Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-27 16:50:05 (35184): vboxwrapper version 26210
2025-11-27 16:50:05 (35184): BOINC client version: 8.0.2
2025-11-27 16:50:06 (35184): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-11-27 16:50:06 (35184): Successfully copied 'init_data.xml' to the shared directory.
2025-11-27 16:50:07 (35184): Create VM. (boinc_8b6dd46bd03fdfc3, slot#1)
2025-11-27 16:50:07 (35184): Setting Memory Size for VM. (4800MB)
2025-11-27 16:50:07 (35184): Setting CPU Count for VM. (8)
2025-11-27 16:50:08 (35184): Setting Chipset Options for VM.
2025-11-27 16:50:08 (35184): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-27 16:50:08 (35184): Setting Boot Options for VM.
2025-11-27 16:50:09 (35184): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-27 16:50:09 (35184): Enabling VM Network Access.
2025-11-27 16:50:09 (35184): Disabling USB Support for VM.
2025-11-27 16:50:09 (35184): Disabling COM Port Support for VM.
2025-11-27 16:50:10 (35184): Disabling LPT Port Support for VM.
2025-11-27 16:50:10 (35184): Disabling Audio Support for VM.
2025-11-27 16:50:10 (35184): Disabling Clipboard Support for VM.
2025-11-27 16:50:10 (35184): Disabling Drag and Drop Support for VM.
2025-11-27 16:50:11 (35184): Adding storage controller(s) to VM.
2025-11-27 16:50:11 (35184): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-27 16:50:13 (35184): Adding VirtualBox Guest Additions to VM.
2025-11-27 16:50:13 (35184): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-27 16:50:14 (35184): forwarding host port 4341 to guest port 80
2025-11-27 16:50:14 (35184): Enabling remote desktop for VM.
2025-11-27 16:50:14 (35184): Required extension pack not installed, remote desktop not enabled.
2025-11-27 16:50:14 (35184): Enabling shared directory for VM.
2025-11-27 16:50:15 (35184): Starting VM using VBoxManage interface. (boinc_8b6dd46bd03fdfc3, slot#1)
2025-11-27 16:50:20 (35184): Successfully started VM. (PID = '15828')
2025-11-27 16:50:20 (35184): Reporting VM Process ID to BOINC.
2025-11-27 16:50:20 (35184): Guest Log: BIOS: VirtualBox 7.0.6
2025-11-27 16:50:20 (35184): Guest Log: CPUID EDX: 0x178bfbff
2025-11-27 16:50:20 (35184): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-27 16:50:20 (35184): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-27 16:50:20 (35184): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-27 16:50:20 (35184): Detected: Web Application Enabled (http://localhost:4341)
2025-11-27 16:50:20 (35184): Preference change detected
2025-11-27 16:50:20 (35184): Setting CPU throttle for VM. (80%)
2025-11-27 16:50:20 (35184): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 16:50:22 (35184): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-27 16:50:22 (35184): Guest Log: BIOS: Booting from Hard Disk...
2025-11-27 16:50:24 (35184): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-27 16:50:24 (35184): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-27 16:50:24 (35184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-27 16:50:31 (35184): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-27 16:50:31 (35184): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-27 16:50:35 (35184): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-27 16:50:35 (35184): Guest Log: 00:00:00.000108 main     Log opened 2025-11-27T16:50:33.293098000Z
2025-11-27 16:50:35 (35184): Guest Log: 00:00:00.000193 main     OS Product: Linux
2025-11-27 16:50:35 (35184): Guest Log: 00:00:00.000213 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-27 16:50:35 (35184): Guest Log: 00:00:00.000229 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-27 16:50:35 (35184): Guest Log: 00:00:00.000245 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-27 16:50:35 (35184): Guest Log: 00:00:00.000245 main     Process ID: 1370
2025-11-27 16:50:35 (35184): Guest Log: 00:00:00.000246 main     Package type: LINUX_64BITS_GENERIC
2025-11-27 16:50:35 (35184): Guest Log: 00:00:00.000864 main     5.2.32 r132073 started. Verbose level = 0
2025-11-27 16:50:35 (35184): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-27 16:50:35 (35184): Guest Log: [INFO] Mounting shared directory
2025-11-27 16:50:35 (35184): Guest Log: [INFO] Checking for init_data.xml
2025-11-27 16:50:40 (35184): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-27 16:50:40 (35184): Guest Log: [INFO] Detected branch: prod
2025-11-27 16:50:40 (35184): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-27 16:50:40 (35184): Guest Log: Copying input files
2025-11-27 16:50:41 (35184): Guest Log: Copied input files into RunAtlas.
2025-11-27 16:50:41 (35184): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-27 16:50:41 (35184): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-27 16:50:41 (35184): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-27 16:50:41 (35184): Guest Log: Further information can be found at the LHC@home message board.
2025-11-27 16:50:45 (35184): Guest Log: 00:00:10.060382 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 376 464 000ns (GuestNow=1 764 258 644 918 429 000 ns GuestLast=1 764 262 233 294 893 000 ns fSetTimeLastLoop=true )
2025-11-27 16:51:35 (35184): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-27 16:51:37 (35184): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-27 16:51:37 (35184): Guest Log: 2.6.3.0 1648 0 30144 153372 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-27 16:51:37 (35184): Guest Log: copied the webapp to /var/www
2025-11-27 16:51:37 (35184): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-27 16:51:37 (35184): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-27 16:51:37 (35184): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-27 16:51:37 (35184): Guest Log:  *** Starting ATLAS job. (PandaID=6898120322 taskID=47556161) ***
2025-11-27 18:30:24 (35184): Status Report: Elapsed Time: '6000.000000'
2025-11-27 18:30:24 (35184): Status Report: CPU Time: '39218.078125'
2025-11-27 20:10:28 (35184): Status Report: Elapsed Time: '12000.000000'
2025-11-27 20:10:28 (35184): Status Report: CPU Time: '81227.187500'
2025-11-27 21:50:32 (35184): Status Report: Elapsed Time: '18000.000000'
2025-11-27 21:50:32 (35184): Status Report: CPU Time: '123175.406250'
2025-11-27 22:45:39 (35184): Guest Log:  *** Job finished ***
2025-11-27 22:45:39 (35184): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:20,828 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:20,828 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:32,090 | INFO     | [monitor] cgroup control has ended
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:32,730 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139887480301376)>', '<ExcThread(monitor, started 139886573102848)>']
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:33,040 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:33,040 | INFO     | [monitor] control thread has ended
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:37,737 | INFO     | all workflow threads have been joined
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:37,737 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:37,737 | INFO     | traces error code: 0
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:37,737 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:37,812 [wrapper] ==== pilot stdout END ====
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:37,815 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:37,819 [wrapper] pilotpid: 6084
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:37,823 [wrapper] Pilot exit status: 0
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:37,837 [wrapper] pandaids: 6898120322
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:37,863 [wrapper] cleanup supervisor_pilot 27008 6085
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:37,867 [wrapper] Test setup, not cleaning
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:37,871 [wrapper] apfmon messages muted
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:37,875 [wrapper] ==== wrapper stdout END ====
2025-11-27 22:45:39 (35184): Guest Log: 2025-11-27 21:45:37,879 [wrapper] ==== wrapper stderr END ====
2025-11-27 22:45:39 (35184): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 22:45:39 (35184): Guest Log:     "exeErrorCode": 0,
2025-11-27 22:45:39 (35184): Guest Log:     "exeErrorDiag": "",
2025-11-27 22:45:39 (35184): Guest Log:     "pilotErrorCode": 0,
2025-11-27 22:45:39 (35184): Guest Log:     "pilotErrorDiag": "",
2025-11-27 22:45:39 (35184): Guest Log:  *** Listing of results directory ***
2025-11-27 22:45:39 (35184): Guest Log: total 903128
2025-11-27 22:45:39 (35184): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 26 02:38 pilot3.tar.gz
2025-11-27 22:45:39 (35184): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 26 03:24 runpilot2-wrapper.sh
2025-11-27 22:45:39 (35184): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 26 03:24 queuedata.json
2025-11-27 22:45:39 (35184): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 27 15:50 start_atlas.sh
2025-11-27 22:45:39 (35184): Guest Log: -rwxr-xr-x. 1 atlas atlas    590101 Nov 27 15:50 input.tar.gz
2025-11-27 22:45:39 (35184): Guest Log: -rwxr-xr-x. 1 atlas atlas      9247 Nov 27 15:50 init_data.xml
2025-11-27 22:45:39 (35184): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 27 15:50 EVNT.47483658._002421.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 22:45:39 (35184): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 27 15:51 pandaJob.out
2025-11-27 22:45:39 (35184): Guest Log: -rw-------. 1 atlas atlas    991572 Nov 27 15:52 agis_schedconf.cvmfs.json
2025-11-27 22:45:39 (35184): Guest Log: drwx------. 5 atlas atlas      4096 Nov 27 15:52 pilot3
2025-11-27 22:45:39 (35184): Guest Log: -rw-------. 1 atlas atlas 912041300 Nov 27 21:44 HITS.47556161._004032.pool.root.1
2025-11-27 22:45:39 (35184): Guest Log: -rw-------. 1 atlas atlas      1040 Nov 27 21:44 memory_monitor_summary.json
2025-11-27 22:45:39 (35184): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 21:44 agis_ddmendpoints.agis.ALL.json
2025-11-27 22:45:39 (35184): Guest Log: -rw-------. 1 atlas atlas   1660308 Nov 27 21:44 log.47556161._004032.job.log.tgz.1
2025-11-27 22:45:39 (35184): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 21:44 pilot_heartbeat.json
2025-11-27 22:45:39 (35184): Guest Log: -rw-------. 1 atlas atlas      8636 Nov 27 21:44 heartbeat.json
2025-11-27 22:45:39 (35184): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 27 21:45 pilotlog.txt
2025-11-27 22:45:39 (35184): Guest Log: -rw-------. 1 atlas atlas   2795009 Nov 27 21:45 log.47556161._004032.job.log.1
2025-11-27 22:45:39 (35184): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 21:45 output.list
2025-11-27 22:45:39 (35184): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 21:45 runtime_log
2025-11-27 22:45:39 (35184): Guest Log: -rw-------. 1 atlas atlas   4474880 Nov 27 21:45 result.tar.gz
2025-11-27 22:45:39 (35184): Guest Log: -rw-r--r--. 1 atlas atlas      8771 Nov 27 21:45 runtime_log.err
2025-11-27 22:45:39 (35184): Guest Log: -rw-------. 1 atlas atlas       669 Nov 27 21:45 gryKDmbJLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8nMKDmEYwpen.diag
2025-11-27 22:45:39 (35184): Guest Log: Looking for outputfile HITS.47556161._004032.pool.root.1
2025-11-27 22:45:39 (35184): Guest Log: HITS file was successfully produced
2025-11-27 22:45:39 (35184): Guest Log: -rw-------. 1 atlas atlas 912041300 Nov 27 21:44 /home/atlas/RunAtlas/HITS.47556161._004032.pool.root.1
2025-11-27 22:45:42 (35184): Guest Log: Successfully finished the ATLAS job!
2025-11-27 22:45:42 (35184): Guest Log: Copying the results back to the shared directory!
2025-11-27 22:45:42 (35184): Guest Log:  *** Contents of shared directory: ***
2025-11-27 22:45:42 (35184): Guest Log: total 1295760
2025-11-27 22:45:42 (35184): Guest Log: -rwxrwxrwx. 1 root root 409713207 Nov 27 15:50 ATLAS.root_0
2025-11-27 22:45:42 (35184): Guest Log: -rwxrwxrwx. 1 root root 912041300 Nov 27 21:45 HITS.pool.root.1
2025-11-27 22:45:42 (35184): Guest Log: -rwxrwxrwx. 1 root root      9247 Nov 27 15:50 init_data.xml
2025-11-27 22:45:42 (35184): Guest Log: -rwxrwxrwx. 1 root root    590101 Nov 27 02:57 input.tar.gz
2025-11-27 22:45:42 (35184): Guest Log: -rwxrwxrwx. 1 root root   4474880 Nov 27  2025 result.tar.gz
2025-11-27 22:45:42 (35184): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 27 02:57 start_atlas.sh
2025-11-27 22:45:42 (35184): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 22:45:42 (35184): VM Completion File Detected.
2025-11-27 22:45:42 (35184): Powering off VM.
2025-11-27 22:45:42 (35184): Successfully stopped VM.
2025-11-27 22:45:42 (35184): Deregistering VM. (boinc_8b6dd46bd03fdfc3, slot#1)
2025-11-27 22:45:42 (35184): Removing network bandwidth throttle group from VM.
2025-11-27 22:45:42 (35184): Removing VM from VirtualBox.
2025-11-27 22:45:48 (35184): called boinc_finish(0)

</stderr_txt>
]]>

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