Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:58:57 (7231): wrapper (7.7.26015): starting
06:58:57 (7231): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 06:58:57] Arguments: --nthreads 8
[2025-11-29 06:58:57] Threads: 8
[2025-11-29 06:58:57] Checking for CVMFS
[2025-11-29 06:58:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 06:58:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 06:58:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 06:59:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 06:59:00] 2.11.2.0 3740 289285 139992 153432 3 85 16501677 25165824 1920 130560 10 133800991 99.873 80937144 2826 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-29 06:59:00] CVMFS is ok
[2025-11-29 06:59:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 06:59:00] Checking for apptainer binary...
[2025-11-29 06:59:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 06:59:00] Running /usr/bin/apptainer --version
[2025-11-29 06:59:01] apptainer version 1.3.2-1.el7
[2025-11-29 06:59:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 06:59:37] cg-vwn234.simple-grid.lan
[2025-11-29 06:59:37] apptainer works
[2025-11-29 06:59:37] Set ATHENA_PROC_NUMBER=8
[2025-11-29 06:59:37] Set ATHENA_CORE_NUMBER=8
[2025-11-29 06:59:37] Starting ATLAS job with PandaID=6897488111
[2025-11-29 06:59:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 07:15:23]  *** The last 200 lines of the pilot log: ***
[2025-11-30 07:15:23] 2025-11-30 06:14:14,925 | INFO     | time since job start (87032s) is within the limit (172800.0s)
[2025-11-30 07:15:23] 2025-11-30 06:14:16,893 | INFO     | monitor loop #5864: job 0:6897488111 is in state 'finished'
[2025-11-30 07:15:23] 2025-11-30 06:14:16,893 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 07:15:23] 2025-11-30 06:14:16,931 | INFO     | time since job start (87034s) is within the limit (172800.0s)
[2025-11-30 07:15:23] 2025-11-30 06:14:18,942 | INFO     | time since job start (87036s) is within the limit (172800.0s)
[2025-11-30 07:15:23] 2025-11-30 06:14:19,405 | INFO     | monitor loop #5865: job 0:6897488111 is in state 'finished'
[2025-11-30 07:15:23] 2025-11-30 06:14:19,405 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 07:15:23] 2025-11-30 06:14:20,956 | INFO     | time since job start (87038s) is within the limit (172800.0s)
[2025-11-30 07:15:23] 2025-11-30 06:14:21,913 | INFO     | monitor loop #5866: job 0:6897488111 is in state 'finished'
[2025-11-30 07:15:23] 2025-11-30 06:14:21,913 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 07:15:23] 2025-11-30 06:14:22,141 | INFO     | PID=11085 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 07:15:23] 2025-11-30 06:14:22,149 | INFO     | .. there are 9 such processes running
[2025-11-30 07:15:23] 2025-11-30 06:14:23,151 | INFO     | time since job start (87041s) is within the limit (172800.0s)
[2025-11-30 07:15:23] 2025-11-30 06:14:24,375 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 07:15:23] 2025-11-30 06:14:24,376 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-30 07:15:23] 2025-11-30 06:14:24,378 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-6897488111/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 07:15:23] 2025-11-30 06:14:24,378 | INFO     | extracted standard info from prmon json
[2025-11-30 07:15:23] 2025-11-30 06:14:24,379 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 07:15:23] 2025-11-30 06:14:24,379 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 07:15:23] 2025-11-30 06:14:24,423 | INFO     | fitting pss+swap vs Time
[2025-11-30 07:15:23] 2025-11-30 06:14:24,425 | INFO     | sum of square deviations: 882238351578.1624
[2025-11-30 07:15:23] 2025-11-30 06:14:24,440 | INFO     | monitor loop #5867: job 0:6897488111 is in state 'finished'
[2025-11-30 07:15:23] 2025-11-30 06:14:24,440 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 07:15:23] 2025-11-30 06:14:24,533 | INFO     | sum of deviations: 3206728034810.1753
[2025-11-30 07:15:23] 2025-11-30 06:14:24,533 | INFO     | mean x: 1764439904.1023288
[2025-11-30 07:15:23] 2025-11-30 06:14:24,533 | INFO     | mean y: 2854799.067748765
[2025-11-30 07:15:23] 2025-11-30 06:14:24,533 | INFO     | intersect: -6410467514.682782
[2025-11-30 07:15:23] 2025-11-30 06:14:24,542 | INFO     | chi2: 19.568699335576373
[2025-11-30 07:15:23] 2025-11-30 06:14:24,544 | INFO     | sum of square deviations: 872932551167.0648
[2025-11-30 07:15:23] 2025-11-30 06:14:24,622 | INFO     | sum of deviations: 3681061386267.6606
[2025-11-30 07:15:23] 2025-11-30 06:14:24,622 | INFO     | mean x: 1764439751.6062324
[2025-11-30 07:15:23] 2025-11-30 06:14:24,622 | INFO     | mean y: 2862571.402266289
[2025-11-30 07:15:23] 2025-11-30 06:14:24,622 | INFO     | intersect: -7437587471.788261
[2025-11-30 07:15:23] 2025-11-30 06:14:24,624 | INFO     | chi2: 16.326733324352023
[2025-11-30 07:15:23] 2025-11-30 06:14:24,624 | INFO     | current chi2=16.326733324352023 (change=16.567100120601147 %)
[2025-11-30 07:15:23] 2025-11-30 06:14:24,624 | INFO     | right removable region: 1411
[2025-11-30 07:15:23] 2025-11-30 06:14:24,626 | INFO     | sum of square deviations: 872931598347.0651
[2025-11-30 07:15:23] 2025-11-30 06:14:24,699 | INFO     | sum of deviations: 2624161617800.494
[2025-11-30 07:15:23] 2025-11-30 06:14:24,700 | INFO     | mean x: 1764440056.6062324
[2025-11-30 07:15:23] 2025-11-30 06:14:24,700 | INFO     | mean y: 2864344.056657224
[2025-11-30 07:15:23] 2025-11-30 06:14:24,700 | INFO     | intersect: -5301303682.651565
[2025-11-30 07:15:23] 2025-11-30 06:14:24,702 | INFO     | chi2: 15.114716339110757
[2025-11-30 07:15:23] 2025-11-30 06:14:24,702 | INFO     | current chi2=15.114716339110757 (change=22.760751341138786 %)
[2025-11-30 07:15:23] 2025-11-30 06:14:24,702 | INFO     | left removable region: 10
[2025-11-30 07:15:23] 2025-11-30 06:14:24,704 | INFO     | sum of square deviations: 852688735462.4989
[2025-11-30 07:15:23] 2025-11-30 06:14:24,774 | INFO     | sum of deviations: 2708967118189.791
[2025-11-30 07:15:23] 2025-11-30 06:14:24,775 | INFO     | mean x: 1764440026.114918
[2025-11-30 07:15:23] 2025-11-30 06:14:24,775 | INFO     | mean y: 2882092.6845110636
[2025-11-30 07:15:23] 2025-11-30 06:14:24,775 | INFO     | intersect: -5602692150.26673
[2025-11-30 07:15:23] 2025-11-30 06:14:24,782 | INFO     | chi2: 7.9843558947490605
[2025-11-30 07:15:23] 2025-11-30 06:14:24,782 | INFO     | current memory leak: 3.18 B/s (using 1401 data points, chi2=7.98)
[2025-11-30 07:15:23] 2025-11-30 06:14:24,784 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-30 07:15:23] 2025-11-30 06:14:24,784 | INFO     | ..............................
[2025-11-30 07:15:23] 2025-11-30 06:14:24,784 | INFO     | . Timing measurements:
[2025-11-30 07:15:23] 2025-11-30 06:14:24,784 | INFO     | . get job = 0 s
[2025-11-30 07:15:23] 2025-11-30 06:14:24,784 | INFO     | . initial setup = 5 s
[2025-11-30 07:15:23] 2025-11-30 06:14:24,784 | INFO     | . payload setup = 159 s
[2025-11-30 07:15:23] 2025-11-30 06:14:24,784 | INFO     | . stage-in = 0 s
[2025-11-30 07:15:23] 2025-11-30 06:14:24,784 | INFO     | . payload execution = 86599 s
[2025-11-30 07:15:23] 2025-11-30 06:14:24,785 | INFO     | . stage-out = 7 s
[2025-11-30 07:15:23] 2025-11-30 06:14:24,785 | INFO     | . log creation = 2 s
[2025-11-30 07:15:23] 2025-11-30 06:14:24,785 | INFO     | ..............................
[2025-11-30 07:15:23] 2025-11-30 06:14:24,909 | INFO     | 
[2025-11-30 07:15:23] 2025-11-30 06:14:24,909 | INFO     | job summary report
[2025-11-30 07:15:23] 2025-11-30 06:14:24,909 | INFO     | --------------------------------------------------
[2025-11-30 07:15:23] 2025-11-30 06:14:24,909 | INFO     | PanDA job id: 6897488111
[2025-11-30 07:15:23] 2025-11-30 06:14:24,909 | INFO     | task id: 47556161
[2025-11-30 07:15:23] 2025-11-30 06:14:24,909 | INFO     | errors: (none)
[2025-11-30 07:15:23] 2025-11-30 06:14:24,910 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 07:15:23] 2025-11-30 06:14:24,910 | INFO     | pilot state: finished 
[2025-11-30 07:15:23] 2025-11-30 06:14:24,910 | INFO     | transexitcode: 0
[2025-11-30 07:15:23] 2025-11-30 06:14:24,910 | INFO     | exeerrorcode: 0
[2025-11-30 07:15:23] 2025-11-30 06:14:24,910 | INFO     | exeerrordiag: 
[2025-11-30 07:15:23] 2025-11-30 06:14:24,910 | INFO     | exitcode: 0
[2025-11-30 07:15:23] 2025-11-30 06:14:24,910 | INFO     | exitmsg: OK
[2025-11-30 07:15:23] 2025-11-30 06:14:24,910 | INFO     | cpuconsumptiontime: 325770 s
[2025-11-30 07:15:23] 2025-11-30 06:14:24,910 | INFO     | nevents: 1000
[2025-11-30 07:15:23] 2025-11-30 06:14:24,910 | INFO     | neventsw: 0
[2025-11-30 07:15:23] 2025-11-30 06:14:24,910 | INFO     | pid: 17619
[2025-11-30 07:15:23] 2025-11-30 06:14:24,911 | INFO     | pgrp: 17619
[2025-11-30 07:15:23] 2025-11-30 06:14:24,911 | INFO     | corecount: 8
[2025-11-30 07:15:23] 2025-11-30 06:14:24,911 | INFO     | event service: False
[2025-11-30 07:15:23] 2025-11-30 06:14:24,911 | INFO     | sizes: {0: 2284095, 1: 2284294, 12: 2284294, 23: 2284322, 33: 2284350, 44: 2284406, 55: 2284562, 66: 2284590, 76: 2284618, 80: 2284936, 87: 2284964, 86763: 2346429
[2025-11-30 07:15:23] 2025-11-30 06:14:24,911 | INFO     | --------------------------------------------------
[2025-11-30 07:15:23] 2025-11-30 06:14:24,911 | INFO     | 
[2025-11-30 07:15:23] 2025-11-30 06:14:24,911 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2025-11-30 07:15:23] 2025-11-30 06:14:25,158 | INFO     | time since job start (87043s) is within the limit (172800.0s)
[2025-11-30 07:15:23] 2025-11-30 06:14:25,580 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,580 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,581 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,581 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,581 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,581 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,581 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,581 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,581 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,581 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,582 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,582 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,582 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,582 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,582 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,582 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,582 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,582 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 07:15:23] 2025-11-30 06:14:25,583 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,583 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 07:15:23] 2025-11-30 06:14:25,583 | INFO     | job 6897488111 has completed (purged errors)
[2025-11-30 07:15:23] 2025-11-30 06:14:25,583 | INFO     | overall cleanup function is called
[2025-11-30 07:15:23] 2025-11-30 06:14:26,604 | INFO     | --- collectZombieJob: --- 10, [17619]
[2025-11-30 07:15:23] 2025-11-30 06:14:26,604 | INFO     | zombie collector waiting for pid 17619
[2025-11-30 07:15:23] 2025-11-30 06:14:26,604 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 07:15:23] 2025-11-30 06:14:26,604 | INFO     | collected zombie processes
[2025-11-30 07:15:23] 2025-11-30 06:14:26,604 | INFO     | will attempt to kill all subprocesses of pid=17619
[2025-11-30 07:15:23] 2025-11-30 06:14:26,727 | INFO     | process IDs to be killed: [17619] (in reverse order)
[2025-11-30 07:15:23] 2025-11-30 06:14:27,559 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 07:15:23] 2025-11-30 06:14:27,560 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 07:15:23] 2025-11-30 06:14:27,563 | INFO     | did not find any defunct processes belonging to 17619
[2025-11-30 07:15:23] 2025-11-30 06:14:27,566 | INFO     | did not find any defunct processes belonging to 17619
[2025-11-30 07:15:23] 2025-11-30 06:14:27,608 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 07:15:23] 2025-11-30 06:14:27,608 | INFO     | ready for new job
[2025-11-30 07:15:23] 2025-11-30 06:14:27,609 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 07:15:23] 2025-11-30 06:14:27,614 | INFO     | ***************************************
[2025-11-30 07:15:23] 2025-11-30 06:14:27,614 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 07:15:23] 2025-11-30 06:14:27,614 | INFO     | ***************************************
[2025-11-30 07:15:23] 2025-11-30 06:14:27,615 | INFO     | 
[2025-11-30 07:15:23] 2025-11-30 06:14:27,615 | INFO     | pilot is running in a VM
[2025-11-30 07:15:23] 2025-11-30 06:14:27,615 | INFO     | architecture information:
[2025-11-30 07:15:23] 2025-11-30 06:14:27,622 | INFO     | executing command: cat /etc/os-release
[2025-11-30 07:15:23] 2025-11-30 06:14:27,815 | INFO     | cat /etc/os-release:
[2025-11-30 07:15:23] NAME="CentOS Linux"
[2025-11-30 07:15:23] VERSION="7 (Core)"
[2025-11-30 07:15:23] ID="centos"
[2025-11-30 07:15:23] ID_LIKE="rhel fedora"
[2025-11-30 07:15:23] VERSION_ID="7"
[2025-11-30 07:15:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 07:15:23] ANSI_COLOR="0;31"
[2025-11-30 07:15:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 07:15:23] HOME_URL="https://www.centos.org/"
[2025-11-30 07:15:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 07:15:23] 
[2025-11-30 07:15:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 07:15:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 07:15:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 07:15:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 07:15:23] 
[2025-11-30 07:15:23] 2025-11-30 06:14:27,816 | INFO     | ***************************************
[2025-11-30 07:15:23] 2025-11-30 06:14:28,319 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2025-11-30 07:15:23] 2025-11-30 06:14:28,613 | INFO     | sufficient remaining disk space (488020901888 B)
[2025-11-30 07:15:23] 2025-11-30 06:14:28,614 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 07:15:23] 2025-11-30 06:14:28,614 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 07:15:23] 2025-11-30 06:14:28,614 | INFO     | update_server=False
[2025-11-30 07:15:23] 2025-11-30 06:14:28,614 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 07:15:23] 2025-11-30 06:14:28,615 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 07:15:23] 2025-11-30 06:14:28,615 | INFO     | aborting loop
[2025-11-30 07:15:23] 2025-11-30 06:14:28,949 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 07:15:23] 2025-11-30 06:14:29,107 | INFO     | all job control threads have been joined
[2025-11-30 07:15:23] 2025-11-30 06:14:29,207 | INFO     | all data control threads have been joined
[2025-11-30 07:15:23] 2025-11-30 06:14:29,377 | INFO     | all payload control threads have been joined
[2025-11-30 07:15:23] 2025-11-30 06:14:29,621 | INFO     | [job] retrieve thread has finished
[2025-11-30 07:15:23] 2025-11-30 06:14:29,624 | INFO     | [job] job monitor thread has finished
[2025-11-30 07:15:23] 2025-11-30 06:14:29,812 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 07:15:23] 2025-11-30 06:14:29,923 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 07:15:23] 2025-11-30 06:14:30,113 | INFO     | [job] control thread has finished
[2025-11-30 07:15:23] 2025-11-30 06:14:30,213 | INFO     | [data] control thread has finished
[2025-11-30 07:15:23] 2025-11-30 06:14:30,383 | INFO     | [payload] control thread has finished
[2025-11-30 07:15:23] 2025-11-30 06:14:30,417 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 07:15:23] 2025-11-30 06:14:30,494 | INFO     | [payload] validate_post thread has finished
[2025-11-30 07:15:23] 2025-11-30 06:14:30,657 | INFO     | [payload] failed_post thread has finished
[2025-11-30 07:15:23] 2025-11-30 06:14:30,663 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 07:15:23] 2025-11-30 06:14:30,929 | INFO     | [job] queue monitor thread has finished
[2025-11-30 07:15:23] 2025-11-30 06:14:30,934 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 07:15:23] 2025-11-30 06:14:30,956 | INFO     | [data] copytool_out thread has finished
[2025-11-30 07:15:23] 2025-11-30 06:14:30,975 | INFO     | [job] validate thread has finished
[2025-11-30 07:15:23] 2025-11-30 06:14:31,018 | INFO     | [data] copytool_in thread has finished
[2025-11-30 07:15:23] 2025-11-30 06:14:31,100 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 07:15:23] 2025-11-30 06:14:34,942 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 07:15:23] 2025-11-30 06:14:58,365 | INFO     | PID=11085 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 07:15:23] 2025-11-30 06:14:58,365 | INFO     | .. there are 9 such processes running
[2025-11-30 07:15:23] 2025-11-30 06:14:58,365 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 07:15:23] 2025-11-30 06:14:58,365 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 07:15:23] 2025-11-30 06:14:58,365 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 07:15:23] 2025-11-30 06:15:14,182 | INFO     | [monitor] cgroup control has ended
[2025-11-30 07:15:23] 2025-11-30 06:15:14,295 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140461233350464)>', '<ExcThread(monitor, started 140460655896320)>']
[2025-11-30 07:15:23] 2025-11-30 06:15:14,460 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 07:15:23] 2025-11-30 06:15:14,460 | INFO     | [monitor] control thread has ended
[2025-11-30 07:15:23] 2025-11-30 06:15:19,321 | INFO     | all workflow threads have been joined
[2025-11-30 07:15:23] 2025-11-30 06:15:19,321 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 07:15:23] 2025-11-30 06:15:19,321 | INFO     | traces error code: 0
[2025-11-30 07:15:23] 2025-11-30 06:15:19,321 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 07:15:23] 2025-11-30 06:15:19,711 [wrapper] ==== pilot stdout END ====
[2025-11-30 07:15:23] 2025-11-30 06:15:19,769 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 07:15:23] 2025-11-30 06:15:19,852 [wrapper] pilotpid: 11085
[2025-11-30 07:15:23] 2025-11-30 06:15:19,953 [wrapper] Pilot exit status: 0
[2025-11-30 07:15:23] 2025-11-30 06:15:20,332 [wrapper] pandaids: 6897488111
[2025-11-30 07:15:23] 2025-11-30 06:15:21,150 [wrapper] cleanup supervisor_pilot 22183 11086
[2025-11-30 07:15:23] 2025-11-30 06:15:21,209 [wrapper] Test setup, not cleaning
[2025-11-30 07:15:23] 2025-11-30 06:15:21,264 [wrapper] apfmon messages muted
[2025-11-30 07:15:23] 2025-11-30 06:15:21,329 [wrapper] ==== wrapper stdout END ====
[2025-11-30 07:15:23] 2025-11-30 06:15:21,463 [wrapper] ==== wrapper stderr END ====
[2025-11-30 07:15:23]  *** Error codes and diagnostics ***
[2025-11-30 07:15:23]     "exeErrorCode": 0,
[2025-11-30 07:15:23]     "exeErrorDiag": "",
[2025-11-30 07:15:23]     "pilotErrorCode": 0,
[2025-11-30 07:15:23]     "pilotErrorDiag": "",
[2025-11-30 07:15:23]  *** Listing of results directory ***
[2025-11-30 07:15:23] total 1342244
[2025-11-30 07:15:23] -rw-r--r--. 1 boinc boinc    598293 Nov  6 09:41 pilot3.tar.gz
[2025-11-30 07:15:23] -rw-r--r--. 1 boinc boinc      5112 Nov 25 17:55 queuedata.json
[2025-11-30 07:15:23] -rwx------. 1 boinc boinc     36292 Nov 25 17:57 runpilot2-wrapper.sh
[2025-11-30 07:15:23] -rw-r--r--. 1 boinc boinc       100 Nov 29 06:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 07:15:23] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 06:58 run_atlas
[2025-11-30 07:15:23] -rw-r--r--. 1 boinc boinc       105 Nov 29 06:58 job.xml
[2025-11-30 07:15:23] -rw-r--r--. 1 boinc boinc      6393 Nov 29 06:58 init_data.xml
[2025-11-30 07:15:23] -rw-r--r--. 2 boinc boinc 410770182 Nov 29 06:58 EVNT.47483658._002258.pool.root.1
[2025-11-30 07:15:23] -rw-r--r--. 2 boinc boinc     15847 Nov 29 06:58 start_atlas.sh
[2025-11-30 07:15:23] drwxrwx--x. 2 boinc boinc        68 Nov 29 06:58 shared
[2025-11-30 07:15:23] -rw-r--r--. 2 boinc boinc    611282 Nov 29 06:58 input.tar.gz
[2025-11-30 07:15:23] -rw-r--r--. 1 boinc boinc         0 Nov 29 06:58 boinc_lockfile
[2025-11-30 07:15:23] -rw-r--r--. 1 boinc boinc      2786 Nov 29 06:59 pandaJob.out
[2025-11-30 07:15:23] -rw-------. 1 boinc boinc    991826 Nov 29 07:03 agis_schedconf.cvmfs.json
[2025-11-30 07:15:23] drwx------. 7 boinc boinc      4096 Nov 29 07:03 pilot3
[2025-11-30 07:15:23] -rw-r--r--. 1 boinc boinc       533 Nov 30 06:51 boinc_task_state.xml
[2025-11-30 07:15:23] -rw-------. 1 boinc boinc 931529708 Nov 30 07:11 HITS.47556161._002412.pool.root.1
[2025-11-30 07:15:23] -rw-------. 1 boinc boinc      1033 Nov 30 07:12 memory_monitor_summary.json
[2025-11-30 07:15:23] -rw-------. 1 boinc boinc   1516240 Nov 30 07:12 agis_ddmendpoints.agis.ALL.json
[2025-11-30 07:15:23] -rw-------. 1 boinc boinc   2495858 Nov 30 07:12 log.47556161._002412.job.log.tgz.1
[2025-11-30 07:15:23] -rw-------. 1 boinc boinc        95 Nov 30 07:14 pilot_heartbeat.json
[2025-11-30 07:15:23] -rw-------. 1 boinc boinc      7936 Nov 30 07:14 heartbeat.json
[2025-11-30 07:15:23] -rw-r--r--. 1 boinc boinc      8192 Nov 30 07:15 boinc_mmap_file
[2025-11-30 07:15:23] -rw-r--r--. 1 boinc boinc        29 Nov 30 07:15 wrapper_checkpoint.txt
[2025-11-30 07:15:23] -rw-------. 1 boinc boinc      4885 Nov 30 07:15 pilotlog.txt
[2025-11-30 07:15:23] -rw-------. 1 boinc boinc  11608735 Nov 30 07:15 log.47556161._002412.job.log.1
[2025-11-30 07:15:23] -rw-------. 1 boinc boinc       353 Nov 30 07:15 output.list
[2025-11-30 07:15:23] -rw-r--r--. 1 boinc boinc       620 Nov 30 07:15 runtime_log
[2025-11-30 07:15:23] -rw-------. 1 boinc boinc  14120960 Nov 30 07:15 result.tar.gz
[2025-11-30 07:15:23] -rw-------. 1 boinc boinc       662 Nov 30 07:15 sleLDmMXBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxWMKDmaKscGm.diag
[2025-11-30 07:15:23] -rw-r--r--. 1 boinc boinc      8833 Nov 30 07:15 runtime_log.err
[2025-11-30 07:15:23] -rw-r--r--. 1 boinc boinc     21505 Nov 30 07:15 stderr.txt
[2025-11-30 07:15:23] HITS file was successfully produced:
[2025-11-30 07:15:23] -rw-------. 1 boinc boinc 931529708 Nov 30 07:11 shared/HITS.pool.root.1
[2025-11-30 07:15:23]  *** Contents of shared directory: ***
[2025-11-30 07:15:23] total 1325252
[2025-11-30 07:15:23] -rw-r--r--. 2 boinc boinc 410770182 Nov 29 06:58 ATLAS.root_0
[2025-11-30 07:15:23] -rw-r--r--. 2 boinc boinc     15847 Nov 29 06:58 start_atlas.sh
[2025-11-30 07:15:23] -rw-r--r--. 2 boinc boinc    611282 Nov 29 06:58 input.tar.gz
[2025-11-30 07:15:23] -rw-------. 1 boinc boinc 931529708 Nov 30 07:11 HITS.pool.root.1
[2025-11-30 07:15:23] -rw-------. 1 boinc boinc  14120960 Nov 30 07:15 result.tar.gz
07:15:25 (7231): run_atlas exited; CPU time 326399.576690
07:15:25 (7231): called boinc_finish(0)

</stderr_txt>
]]>

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