Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:33:42 (2231561): wrapper (7.7.26015): starting
04:33:42 (2231561): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 04:33:42] Arguments: --nthreads 3
[2025-11-27 04:33:42] Threads: 3
[2025-11-27 04:33:42] Checking for CVMFS
[2025-11-27 04:33:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 04:33:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 04:33:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 04:33:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 04:33:42] 2.9.2.0 2210343 4 47412 153345 3 88 35817938 36864001 0 130560 0 62606 100.000 1 7 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 04:33:42] CVMFS is ok
[2025-11-27 04:33:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 04:33:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 04:33:42] Further information can be found at the LHC@home message board.
[2025-11-27 04:33:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 04:33:42] Checking for apptainer binary...
[2025-11-27 04:33:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 04:33:42] Running /usr/bin/apptainer --version
[2025-11-27 04:33:42] apptainer version 1.4.1-1.1
[2025-11-27 04:33:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 04:33:43] thA335
[2025-11-27 04:33:43] apptainer works
[2025-11-27 04:33:43] Set ATHENA_PROC_NUMBER=3
[2025-11-27 04:33:43] Set ATHENA_CORE_NUMBER=3
[2025-11-27 04:33:43] Starting ATLAS job with PandaID=6898039654
[2025-11-27 04:33:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 04:38:01]  *** The last 200 lines of the pilot log: ***
[2025-11-27 04:38:01] 2025-11-27 03:37:09,576 | INFO     | update_server=False
[2025-11-27 04:38:01] 2025-11-27 03:37:09,576 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 04:38:01] 2025-11-27 03:37:09,576 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 04:38:01] 2025-11-27 03:37:09,615 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 04:38:01] 2025-11-27 03:37:09,762 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 04:38:01] 2025-11-27 03:37:09,762 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 04:38:01] 2025-11-27 03:37:09,762 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 04:38:01] 2025-11-27 03:37:09,763 | INFO     | will abort loop
[2025-11-27 04:38:01] 2025-11-27 03:37:09,992 | INFO     | all data control threads have been joined
[2025-11-27 04:38:01] 2025-11-27 03:37:10,328 | INFO     | all payload control threads have been joined
[2025-11-27 04:38:01] 2025-11-27 03:37:10,582 | INFO     | [job] queue monitor thread has finished
[2025-11-27 04:38:01] 2025-11-27 03:37:10,583 | INFO     | [job] retrieve thread has finished
[2025-11-27 04:38:01] 2025-11-27 03:37:10,769 | INFO     | [job] job monitor thread has finished
[2025-11-27 04:38:01] 2025-11-27 03:37:10,883 | INFO     | all job control threads have been joined
[2025-11-27 04:38:01] 2025-11-27 03:37:10,935 | INFO     | [payload] validate_post thread has finished
[2025-11-27 04:38:01] 2025-11-27 03:37:10,994 | INFO     | [data] control thread has finished
[2025-11-27 04:38:01] 2025-11-27 03:37:11,027 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 04:38:01] 2025-11-27 03:37:11,064 | INFO     | [data] copytool_in thread has finished
[2025-11-27 04:38:01] 2025-11-27 03:37:11,150 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 04:38:01] 2025-11-27 03:37:11,286 | INFO     | [job] validate thread has finished
[2025-11-27 04:38:01] 2025-11-27 03:37:11,335 | INFO     | [payload] control thread has finished
[2025-11-27 04:38:01] 2025-11-27 03:37:11,372 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 04:38:01] 2025-11-27 03:37:11,419 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 04:38:01] 2025-11-27 03:37:11,500 | INFO     | [payload] failed_post thread has finished
[2025-11-27 04:38:01] 2025-11-27 03:37:11,621 | INFO     | [data] copytool_out thread has finished
[2025-11-27 04:38:01] 2025-11-27 03:37:11,889 | INFO     | [job] control thread has finished
[2025-11-27 04:38:01] 2025-11-27 03:37:11,978 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 04:38:01] 2025-11-27 03:37:15,986 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 04:38:01] 2025-11-27 03:37:39,455 | INFO     | PID=2235296 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 04:38:01] 2025-11-27 03:37:39,455 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 04:38:01] 2025-11-27 03:37:39,455 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 04:38:01] 2025-11-27 03:37:39,455 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 04:38:01] 2025-11-27 03:37:54,583 | INFO     | [monitor] cgroup control has ended
[2025-11-27 04:38:01] 2025-11-27 03:37:55,846 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140388877068096)>', '<ExcThread(monitor, started 140388086036224)>']
[2025-11-27 04:38:01] 2025-11-27 03:37:56,546 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 04:38:01] 2025-11-27 03:37:56,546 | INFO     | [monitor] control thread has ended
[2025-11-27 04:38:01] 2025-11-27 03:38:00,872 | INFO     | all workflow threads have been joined
[2025-11-27 04:38:01] 2025-11-27 03:38:00,872 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 04:38:01] 2025-11-27 03:38:00,873 | INFO     | traces error code: 0
[2025-11-27 04:38:01] 2025-11-27 03:38:00,873 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 04:38:01] 2025-11-27 03:38:00,953 [wrapper] ==== pilot stdout END ====
[2025-11-27 04:38:01] 2025-11-27 03:38:00,956 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 04:38:01] 2025-11-27 03:38:00,959 [wrapper] pilotpid: 2235296
[2025-11-27 04:38:01] 2025-11-27 03:38:00,962 [wrapper] Pilot exit status: 0
[2025-11-27 04:38:01] 2025-11-27 03:38:00,970 [wrapper] pandaids: 6898039654
[2025-11-27 04:38:01] 2025-11-27 03:38:00,987 [wrapper] cleanup supervisor_pilot 2235302 2235297
[2025-11-27 04:38:01] 2025-11-27 03:38:00,989 [wrapper] Test setup, not cleaning
[2025-11-27 04:38:01] 2025-11-27 03:38:00,992 [wrapper] apfmon messages muted
[2025-11-27 04:38:01] 2025-11-27 03:38:00,994 [wrapper] ==== wrapper stdout END ====
[2025-11-27 04:38:01] 2025-11-27 03:38:00,997 [wrapper] ==== wrapper stderr END ====
[2025-11-27 04:38:01]  *** Error codes and diagnostics ***
[2025-11-27 04:38:01]     "exeErrorCode": 65,
[2025-11-27 04:38:01]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 04:38:01]     "pilotErrorCode": 1305,
[2025-11-27 04:38:01]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 04:38:01]  *** Listing of results directory ***
[2025-11-27 04:38:01] total 407536
[2025-11-27 04:38:01] -rw-r--r-- 1 boinc boinc    576529 Nov 26 03:38 pilot3.tar.gz
[2025-11-27 04:38:01] -rw-r--r-- 1 boinc boinc      5112 Nov 26 03:56 queuedata.json
[2025-11-27 04:38:01] -rwx------ 1 boinc boinc     36292 Nov 26 03:59 runpilot2-wrapper.sh
[2025-11-27 04:38:01] -rw-r--r-- 1 boinc boinc       100 Nov 27 04:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 04:38:01] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 04:33 run_atlas
[2025-11-27 04:38:01] -rw-r--r-- 1 boinc boinc       105 Nov 27 04:33 job.xml
[2025-11-27 04:38:01] -rw-r--r-- 2 boinc boinc 413128256 Nov 27 04:33 EVNT.47483658._002401.pool.root.1
[2025-11-27 04:38:01] -rw-r--r-- 2 boinc boinc    590105 Nov 27 04:33 input.tar.gz
[2025-11-27 04:38:01] -rw-r--r-- 2 boinc boinc     15847 Nov 27 04:33 start_atlas.sh
[2025-11-27 04:38:01] drwxrwx--x 2 boinc boinc      4096 Nov 27 04:33 shared
[2025-11-27 04:38:01] -rw-r--r-- 1 boinc boinc         0 Nov 27 04:33 boinc_setup_complete
[2025-11-27 04:38:01] -rw-r--r-- 1 boinc boinc      6196 Nov 27 04:33 init_data.xml
[2025-11-27 04:38:01] -rw-r--r-- 1 boinc boinc         0 Nov 27 04:33 boinc_lockfile
[2025-11-27 04:38:01] -rw-r--r-- 1 boinc boinc      2785 Nov 27 04:33 pandaJob.out
[2025-11-27 04:38:01] -rw------- 1 boinc boinc    991546 Nov 27 04:33 agis_schedconf.cvmfs.json
[2025-11-27 04:38:01] -rw------- 1 boinc boinc   1516240 Nov 27 04:33 agis_ddmendpoints.agis.ALL.json
[2025-11-27 04:38:01] drwx------ 5 boinc boinc      4096 Nov 27 04:33 pilot3
[2025-11-27 04:38:01] -rw-r--r-- 1 boinc boinc       522 Nov 27 04:34 boinc_task_state.xml
[2025-11-27 04:38:01] -rw------- 1 boinc boinc       951 Nov 27 04:35 memory_monitor_summary.json
[2025-11-27 04:38:01] -rw------- 1 boinc boinc     54280 Nov 27 04:35 log.47556161._003834.job.log.tgz.1
[2025-11-27 04:38:01] -rw------- 1 boinc boinc        95 Nov 27 04:36 pilot_heartbeat.json
[2025-11-27 04:38:01] -rw------- 1 boinc boinc      8402 Nov 27 04:37 heartbeat.json
[2025-11-27 04:38:01] -rw-r--r-- 1 boinc boinc        22 Nov 27 04:37 wrapper_checkpoint.txt
[2025-11-27 04:38:01] -rw-r--r-- 1 boinc boinc      8192 Nov 27 04:37 boinc_mmap_file
[2025-11-27 04:38:01] -rw------- 1 boinc boinc      4938 Nov 27 04:38 pilotlog.txt
[2025-11-27 04:38:01] -rw------- 1 boinc boinc     93643 Nov 27 04:38 log.47556161._003834.job.log.1
[2025-11-27 04:38:01] -rw------- 1 boinc boinc       186 Nov 27 04:38 output.list
[2025-11-27 04:38:01] -rw-r--r-- 1 boinc boinc       620 Nov 27 04:38 runtime_log
[2025-11-27 04:38:01] -rw------- 1 boinc boinc    163840 Nov 27 04:38 result.tar.gz
[2025-11-27 04:38:01] -rw-r--r-- 1 boinc boinc      8744 Nov 27 04:38 runtime_log.err
[2025-11-27 04:38:01] -rw------- 1 boinc boinc       649 Nov 27 04:38 MTpLDmivKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1lMKDm01mJDn.diag
[2025-11-27 04:38:01] -rw-r--r-- 1 boinc boinc      8009 Nov 27 04:38 stderr.txt
[2025-11-27 04:38:01] No HITS result produced
[2025-11-27 04:38:01]  *** Contents of shared directory: ***
[2025-11-27 04:38:01] total 404208
[2025-11-27 04:38:01] -rw-r--r-- 2 boinc boinc 413128256 Nov 27 04:33 ATLAS.root_0
[2025-11-27 04:38:01] -rw-r--r-- 2 boinc boinc    590105 Nov 27 04:33 input.tar.gz
[2025-11-27 04:38:01] -rw-r--r-- 2 boinc boinc     15847 Nov 27 04:33 start_atlas.sh
[2025-11-27 04:38:01] -rw------- 1 boinc boinc    163840 Nov 27 04:38 result.tar.gz
04:38:02 (2231561): run_atlas exited; CPU time 31.719569
04:38:02 (2231561): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN