] Running /usr/bin/apptainer --version
[2025-11-27 00:02:03] apptainer version 1.4.4-1.el9
[2025-11-27 00:02:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:02:04] c-210-35-1.aglt2.org
[2025-11-27 00:02:04] apptainer works
[2025-11-27 00:02:04] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:02:04] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:02:04] Starting ATLAS job with PandaID=6897139425
[2025-11-27 00:02:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 04:50:05]  *** The last 200 lines of the pilot log: ***
[2025-11-28 04:50:05] 2025-11-28 09:49:07,980 | INFO     | time since job start (103523s) is within the limit (172800.0s)
[2025-11-28 04:50:05] 2025-11-28 09:49:09,724 | INFO     | monitor loop #5877: job 0:6897139425 is in state 'finished'
[2025-11-28 04:50:05] 2025-11-28 09:49:09,724 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:50:05] 2025-11-28 09:49:09,988 | INFO     | time since job start (103525s) is within the limit (172800.0s)
[2025-11-28 04:50:05] 2025-11-28 09:49:11,995 | INFO     | time since job start (103527s) is within the limit (172800.0s)
[2025-11-28 04:50:05] 2025-11-28 09:49:12,229 | INFO     | monitor loop #5878: job 0:6897139425 is in state 'finished'
[2025-11-28 04:50:05] 2025-11-28 09:49:12,229 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:50:05] 2025-11-28 09:49:14,002 | INFO     | time since job start (103530s) is within the limit (172800.0s)
[2025-11-28 04:50:05] 2025-11-28 09:49:14,752 | INFO     | monitor loop #5879: job 0:6897139425 is in state 'finished'
[2025-11-28 04:50:05] 2025-11-28 09:49:14,752 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:50:05] 2025-11-28 09:49:16,008 | INFO     | time since job start (103532s) is within the limit (172800.0s)
[2025-11-28 04:50:05] 2025-11-28 09:49:17,149 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 04:50:05] 2025-11-28 09:49:17,179 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2815.028410714286
[2025-11-28 04:50:05] 2025-11-28 09:49:17,238 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897139425/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 04:50:05] 2025-11-28 09:49:17,239 | INFO     | extracted standard info from prmon json
[2025-11-28 04:50:05] 2025-11-28 09:49:17,239 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 04:50:05] 2025-11-28 09:49:17,239 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 04:50:05] 2025-11-28 09:49:17,287 | INFO     | monitor loop #5880: job 0:6897139425 is in state 'finished'
[2025-11-28 04:50:05] 2025-11-28 09:49:17,287 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:50:05] 2025-11-28 09:49:17,345 | INFO     | fitting pss+swap vs Time
[2025-11-28 04:50:05] 2025-11-28 09:49:17,356 | INFO     | sum of square deviations: 1507506991705.1304
[2025-11-28 04:50:05] 2025-11-28 09:49:17,496 | INFO     | sum of deviations: 12752389446207.605
[2025-11-28 04:50:05] 2025-11-28 09:49:17,496 | INFO     | mean x: 1764271659.7709563
[2025-11-28 04:50:05] 2025-11-28 09:49:17,496 | INFO     | mean y: 3530800.76446281
[2025-11-28 04:50:05] 2025-11-28 09:49:17,497 | INFO     | intersect: -14920897024.845966
[2025-11-28 04:50:05] 2025-11-28 09:49:17,503 | INFO     | chi2: 30.543317249601998
[2025-11-28 04:50:05] 2025-11-28 09:49:17,510 | INFO     | sum of square deviations: 1494205811959.432
[2025-11-28 04:50:05] 2025-11-28 09:49:17,647 | INFO     | sum of deviations: 13574668853387.068
[2025-11-28 04:50:05] 2025-11-28 09:49:17,647 | INFO     | mean x: 1764271507.3102427
[2025-11-28 04:50:05] 2025-11-28 09:49:17,647 | INFO     | mean y: 3540224.975133215
[2025-11-28 04:50:05] 2025-11-28 09:49:17,648 | INFO     | intersect: -16024640958.309433
[2025-11-28 04:50:05] 2025-11-28 09:49:17,654 | INFO     | chi2: 26.211594606706328
[2025-11-28 04:50:05] 2025-11-28 09:49:17,654 | INFO     | current chi2=26.211594606706328 (change=14.182227187363269 %)
[2025-11-28 04:50:05] 2025-11-28 09:49:17,655 | INFO     | right removable region: 1688
[2025-11-28 04:50:05] 2025-11-28 09:49:17,659 | INFO     | sum of square deviations: 1494192098549.4333
[2025-11-28 04:50:05] 2025-11-28 09:49:17,793 | INFO     | sum of deviations: 11889915086225.996
[2025-11-28 04:50:05] 2025-11-28 09:49:17,794 | INFO     | mean x: 1764271812.3102427
[2025-11-28 04:50:05] 2025-11-28 09:49:17,794 | INFO     | mean y: 3540680.7690941384
[2025-11-28 04:50:05] 2025-11-28 09:49:17,794 | INFO     | intersect: -14035512301.612097
[2025-11-28 04:50:05] 2025-11-28 09:49:17,800 | INFO     | chi2: 26.0294698476318
[2025-11-28 04:50:05] 2025-11-28 09:49:17,801 | INFO     | current chi2=26.0294698476318 (change=14.778510680692413 %)
[2025-11-28 04:50:05] 2025-11-28 09:49:17,801 | INFO     | left removable region: 10
[2025-11-28 04:50:05] 2025-11-28 09:49:17,803 | INFO     | sum of square deviations: 1465192094635.1619
[2025-11-28 04:50:05] 2025-11-28 09:49:17,916 | INFO     | sum of deviations: 12089669855024.143
[2025-11-28 04:50:05] 2025-11-28 09:49:17,917 | INFO     | mean x: 1764271781.8969011
[2025-11-28 04:50:05] 2025-11-28 09:49:17,921 | INFO     | mean y: 3560556.336114422
[2025-11-28 04:50:05] 2025-11-28 09:49:17,921 | INFO     | intersect: -14553891299.81781
[2025-11-28 04:50:05] 2025-11-28 09:49:17,923 | INFO     | chi2: 17.688885831785015
[2025-11-28 04:50:05] 2025-11-28 09:49:17,923 | INFO     | current memory leak: 8.25 B/s (using 1678 data points, chi2=17.69)
[2025-11-28 04:50:05] 2025-11-28 09:49:17,929 | INFO     | could have reported an average CPU frequency of 2695 MHz (59 samples)
[2025-11-28 04:50:05] 2025-11-28 09:49:17,929 | INFO     | ..............................
[2025-11-28 04:50:05] 2025-11-28 09:49:17,929 | INFO     | . Timing measurements:
[2025-11-28 04:50:05] 2025-11-28 09:49:17,929 | INFO     | . get job = 0 s
[2025-11-28 04:50:05] 2025-11-28 09:49:17,929 | INFO     | . initial setup = 7 s
[2025-11-28 04:50:05] 2025-11-28 09:49:17,929 | INFO     | . payload setup = 64 s
[2025-11-28 04:50:05] 2025-11-28 09:49:17,929 | INFO     | . stage-in = 1 s
[2025-11-28 04:50:05] 2025-11-28 09:49:17,929 | INFO     | . payload execution = 103333 s
[2025-11-28 04:50:05] 2025-11-28 09:49:17,929 | INFO     | . stage-out = 11 s
[2025-11-28 04:50:05] 2025-11-28 09:49:17,929 | INFO     | . log creation = 1 s
[2025-11-28 04:50:05] 2025-11-28 09:49:17,929 | INFO     | ..............................
[2025-11-28 04:50:05] 2025-11-28 09:49:18,044 | INFO     | time since job start (103534s) is within the limit (172800.0s)
[2025-11-28 04:50:05] 2025-11-28 09:49:18,489 | INFO     | 
[2025-11-28 04:50:05] 2025-11-28 09:49:18,489 | INFO     | job summary report
[2025-11-28 04:50:05] 2025-11-28 09:49:18,489 | INFO     | --------------------------------------------------
[2025-11-28 04:50:05] 2025-11-28 09:49:18,489 | INFO     | PanDA job id: 6897139425
[2025-11-28 04:50:05] 2025-11-28 09:49:18,489 | INFO     | task id: 47556161
[2025-11-28 04:50:05] 2025-11-28 09:49:18,489 | INFO     | errors: (none)
[2025-11-28 04:50:05] 2025-11-28 09:49:18,489 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 04:50:05] 2025-11-28 09:49:18,489 | INFO     | pilot state: finished 
[2025-11-28 04:50:05] 2025-11-28 09:49:18,489 | INFO     | transexitcode: 0
[2025-11-28 04:50:05] 2025-11-28 09:49:18,489 | INFO     | exeerrorcode: 0
[2025-11-28 04:50:05] 2025-11-28 09:49:18,489 | INFO     | exeerrordiag: 
[2025-11-28 04:50:05] 2025-11-28 09:49:18,489 | INFO     | exitcode: 0
[2025-11-28 04:50:05] 2025-11-28 09:49:18,490 | INFO     | exitmsg: OK
[2025-11-28 04:50:05] 2025-11-28 09:49:18,490 | INFO     | cpuconsumptiontime: 250934 s
[2025-11-28 04:50:05] 2025-11-28 09:49:18,490 | INFO     | nevents: 1000
[2025-11-28 04:50:05] 2025-11-28 09:49:18,490 | INFO     | neventsw: 0
[2025-11-28 04:50:05] 2025-11-28 09:49:18,490 | INFO     | pid: 1925000
[2025-11-28 04:50:05] 2025-11-28 09:49:18,490 | INFO     | pgrp: 1925000
[2025-11-28 04:50:05] 2025-11-28 09:49:18,490 | INFO     | corecount: 12
[2025-11-28 04:50:05] 2025-11-28 09:49:18,490 | INFO     | event service: False
[2025-11-28 04:50:05] 2025-11-28 09:49:18,490 | INFO     | sizes: {0: 2283437, 1: 2284038, 2: 2284122, 3: 2284178, 4: 2284349, 5: 2284377, 16: 2284561, 28: 2284589, 39: 2284617, 45: 2284907, 52: 2284935, 103402: 2358064, 1
[2025-11-28 04:50:05] 2025-11-28 09:49:18,490 | INFO     | --------------------------------------------------
[2025-11-28 04:50:05] 2025-11-28 09:49:18,490 | INFO     | 
[2025-11-28 04:50:05] 2025-11-28 09:49:18,490 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-28 04:50:05] 2025-11-28 09:49:18,550 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,550 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,550 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,550 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,551 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,551 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,551 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,551 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,551 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,551 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,551 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,551 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,551 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,551 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,551 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,551 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,551 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,551 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 04:50:05] 2025-11-28 09:49:18,551 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,551 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 04:50:05] 2025-11-28 09:49:18,552 | INFO     | job 6897139425 has completed (purged errors)
[2025-11-28 04:50:05] 2025-11-28 09:49:18,552 | INFO     | overall cleanup function is called
[2025-11-28 04:50:05] 2025-11-28 09:49:19,583 | INFO     | --- collectZombieJob: --- 10, [1925000]
[2025-11-28 04:50:05] 2025-11-28 09:49:19,583 | INFO     | zombie collector waiting for pid 1925000
[2025-11-28 04:50:05] 2025-11-28 09:49:19,583 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 04:50:05] 2025-11-28 09:49:19,583 | INFO     | collected zombie processes
[2025-11-28 04:50:05] 2025-11-28 09:49:19,583 | INFO     | will attempt to kill all subprocesses of pid=1925000
[2025-11-28 04:50:05] 2025-11-28 09:49:20,866 | INFO     | process IDs to be killed: [1925000] (in reverse order)
[2025-11-28 04:50:05] 2025-11-28 09:49:21,168 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 04:50:05] 2025-11-28 09:49:21,169 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 04:50:05] 2025-11-28 09:49:21,184 | INFO     | did not find any defunct processes belonging to 1925000
[2025-11-28 04:50:05] 2025-11-28 09:49:21,196 | INFO     | did not find any defunct processes belonging to 1925000
[2025-11-28 04:50:05] 2025-11-28 09:49:21,197 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 04:50:05] 2025-11-28 09:49:21,197 | INFO     | ready for new job
[2025-11-28 04:50:05] 2025-11-28 09:49:21,198 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 04:50:05] 2025-11-28 09:49:21,205 | INFO     | ***************************************
[2025-11-28 04:50:05] 2025-11-28 09:49:21,205 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 04:50:05] 2025-11-28 09:49:21,205 | INFO     | ***************************************
[2025-11-28 04:50:05] 2025-11-28 09:49:21,205 | INFO     | 
[2025-11-28 04:50:05] 2025-11-28 09:49:21,208 | INFO     | architecture information:
[2025-11-28 04:50:05] 2025-11-28 09:49:21,209 | INFO     | executing command: cat /etc/os-release
[2025-11-28 04:50:05] 2025-11-28 09:49:21,262 | INFO     | cat /etc/os-release:
[2025-11-28 04:50:05] NAME="CentOS Linux"
[2025-11-28 04:50:05] VERSION="7 (Core)"
[2025-11-28 04:50:05] ID="centos"
[2025-11-28 04:50:05] ID_LIKE="rhel fedora"
[2025-11-28 04:50:05] VERSION_ID="7"
[2025-11-28 04:50:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 04:50:05] ANSI_COLOR="0;31"
[2025-11-28 04:50:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 04:50:05] HOME_URL="https://www.centos.org/"
[2025-11-28 04:50:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 04:50:05] 
[2025-11-28 04:50:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 04:50:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 04:50:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 04:50:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 04:50:05] 
[2025-11-28 04:50:05] 2025-11-28 09:49:21,263 | INFO     | ***************************************
[2025-11-28 04:50:05] 2025-11-28 09:49:21,776 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-28 04:50:05] 2025-11-28 09:49:21,859 | INFO     | sufficient remaining disk space (68497178624 B)
[2025-11-28 04:50:05] 2025-11-28 09:49:21,859 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 04:50:05] 2025-11-28 09:49:21,860 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 04:50:05] 2025-11-28 09:49:21,860 | INFO     | update_server=False
[2025-11-28 04:50:05] 2025-11-28 09:49:21,860 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 04:50:05] 2025-11-28 09:49:21,966 | INFO     | all data control threads have been joined
[2025-11-28 04:50:05] 2025-11-28 09:49:21,990 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 04:50:05] 2025-11-28 09:49:22,127 | INFO     | all payload control threads have been joined
[2025-11-28 04:50:05] 2025-11-28 09:49:22,319 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 04:50:05] 2025-11-28 09:49:22,319 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 04:50:05] 2025-11-28 09:49:22,319 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 04:50:05] 2025-11-28 09:49:22,319 | INFO     | will abort loop
[2025-11-28 04:50:05] 2025-11-28 09:49:22,337 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 04:50:05] 2025-11-28 09:49:22,865 | INFO     | [job] retrieve thread has finished
[2025-11-28 04:50:05] 2025-11-28 09:49:22,980 | INFO     | [data] control thread has finished
[2025-11-28 04:50:05] 2025-11-28 09:49:23,040 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 04:50:05] 2025-11-28 09:49:23,133 | INFO     | [payload] control thread has finished
[2025-11-28 04:50:05] 2025-11-28 09:49:23,325 | INFO     | [job] job monitor thread has finished
[2025-11-28 04:50:05] 2025-11-28 09:49:23,343 | INFO     | [payload] failed_post thread has finished
[2025-11-28 04:50:05] 2025-11-28 09:49:23,349 | INFO     | [payload] validate_post thread has finished
[2025-11-28 04:50:05] 2025-11-28 09:49:23,374 | INFO     | all job control threads have been joined
[2025-11-28 04:50:05] 2025-11-28 09:49:23,451 | INFO     | [data] copytool_in thread has finished
[2025-11-28 04:50:05] 2025-11-28 09:49:23,451 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 04:50:05] 2025-11-28 09:49:23,825 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 04:50:05] 2025-11-28 09:49:24,046 | INFO     | [job] queue monitor thread has finished
[2025-11-28 04:50:05] 2025-11-28 09:49:24,253 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 04:50:05] 2025-11-28 09:49:24,344 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 04:50:05] 2025-11-28 09:49:24,344 | INFO     | [job] validate thread has finished
[2025-11-28 04:50:05] 2025-11-28 09:49:24,354 | INFO     | [data] copytool_out thread has finished
[2025-11-28 04:50:05] 2025-11-28 09:49:24,382 | INFO     | [job] control thread has finished
[2025-11-28 04:50:05] 2025-11-28 09:49:25,999 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 04:50:05] 2025-11-28 09:49:50,143 | INFO     | 103543s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-28 04:50:05] 2025-11-28 09:49:51,660 | INFO     | PID=1915968 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 04:50:05] 2025-11-28 09:49:51,660 | INFO     | .. there are 12 such processes running
[2025-11-28 04:50:05] 2025-11-28 09:49:51,660 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 04:50:05] 2025-11-28 09:49:51,660 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 04:50:05] 2025-11-28 09:49:51,660 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 04:50:05] 2025-11-28 09:49:58,326 | INFO     | [monitor] cgroup control has ended
[2025-11-28 04:50:05] 2025-11-28 09:49:58,673 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140091469023040)>', '<ExcThread(monitor, started 140090743445248)>']
[2025-11-28 04:50:05] 2025-11-28 09:49:58,698 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 04:50:05] 2025-11-28 09:49:58,699 | INFO     | [monitor] control thread has ended
[2025-11-28 04:50:05] 2025-11-28 09:50:03,699 | INFO     | all workflow threads have been joined
[2025-11-28 04:50:05] 2025-11-28 09:50:03,699 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 04:50:05] 2025-11-28 09:50:03,699 | INFO     | traces error code: 0
[2025-11-28 04:50:05] 2025-11-28 09:50:03,699 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 04:50:05] 2025-11-28 09:50:04,235 [wrapper] ==== pilot stdout END ====
[2025-11-28 04:50:05] 2025-11-28 09:50:04,259 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 04:50:05] 2025-11-28 09:50:04,284 [wrapper] pilotpid: 1915968
[2025-11-28 04:50:05] 2025-11-28 09:50:04,309 [wrapper] Pilot exit status: 0
[2025-11-28 04:50:05] 2025-11-28 09:50:04,400 [wrapper] pandaids: 6897139425
[2025-11-28 04:50:05] 2025-11-28 09:50:04,591 [wrapper] cleanup supervisor_pilot  471649 1915969
[2025-11-28 04:50:05] 2025-11-28 09:50:04,605 [wrapper] Test setup, not cleaning
[2025-11-28 04:50:05] 2025-11-28 09:50:04,626 [wrapper] apfmon messages muted
[2025-11-28 04:50:05] 2025-11-28 09:50:04,643 [wrapper] ==== wrapper stdout END ====
[2025-11-28 04:50:05] 2025-11-28 09:50:04,666 [wrapper] ==== wrapper stderr END ====
[2025-11-28 04:50:05]  *** Error codes and diagnostics ***
[2025-11-28 04:50:05]     "exeErrorCode": 0,
[2025-11-28 04:50:05]     "exeErrorDiag": "",
[2025-11-28 04:50:05]     "pilotErrorCode": 0,
[2025-11-28 04:50:05]     "pilotErrorDiag": "",
[2025-11-28 04:50:05]  *** Listing of results directory ***
[2025-11-28 04:50:05] total 1317004
[2025-11-28 04:50:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-28 04:50:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-28 04:50:05] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-28 04:50:05] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 04:50:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:01 run_atlas
[2025-11-28 04:50:05] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:01 job.xml
[2025-11-28 04:50:05] -rw-r--r--. 2 boincer umatlas 410399873 Nov 27 00:01 EVNT.47483658._002178.pool.root.1
[2025-11-28 04:50:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-28 04:50:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:01 shared
[2025-11-28 04:50:05] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:01 input.tar.gz
[2025-11-28 04:50:05] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:01 boinc_lockfile
[2025-11-28 04:50:05] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 00:02 pandaJob.out
[2025-11-28 04:50:05] -rw-------. 1 boincer umatlas        57 Nov 27 00:02 setup.sh.local
[2025-11-28 04:50:05] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-28 04:50:05] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-28 04:50:05] -rw-r--r--. 1 boincer umatlas       533 Nov 28 04:27 boinc_task_state.xml
[2025-11-28 04:50:05] -rw-------. 1 boincer umatlas 902844604 Nov 28 04:44 HITS.47556161._001612.pool.root.1
[2025-11-28 04:50:05] -rw-------. 1 boincer umatlas      1059 Nov 28 04:48 memory_monitor_summary.json
[2025-11-28 04:50:05] -rw-------. 1 boincer umatlas   1516240 Nov 28 04:48 agis_ddmendpoints.agis.ALL.json
[2025-11-28 04:50:05] -rw-------. 1 boincer umatlas   3065108 Nov 28 04:48 log.47556161._001612.job.log.tgz.1
[2025-11-28 04:50:05] -rw-------. 1 boincer umatlas        95 Nov 28 04:49 pilot_heartbeat.json
[2025-11-28 04:50:05] -rw-r--r--. 1 boincer umatlas      6843 Nov 28 04:49 init_data.xml
[2025-11-28 04:50:05] -rw-------. 1 boincer umatlas      8643 Nov 28 04:49 heartbeat.json
[2025-11-28 04:50:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 04:50 boinc_mmap_file
[2025-11-28 04:50:05] -rw-r--r--. 1 boincer umatlas        29 Nov 28 04:50 wrapper_checkpoint.txt
[2025-11-28 04:50:05] -rw-------. 1 boincer umatlas      5127 Nov 28 04:50 pilotlog.txt
[2025-11-28 04:50:05] -rw-------. 1 boincer umatlas  12657656 Nov 28 04:50 log.47556161._001612.job.log.1
[2025-11-28 04:50:05] -rw-------. 1 boincer umatlas       353 Nov 28 04:50 output.list
[2025-11-28 04:50:05] -rw-r--r--. 1 boincer umatlas       620 Nov 28 04:50 runtime_log
[2025-11-28 04:50:05] -rw-------. 1 boincer umatlas  15738880 Nov 28 04:50 result.tar.gz
[2025-11-28 04:50:05] -rw-r--r--. 1 boincer umatlas      9356 Nov 28 04:50 runtime_log.err
[2025-11-28 04:50:05] -rw-------. 1 boincer umatlas       665 Nov 28 04:50 fk2KDmUWBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnTMKDmvk045n.diag
[2025-11-28 04:50:05] -rw-r--r--. 1 boincer umatlas     21827 Nov 28 04:50 stderr.txt
[2025-11-28 04:50:05] HITS file was successfully produced:
[2025-11-28 04:50:05] -rw-------. 1 boincer umatlas 902844604 Nov 28 04:44 shared/HITS.pool.root.1
[2025-11-28 04:50:05]  *** Contents of shared directory: ***
[2025-11-28 04:50:05] total 1298444
[2025-11-28 04:50:05] -rw-r--r--. 2 boincer umatlas 410399873 Nov 27 00:01 ATLAS.root_0
[2025-11-28 04:50:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-28 04:50:05] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:01 input.tar.gz
[2025-11-28 04:50:05] -rw-------. 1 boincer umatlas 902844604 Nov 28 04:44 HITS.pool.root.1
[2025-11-28 04:50:05] -rw-------. 1 boincer umatlas  15738880 Nov 28 04:50 result.tar.gz
04:50:07 (1908085): run_atlas exited; CPU time 251772.845476
04:50:07 (1908085): called boinc_finish(0)

</stderr_txt>
]]>

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