Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-27 05:14:42 (9076): vboxwrapper version 26210
2025-11-27 05:14:42 (9076): BOINC client version: 8.0.2
2025-11-27 05:14:42 (9076): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-27 05:14:42 (9076): Successfully copied 'init_data.xml' to the shared directory.
2025-11-27 05:14:43 (9076): Create VM. (boinc_15114521b6efa15a, slot#5)
2025-11-27 05:14:43 (9076): Setting Memory Size for VM. (4700MB)
2025-11-27 05:14:43 (9076): Setting CPU Count for VM. (7)
2025-11-27 05:14:44 (9076): Setting Chipset Options for VM.
2025-11-27 05:14:44 (9076): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-27 05:14:44 (9076): Setting Boot Options for VM.
2025-11-27 05:14:45 (9076): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-27 05:14:45 (9076): Enabling VM Network Access.
2025-11-27 05:14:45 (9076): Disabling USB Support for VM.
2025-11-27 05:14:46 (9076): Disabling COM Port Support for VM.
2025-11-27 05:14:46 (9076): Disabling LPT Port Support for VM.
2025-11-27 05:14:46 (9076): Disabling Audio Support for VM.
2025-11-27 05:14:46 (9076): Disabling Clipboard Support for VM.
2025-11-27 05:14:47 (9076): Disabling Drag and Drop Support for VM.
2025-11-27 05:14:47 (9076): Adding storage controller(s) to VM.
2025-11-27 05:14:47 (9076): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-27 05:14:48 (9076): Adding VirtualBox Guest Additions to VM.
2025-11-27 05:14:48 (9076): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-27 05:14:49 (9076): forwarding host port 49340 to guest port 80
2025-11-27 05:14:49 (9076): Enabling remote desktop for VM.
2025-11-27 05:14:49 (9076): Required extension pack not installed, remote desktop not enabled.
2025-11-27 05:14:49 (9076): Enabling shared directory for VM.
2025-11-27 05:14:50 (9076): Starting VM using VBoxManage interface. (boinc_15114521b6efa15a, slot#5)
2025-11-27 05:14:53 (9076): Successfully started VM. (PID = '8072')
2025-11-27 05:14:53 (9076): Reporting VM Process ID to BOINC.
2025-11-27 05:14:53 (9076): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-27 05:14:53 (9076): Guest Log: CPUID EDX: 0x178bfbff
2025-11-27 05:14:53 (9076): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-27 05:14:53 (9076): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-27 05:14:53 (9076): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-27 05:14:53 (9076): Detected: Web Application Enabled (http://localhost:49340)
2025-11-27 05:14:53 (9076): Preference change detected
2025-11-27 05:14:53 (9076): Setting CPU throttle for VM. (100%)
2025-11-27 05:14:53 (9076): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 05:14:55 (9076): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-27 05:14:56 (9076): Guest Log: BIOS: Booting from Hard Disk...
2025-11-27 05:14:58 (9076): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-27 05:14:58 (9076): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-27 05:14:58 (9076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-27 05:15:03 (9076): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-27 05:15:03 (9076): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-27 05:15:07 (9076): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-27 05:15:07 (9076): Guest Log: 00:00:00.000067 main     Log opened 2025-11-27T05:15:06.745490000Z
2025-11-27 05:15:07 (9076): Guest Log: 00:00:00.000119 main     OS Product: Linux
2025-11-27 05:15:07 (9076): Guest Log: 00:00:00.000132 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-27 05:15:07 (9076): Guest Log: 00:00:00.000144 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-27 05:15:07 (9076): Guest Log: 00:00:00.000155 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-27 05:15:07 (9076): Guest Log: 00:00:00.000156 main     Process ID: 1354
2025-11-27 05:15:07 (9076): Guest Log: 00:00:00.000156 main     Package type: LINUX_64BITS_GENERIC
2025-11-27 05:15:07 (9076): Guest Log: 00:00:00.000615 main     5.2.32 r132073 started. Verbose level = 0
2025-11-27 05:15:07 (9076): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-27 05:15:07 (9076): Guest Log: [INFO] Mounting shared directory
2025-11-27 05:15:07 (9076): Guest Log: [INFO] Checking for init_data.xml
2025-11-27 05:15:09 (9076): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-27 05:15:09 (9076): Guest Log: [INFO] Detected branch: prod
2025-11-27 05:15:09 (9076): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-27 05:15:09 (9076): Guest Log: Copying input files
2025-11-27 05:15:11 (9076): Guest Log: Copied input files into RunAtlas.
2025-11-27 05:15:11 (9076): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-27 05:15:11 (9076): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-27 05:15:11 (9076): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-27 05:15:11 (9076): Guest Log: Further information can be found at the LHC@home message board.
2025-11-27 05:15:16 (9076): Guest Log: 00:00:10.048538 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 590 878 312 000ns (GuestNow=1 764 216 915 868 954 000 ns GuestLast=1 764 220 506 747 266 000 ns fSetTimeLastLoop=true )
2025-11-27 05:15:19 (9076): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-27 05:15:19 (9076): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-27 05:15:19 (9076): Guest Log: 2.6.3.0 1630 0 32196 153347 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-27 05:15:21 (9076): Guest Log: copied the webapp to /var/www
2025-11-27 05:15:21 (9076): Guest Log: ATHENA_PROC_NUMBER=7
2025-11-27 05:15:21 (9076): Guest Log: ATHENA_CORE_NUMBER=7
2025-11-27 05:15:21 (9076): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-27 05:15:21 (9076): Guest Log:  *** Starting ATLAS job. (PandaID=6898120532 taskID=47556161) ***
2025-11-27 06:54:56 (9076): Status Report: Elapsed Time: '6000.000000'
2025-11-27 06:54:56 (9076): Status Report: CPU Time: '38434.359375'
2025-11-27 08:34:58 (9076): Status Report: Elapsed Time: '12000.000000'
2025-11-27 08:34:58 (9076): Status Report: CPU Time: '80055.312500'
2025-11-27 10:15:01 (9076): Status Report: Elapsed Time: '18000.000000'
2025-11-27 10:15:01 (9076): Status Report: CPU Time: '121677.796875'
2025-11-27 11:55:03 (9076): Status Report: Elapsed Time: '24000.000000'
2025-11-27 11:55:03 (9076): Status Report: CPU Time: '163295.859375'
2025-11-27 13:35:06 (9076): Status Report: Elapsed Time: '30000.000000'
2025-11-27 13:35:06 (9076): Status Report: CPU Time: '204920.625000'
2025-11-27 13:53:52 (9076): Guest Log:  *** Job finished ***
2025-11-27 13:53:52 (9076): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:03:38,858 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:03:38,858 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:08,528 | INFO     | [monitor] cgroup control has ended
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:09,773 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140544990447424)>', '<ExcThread(monitor, started 140544248362752)>']
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:10,202 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:10,202 | INFO     | [monitor] control thread has ended
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:14,825 | INFO     | all workflow threads have been joined
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:14,825 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:14,826 | INFO     | traces error code: 0
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:14,826 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:14,947 [wrapper] ==== pilot stdout END ====
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:14,951 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:14,954 [wrapper] pilotpid: 6055
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:14,957 [wrapper] Pilot exit status: 0
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:14,972 [wrapper] pandaids: 6898120532
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:15,004 [wrapper] cleanup supervisor_pilot 11051 6056
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:15,009 [wrapper] Test setup, not cleaning
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:15,014 [wrapper] apfmon messages muted
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:15,019 [wrapper] ==== wrapper stdout END ====
2025-11-27 13:53:52 (9076): Guest Log: 2025-11-27 13:04:15,023 [wrapper] ==== wrapper stderr END ====
2025-11-27 13:53:52 (9076): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 13:53:52 (9076): Guest Log:     "exeErrorCode": 0,
2025-11-27 13:53:52 (9076): Guest Log:     "exeErrorDiag": "",
2025-11-27 13:53:52 (9076): Guest Log:     "pilotErrorCode": 0,
2025-11-27 13:53:52 (9076): Guest Log:     "pilotErrorDiag": "",
2025-11-27 13:53:52 (9076): Guest Log:  *** Listing of results directory ***
2025-11-27 13:53:52 (9076): Guest Log: total 910808
2025-11-27 13:53:52 (9076): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 26 03:33 pilot3.tar.gz
2025-11-27 13:53:52 (9076): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 26 03:36 queuedata.json
2025-11-27 13:53:52 (9076): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 26 03:39 runpilot2-wrapper.sh
2025-11-27 13:53:52 (9076): Guest Log: -rwxr-xr-x. 1 atlas atlas      9128 Nov 27 04:15 init_data.xml
2025-11-27 13:53:52 (9076): Guest Log: -rwxr-xr-x. 1 atlas atlas    590106 Nov 27 04:15 input.tar.gz
2025-11-27 13:53:52 (9076): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 27 04:15 start_atlas.sh
2025-11-27 13:53:52 (9076): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 27 04:15 EVNT.47483658._002435.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 13:53:52 (9076): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 27 04:15 pandaJob.out
2025-11-27 13:53:52 (9076): Guest Log: -rw-------. 1 atlas atlas    991570 Nov 27 04:16 agis_schedconf.cvmfs.json
2025-11-27 13:53:52 (9076): Guest Log: drwx------. 5 atlas atlas      4096 Nov 27 04:16 pilot3
2025-11-27 13:53:52 (9076): Guest Log: -rw-------. 1 atlas atlas 916670526 Nov 27 13:02 HITS.47556161._004176.pool.root.1
2025-11-27 13:53:52 (9076): Guest Log: -rw-------. 1 atlas atlas      1039 Nov 27 13:02 memory_monitor_summary.json
2025-11-27 13:53:52 (9076): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 13:02 agis_ddmendpoints.agis.ALL.json
2025-11-27 13:53:52 (9076): Guest Log: -rw-------. 1 atlas atlas   1686762 Nov 27 13:02 log.47556161._004176.job.log.tgz.1
2025-11-27 13:53:52 (9076): Guest Log: -rw-------. 1 atlas atlas      8638 Nov 27 13:03 heartbeat.json
2025-11-27 13:53:52 (9076): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 13:03 pilot_heartbeat.json
2025-11-27 13:53:52 (9076): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 27 13:04 pilotlog.txt
2025-11-27 13:53:52 (9076): Guest Log: -rw-------. 1 atlas atlas   4389605 Nov 27 13:04 log.47556161._004176.job.log.1
2025-11-27 13:53:52 (9076): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 13:04 output.list
2025-11-27 13:53:52 (9076): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 13:04 runtime_log
2025-11-27 13:53:52 (9076): Guest Log: -rw-------. 1 atlas atlas   6092800 Nov 27 13:04 result.tar.gz
2025-11-27 13:53:52 (9076): Guest Log: -rw-r--r--. 1 atlas atlas      8744 Nov 27 13:04 runtime_log.err
2025-11-27 13:53:52 (9076): Guest Log: -rw-------. 1 atlas atlas       660 Nov 27 13:04 cDALDmsYLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPrJKDmJUU5Pm.diag
2025-11-27 13:53:52 (9076): Guest Log: Looking for outputfile HITS.47556161._004176.pool.root.1
2025-11-27 13:53:52 (9076): Guest Log: HITS file was successfully produced
2025-11-27 13:53:52 (9076): Guest Log: -rw-------. 1 atlas atlas 916670526 Nov 27 13:02 /home/atlas/RunAtlas/HITS.47556161._004176.pool.root.1
2025-11-27 13:53:55 (9076): Guest Log: Successfully finished the ATLAS job!
2025-11-27 13:53:55 (9076): Guest Log: Copying the results back to the shared directory!
2025-11-27 13:53:55 (9076): Guest Log:  *** Contents of shared directory: ***
2025-11-27 13:53:55 (9076): Guest Log: total 1302796
2025-11-27 13:53:55 (9076): Guest Log: -rwxrwxrwx. 1 root root 410670214 Nov 27 04:14 ATLAS.root_0
2025-11-27 13:53:55 (9076): Guest Log: -rwxrwxrwx. 1 root root 916670526 Nov 27 12:53 HITS.pool.root.1
2025-11-27 13:53:55 (9076): Guest Log: -rwxrwxrwx. 1 root root      9128 Nov 27 04:14 init_data.xml
2025-11-27 13:53:55 (9076): Guest Log: -rwxrwxrwx. 1 root root    590106 Nov 27 03:11 input.tar.gz
2025-11-27 13:53:55 (9076): Guest Log: -rwxrwxrwx. 1 root root   6092800 Nov 27 12:53 result.tar.gz
2025-11-27 13:53:55 (9076): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 27 03:11 start_atlas.sh
2025-11-27 13:53:55 (9076): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 13:53:55 (9076): VM Completion File Detected.
2025-11-27 13:53:55 (9076): Powering off VM.
2025-11-27 13:53:56 (9076): Successfully stopped VM.
2025-11-27 13:53:56 (9076): Deregistering VM. (boinc_15114521b6efa15a, slot#5)
2025-11-27 13:53:56 (9076): Removing network bandwidth throttle group from VM.
2025-11-27 13:53:56 (9076): Removing VM from VirtualBox.
2025-11-27 13:54:01 (9076): called boinc_finish(0)

</stderr_txt>
]]>

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