Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:38:14 (3646069): wrapper (7.7.26015): starting
23:38:14 (3646069): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 23:38:14] Arguments: --nthreads 8
[2025-11-26 23:38:14] Threads: 8
[2025-11-26 23:38:14] Checking for CVMFS
[2025-11-26 23:38:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:38:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:38:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:38:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:38:15] 2.13.2.0 14352 35337 216684 153347 2 352 35673915 40960000 26105 16776704 0 275623178 99.679 222586638 48625 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 23:38:15] CVMFS is ok
[2025-11-26 23:38:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:38:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:38:15] Further information can be found at the LHC@home message board.
[2025-11-26 23:38:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:38:15] Checking for apptainer binary...
[2025-11-26 23:38:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:38:15] Running /usr/bin/apptainer --version
[2025-11-26 23:38:15] apptainer version 1.4.4-1.el9
[2025-11-26 23:38:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:38:15] c-208-36.aglt2.org
[2025-11-26 23:38:15] apptainer works
[2025-11-26 23:38:15] Set ATHENA_PROC_NUMBER=8
[2025-11-26 23:38:15] Set ATHENA_CORE_NUMBER=8
[2025-11-26 23:38:15] Starting ATLAS job with PandaID=6897139679
[2025-11-26 23:38:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:37:20]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:37:20] 2025-11-27 22:35:17,266 | INFO     | monitor loop #4016: job 0:6897139679 is in state 'finished'
[2025-11-27 17:37:20] 2025-11-27 22:35:17,266 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:37:20] 2025-11-27 22:35:18,286 | INFO     | time since job start (64598s) is within the limit (172800.0s)
[2025-11-27 17:37:20] 2025-11-27 22:35:19,771 | INFO     | monitor loop #4017: job 0:6897139679 is in state 'finished'
[2025-11-27 17:37:20] 2025-11-27 22:35:19,771 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:37:20] 2025-11-27 22:35:20,293 | INFO     | time since job start (64600s) is within the limit (172800.0s)
[2025-11-27 17:37:20] 2025-11-27 22:35:22,276 | INFO     | monitor loop #4018: job 0:6897139679 is in state 'finished'
[2025-11-27 17:37:20] 2025-11-27 22:35:22,278 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:37:20] 2025-11-27 22:35:22,300 | INFO     | time since job start (64602s) is within the limit (172800.0s)
[2025-11-27 17:37:20] 2025-11-27 22:35:24,460 | INFO     | PID=3653617 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:37:20] 2025-11-27 22:35:24,460 | INFO     | .. there are 30 such processes running
[2025-11-27 17:37:20] 2025-11-27 22:35:24,783 | INFO     | monitor loop #4019: job 0:6897139679 is in state 'finished'
[2025-11-27 17:37:20] 2025-11-27 22:35:24,783 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:37:20] 2025-11-27 22:35:25,461 | INFO     | time since job start (64605s) is within the limit (172800.0s)
[2025-11-27 17:37:20] 2025-11-27 22:35:27,288 | INFO     | monitor loop #4020: job 0:6897139679 is in state 'finished'
[2025-11-27 17:37:20] 2025-11-27 22:35:27,288 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:37:20] 2025-11-27 22:35:27,475 | INFO     | time since job start (64607s) is within the limit (172800.0s)
[2025-11-27 17:37:20] 2025-11-27 22:35:27,680 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 17:37:20] 2025-11-27 22:35:27,685 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3786.742031249999
[2025-11-27 17:37:20] 2025-11-27 22:35:27,698 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6897139679/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:37:20] 2025-11-27 22:35:27,699 | INFO     | extracted standard info from prmon json
[2025-11-27 17:37:20] 2025-11-27 22:35:27,699 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:37:20] 2025-11-27 22:35:27,699 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:37:20] 2025-11-27 22:35:27,708 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:37:20] 2025-11-27 22:35:27,709 | INFO     | sum of square deviations: 367211502963.1805
[2025-11-27 17:37:20] 2025-11-27 22:35:27,726 | INFO     | sum of deviations: 2726393490836.4004
[2025-11-27 17:37:20] 2025-11-27 22:35:27,727 | INFO     | mean x: 1764250625.583176
[2025-11-27 17:37:20] 2025-11-27 22:35:27,727 | INFO     | mean y: 2852915.393194707
[2025-11-27 17:37:20] 2025-11-27 22:35:27,727 | INFO     | intersect: -13095978093.384628
[2025-11-27 17:37:20] 2025-11-27 22:35:27,727 | INFO     | chi2: 22.468038664368812
[2025-11-27 17:37:20] 2025-11-27 22:35:27,728 | INFO     | sum of square deviations: 362029978584.7863
[2025-11-27 17:37:20] 2025-11-27 22:35:27,740 | INFO     | sum of deviations: 3088144581044.0156
[2025-11-27 17:37:20] 2025-11-27 22:35:27,741 | INFO     | mean x: 1764250473.088319
[2025-11-27 17:37:20] 2025-11-27 22:35:27,741 | INFO     | mean y: 2863560.472934473
[2025-11-27 17:37:20] 2025-11-27 22:35:27,741 | INFO     | intersect: -15046333634.107092
[2025-11-27 17:37:20] 2025-11-27 22:35:27,741 | INFO     | chi2: 18.998654041291914
[2025-11-27 17:37:20] 2025-11-27 22:35:27,741 | INFO     | current chi2=18.998654041291914 (change=15.441421812126666 %)
[2025-11-27 17:37:20] 2025-11-27 22:35:27,741 | INFO     | right removable region: 1052
[2025-11-27 17:37:20] 2025-11-27 22:35:27,742 | INFO     | sum of square deviations: 362029279524.7865
[2025-11-27 17:37:20] 2025-11-27 22:35:27,754 | INFO     | sum of deviations: 2311279306314.0073
[2025-11-27 17:37:20] 2025-11-27 22:35:27,754 | INFO     | mean x: 1764250778.088319
[2025-11-27 17:37:20] 2025-11-27 22:35:27,754 | INFO     | mean y: 2865129.6020892686
[2025-11-27 17:37:20] 2025-11-27 22:35:27,754 | INFO     | intersect: -11260523068.989008
[2025-11-27 17:37:20] 2025-11-27 22:35:27,755 | INFO     | chi2: 18.413029892163284
[2025-11-27 17:37:20] 2025-11-27 22:35:27,755 | INFO     | current chi2=18.413029892163284 (change=18.047898318050386 %)
[2025-11-27 17:37:20] 2025-11-27 22:35:27,755 | INFO     | left removable region: 10
[2025-11-27 17:37:20] 2025-11-27 22:35:27,756 | INFO     | sum of square deviations: 350801300756.1199
[2025-11-27 17:37:20] 2025-11-27 22:35:27,767 | INFO     | sum of deviations: 2373371444090.7373
[2025-11-27 17:37:20] 2025-11-27 22:35:27,768 | INFO     | mean x: 1764250747.599808
[2025-11-27 17:37:20] 2025-11-27 22:35:27,768 | INFO     | mean y: 2889561.6468330133
[2025-11-27 17:37:20] 2025-11-27 22:35:27,768 | INFO     | intersect: -11933275827.546272
[2025-11-27 17:37:20] 2025-11-27 22:35:27,769 | INFO     | chi2: 10.836900935695137
[2025-11-27 17:37:20] 2025-11-27 22:35:27,769 | INFO     | current memory leak: 6.77 B/s (using 1042 data points, chi2=10.84)
[2025-11-27 17:37:20] 2025-11-27 22:35:27,770 | INFO     | could have reported an average CPU frequency of 3777 MHz (39 samples)
[2025-11-27 17:37:20] 2025-11-27 22:35:27,770 | INFO     | ..............................
[2025-11-27 17:37:20] 2025-11-27 22:35:27,770 | INFO     | . Timing measurements:
[2025-11-27 17:37:20] 2025-11-27 22:35:27,770 | INFO     | . get job = 0 s
[2025-11-27 17:37:20] 2025-11-27 22:35:27,770 | INFO     | . initial setup = 2 s
[2025-11-27 17:37:20] 2025-11-27 22:35:27,770 | INFO     | . payload setup = 17 s
[2025-11-27 17:37:20] 2025-11-27 22:35:27,770 | INFO     | . stage-in = 0 s
[2025-11-27 17:37:20] 2025-11-27 22:35:27,770 | INFO     | . payload execution = 64525 s
[2025-11-27 17:37:20] 2025-11-27 22:35:27,770 | INFO     | . stage-out = 5 s
[2025-11-27 17:37:20] 2025-11-27 22:35:27,770 | INFO     | . log creation = 1 s
[2025-11-27 17:37:20] 2025-11-27 22:35:27,770 | INFO     | ..............................
[2025-11-27 17:37:20] 2025-11-27 22:35:27,821 | INFO     | 
[2025-11-27 17:37:20] 2025-11-27 22:35:27,821 | INFO     | job summary report
[2025-11-27 17:37:20] 2025-11-27 22:35:27,821 | INFO     | --------------------------------------------------
[2025-11-27 17:37:20] 2025-11-27 22:35:27,821 | INFO     | PanDA job id: 6897139679
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | task id: 47556161
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | errors: (none)
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | pilot state: finished 
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | transexitcode: 0
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | exeerrorcode: 0
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | exeerrordiag: 
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | exitcode: 0
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | exitmsg: OK
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | cpuconsumptiontime: 142946 s
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | nevents: 1000
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | neventsw: 0
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | pid: 3661681
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | pgrp: 3661681
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | corecount: 8
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | event service: False
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | sizes: {0: 2284265, 11: 2284555, 21: 2284555, 64543: 2339762, 64549: 2348756, 64551: 2348812, 64574: 2349186}
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | --------------------------------------------------
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | 
[2025-11-27 17:37:20] 2025-11-27 22:35:27,822 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 17:37:20] 2025-11-27 22:35:27,854 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,854 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,854 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,854 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,854 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,854 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,854 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,854 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,855 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,855 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,855 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,855 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,855 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,855 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,855 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,855 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,855 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,855 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:37:20] 2025-11-27 22:35:27,855 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,855 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:37:20] 2025-11-27 22:35:27,855 | INFO     | job 6897139679 has completed (purged errors)
[2025-11-27 17:37:20] 2025-11-27 22:35:27,855 | INFO     | overall cleanup function is called
[2025-11-27 17:37:20] 2025-11-27 22:35:28,870 | INFO     | --- collectZombieJob: --- 10, [3661681]
[2025-11-27 17:37:20] 2025-11-27 22:35:28,870 | INFO     | zombie collector waiting for pid 3661681
[2025-11-27 17:37:20] 2025-11-27 22:35:28,871 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:37:20] 2025-11-27 22:35:28,872 | INFO     | collected zombie processes
[2025-11-27 17:37:20] 2025-11-27 22:35:28,872 | INFO     | will attempt to kill all subprocesses of pid=3661681
[2025-11-27 17:37:20] 2025-11-27 22:35:29,408 | INFO     | process IDs to be killed: [3661681] (in reverse order)
[2025-11-27 17:37:20] 2025-11-27 22:35:29,549 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:37:20] 2025-11-27 22:35:29,549 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:37:20] 2025-11-27 22:35:29,638 | INFO     | did not find any defunct processes belonging to 3661681
[2025-11-27 17:37:20] 2025-11-27 22:35:29,745 | INFO     | did not find any defunct processes belonging to 3661681
[2025-11-27 17:37:20] 2025-11-27 22:35:29,747 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:37:20] 2025-11-27 22:35:29,748 | INFO     | ready for new job
[2025-11-27 17:37:20] 2025-11-27 22:35:29,748 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:37:20] 2025-11-27 22:35:29,751 | INFO     | ***************************************
[2025-11-27 17:37:20] 2025-11-27 22:35:29,751 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:37:20] 2025-11-27 22:35:29,751 | INFO     | ***************************************
[2025-11-27 17:37:20] 2025-11-27 22:35:29,751 | INFO     | 
[2025-11-27 17:37:20] 2025-11-27 22:35:29,756 | INFO     | architecture information:
[2025-11-27 17:37:20] 2025-11-27 22:35:29,769 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:37:20] 2025-11-27 22:35:29,831 | INFO     | cat /etc/os-release:
[2025-11-27 17:37:20] NAME="CentOS Linux"
[2025-11-27 17:37:20] VERSION="7 (Core)"
[2025-11-27 17:37:20] ID="centos"
[2025-11-27 17:37:20] ID_LIKE="rhel fedora"
[2025-11-27 17:37:20] VERSION_ID="7"
[2025-11-27 17:37:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:37:20] ANSI_COLOR="0;31"
[2025-11-27 17:37:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:37:20] HOME_URL="https://www.centos.org/"
[2025-11-27 17:37:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:37:20] 
[2025-11-27 17:37:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:37:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:37:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:37:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:37:20] 
[2025-11-27 17:37:20] 2025-11-27 22:35:29,831 | INFO     | ***************************************
[2025-11-27 17:37:20] 2025-11-27 22:35:30,335 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 17:37:20] 2025-11-27 22:35:30,422 | INFO     | sufficient remaining disk space (159828148224 B)
[2025-11-27 17:37:20] 2025-11-27 22:35:30,422 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:37:20] 2025-11-27 22:35:30,423 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:37:20] 2025-11-27 22:35:30,423 | INFO     | update_server=False
[2025-11-27 17:37:20] 2025-11-27 22:35:30,423 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:37:20] 2025-11-27 22:35:30,423 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:37:20] 2025-11-27 22:35:30,508 | INFO     | all job control threads have been joined
[2025-11-27 17:37:20] 2025-11-27 22:35:30,636 | INFO     | all data control threads have been joined
[2025-11-27 17:37:20] 2025-11-27 22:35:30,799 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:37:20] 2025-11-27 22:35:30,799 | INFO     | aborting loop
[2025-11-27 17:37:20] 2025-11-27 22:35:30,873 | INFO     | all payload control threads have been joined
[2025-11-27 17:37:20] 2025-11-27 22:35:31,320 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:37:20] 2025-11-27 22:35:31,429 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:37:20] 2025-11-27 22:35:31,514 | INFO     | [job] control thread has finished
[2025-11-27 17:37:20] 2025-11-27 22:35:31,641 | INFO     | [data] control thread has finished
[2025-11-27 17:37:20] 2025-11-27 22:35:31,804 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:37:20] 2025-11-27 22:35:31,804 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:37:20] 2025-11-27 22:35:31,879 | INFO     | [payload] control thread has finished
[2025-11-27 17:37:20] 2025-11-27 22:35:31,915 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:37:20] 2025-11-27 22:35:32,012 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:37:20] 2025-11-27 22:35:32,186 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:37:20] 2025-11-27 22:35:32,382 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:37:20] 2025-11-27 22:35:32,549 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:37:20] 2025-11-27 22:35:32,550 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:37:20] 2025-11-27 22:35:32,672 | INFO     | [job] validate thread has finished
[2025-11-27 17:37:20] 2025-11-27 22:35:32,853 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:37:20] 2025-11-27 22:35:32,865 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:37:20] 2025-11-27 22:35:33,326 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:37:20] 2025-11-27 22:35:33,859 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:37:20] 2025-11-27 22:35:34,433 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:37:20] 2025-11-27 22:35:34,924 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139796109166400)>', '<ExcThread(monitor, started 139795338618624)>']
[2025-11-27 17:37:20] 2025-11-27 22:35:39,950 | INFO     | all workflow threads have been joined
[2025-11-27 17:37:20] 2025-11-27 22:35:39,950 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:37:20] 2025-11-27 22:35:39,950 | INFO     | traces error code: 0
[2025-11-27 17:37:20] 2025-11-27 22:35:39,950 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:37:20] 2025-11-27 22:36:01,168 | INFO     | PID=3653617 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:37:20] 2025-11-27 22:36:01,168 | INFO     | .. there are 30 such processes running
[2025-11-27 17:37:20] 2025-11-27 22:36:01,169 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:37:20] 2025-11-27 22:36:01,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:37:20] 2025-11-27 22:36:01,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:37:20] 2025-11-27 22:36:01,169 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:37:20] 2025-11-27 22:36:01,169 | INFO     | [monitor] control thread has ended
[2025-11-27 17:37:20] 2025-11-27 22:36:01,428 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:37:20] 2025-11-27 22:36:01,432 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:37:20] 2025-11-27 22:36:01,433 [wrapper] pilotpid: 3653617
[2025-11-27 17:37:20] 2025-11-27 22:36:01,455 [wrapper] Pilot exit status: 0
[2025-11-27 17:37:20] 2025-11-27 22:36:01,604 [wrapper] pandaids: 6897139679
[2025-11-27 17:37:20] 2025-11-27 22:36:01,753 [wrapper] cleanup supervisor_pilot 1372510 3653618
[2025-11-27 17:37:20] 2025-11-27 22:36:01,756 [wrapper] Test setup, not cleaning
[2025-11-27 17:37:20] 2025-11-27 22:36:01,758 [wrapper] apfmon messages muted
[2025-11-27 17:37:20] 2025-11-27 22:36:01,767 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:37:20] 2025-11-27 22:36:01,814 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:37:20]  *** Error codes and diagnostics ***
[2025-11-27 17:37:20]     "exeErrorCode": 0,
[2025-11-27 17:37:20]     "exeErrorDiag": "",
[2025-11-27 17:37:20]     "pilotErrorCode": 0,
[2025-11-27 17:37:20]     "pilotErrorDiag": "",
[2025-11-27 17:37:20]  *** Listing of results directory ***
[2025-11-27 17:37:20] total 1316292
[2025-11-27 17:37:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 17:37:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 17:37:20] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-27 17:37:20] -rw-r--r--. 1 boincer umatlas       100 Nov 26 23:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:37:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 23:38 run_atlas
[2025-11-27 17:37:20] -rw-r--r--. 1 boincer umatlas       105 Nov 26 23:38 job.xml
[2025-11-27 17:37:20] -rw-r--r--. 2 boincer umatlas 411809887 Nov 26 23:38 EVNT.47483658._002194.pool.root.1
[2025-11-27 17:37:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 23:38 start_atlas.sh
[2025-11-27 17:37:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 23:38 shared
[2025-11-27 17:37:20] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 23:38 input.tar.gz
[2025-11-27 17:37:20] -rw-r--r--. 1 boincer umatlas         0 Nov 26 23:38 boinc_lockfile
[2025-11-27 17:37:20] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 23:38 pandaJob.out
[2025-11-27 17:37:20] -rw-------. 1 boincer umatlas        57 Nov 26 23:38 setup.sh.local
[2025-11-27 17:37:20] -rw-------. 1 boincer umatlas    991570 Nov 26 23:38 agis_schedconf.cvmfs.json
[2025-11-27 17:37:20] drwx------. 5 boincer umatlas      4096 Nov 26 23:38 pilot3
[2025-11-27 17:37:20] -rw-r--r--. 1 boincer umatlas       533 Nov 27 17:14 boinc_task_state.xml
[2025-11-27 17:37:20] -rw-r--r--. 1 boincer umatlas      7174 Nov 27 17:31 init_data.xml
[2025-11-27 17:37:20] -rw-------. 1 boincer umatlas 911071542 Nov 27 17:34 HITS.47556161._001777.pool.root.1
[2025-11-27 17:37:20] -rw-------. 1 boincer umatlas      1091 Nov 27 17:34 memory_monitor_summary.json
[2025-11-27 17:37:20] -rw-------. 1 boincer umatlas   1516240 Nov 27 17:35 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:37:20] -rw-------. 1 boincer umatlas   2189919 Nov 27 17:35 log.47556161._001777.job.log.tgz.1
[2025-11-27 17:37:20] -rw-------. 1 boincer umatlas        95 Nov 27 17:35 pilot_heartbeat.json
[2025-11-27 17:37:20] -rw-------. 1 boincer umatlas      8641 Nov 27 17:35 heartbeat.json
[2025-11-27 17:37:20] -rw-------. 1 boincer umatlas       823 Nov 27 17:36 pilotlog.txt
[2025-11-27 17:37:20] -rw-------. 1 boincer umatlas   8362517 Nov 27 17:36 log.47556161._001777.job.log.1
[2025-11-27 17:37:20] -rw-------. 1 boincer umatlas       353 Nov 27 17:36 output.list
[2025-11-27 17:37:20] -rw-r--r--. 1 boincer umatlas       620 Nov 27 17:36 runtime_log
[2025-11-27 17:37:20] -rw-------. 1 boincer umatlas  10567680 Nov 27 17:36 result.tar.gz
[2025-11-27 17:37:20] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 17:36 runtime_log.err
[2025-11-27 17:37:20] -rw-------. 1 boincer umatlas       666 Nov 27 17:36 C55MDmbWBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvXJKDmqdOy8n.diag
[2025-11-27 17:37:20] -rw-r--r--. 1 boincer umatlas        29 Nov 27 17:37 wrapper_checkpoint.txt
[2025-11-27 17:37:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 17:37 boinc_mmap_file
[2025-11-27 17:37:20] -rw-r--r--. 1 boincer umatlas      8240 Nov 27 17:37 stderr.txt
[2025-11-27 17:37:20] HITS file was successfully produced:
[2025-11-27 17:37:20] -rw-------. 1 boincer umatlas 911071542 Nov 27 17:34 shared/HITS.pool.root.1
[2025-11-27 17:37:20]  *** Contents of shared directory: ***
[2025-11-27 17:37:20] total 1302800
[2025-11-27 17:37:20] -rw-r--r--. 2 boincer umatlas 411809887 Nov 26 23:38 ATLAS.root_0
[2025-11-27 17:37:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 23:38 start_atlas.sh
[2025-11-27 17:37:20] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 23:38 input.tar.gz
[2025-11-27 17:37:20] -rw-------. 1 boincer umatlas 911071542 Nov 27 17:34 HITS.pool.root.1
[2025-11-27 17:37:20] -rw-------. 1 boincer umatlas  10567680 Nov 27 17:36 result.tar.gz
17:37:22 (3646069): run_atlas exited; CPU time 143830.852148
17:37:22 (3646069): called boinc_finish(0)

</stderr_txt>
]]>

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