Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:32:38 (17458): wrapper (7.7.26015): starting
22:32:38 (17458): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 22:32:38] Arguments: --nthreads 8
[2025-11-28 22:32:38] Threads: 8
[2025-11-28 22:32:38] Checking for CVMFS
[2025-11-28 22:32:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 22:32:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 22:32:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 22:32:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 22:32:40] 2.11.2.0 13466 288774 138572 153419 1 85 18147782 25165824 1336 130560 11 141047303 99.866 88122870 3409 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 22:32:40] CVMFS is ok
[2025-11-28 22:32:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 22:32:40] Checking for apptainer binary...
[2025-11-28 22:32:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 22:32:40] Running /usr/bin/apptainer --version
[2025-11-28 22:32:40] apptainer version 1.3.2-1.el7
[2025-11-28 22:32:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 22:32:50] cg-vwn493.simple-grid.lan
[2025-11-28 22:32:50] apptainer works
[2025-11-28 22:32:50] Set ATHENA_PROC_NUMBER=8
[2025-11-28 22:32:50] Set ATHENA_CORE_NUMBER=8
[2025-11-28 22:32:50] Starting ATLAS job with PandaID=6898120340
[2025-11-28 22:32:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 20:16:31]  *** The last 200 lines of the pilot log: ***
[2025-11-29 20:16:31] 2025-11-29 19:15:34,111 | INFO     | .. there are 9 such processes running
[2025-11-29 20:16:31] 2025-11-29 19:15:35,112 | INFO     | time since job start (77909s) is within the limit (172800.0s)
[2025-11-29 20:16:31] 2025-11-29 19:15:36,248 | INFO     | monitor loop #5277: job 0:6898120340 is in state 'finished'
[2025-11-29 20:16:31] 2025-11-29 19:15:36,248 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 20:16:31] 2025-11-29 19:15:37,120 | INFO     | time since job start (77911s) is within the limit (172800.0s)
[2025-11-29 20:16:31] 2025-11-29 19:15:38,759 | INFO     | monitor loop #5278: job 0:6898120340 is in state 'finished'
[2025-11-29 20:16:31] 2025-11-29 19:15:38,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 20:16:31] 2025-11-29 19:15:39,130 | INFO     | time since job start (77913s) is within the limit (172800.0s)
[2025-11-29 20:16:31] 2025-11-29 19:15:41,139 | INFO     | time since job start (77915s) is within the limit (172800.0s)
[2025-11-29 20:16:31] 2025-11-29 19:15:41,264 | INFO     | monitor loop #5279: job 0:6898120340 is in state 'finished'
[2025-11-29 20:16:31] 2025-11-29 19:15:41,264 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 20:16:31] 2025-11-29 19:15:43,146 | INFO     | time since job start (77917s) is within the limit (172800.0s)
[2025-11-29 20:16:31] 2025-11-29 19:15:43,768 | INFO     | monitor loop #5280: job 0:6898120340 is in state 'finished'
[2025-11-29 20:16:31] 2025-11-29 19:15:43,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 20:16:31] 2025-11-29 19:15:44,107 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 20:16:31] 2025-11-29 19:15:44,108 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-29 20:16:31] 2025-11-29 19:15:44,110 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6898120340/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 20:16:31] 2025-11-29 19:15:44,111 | INFO     | extracted standard info from prmon json
[2025-11-29 20:16:31] 2025-11-29 19:15:44,111 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 20:16:31] 2025-11-29 19:15:44,111 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 20:16:31] 2025-11-29 19:15:44,150 | INFO     | fitting pss+swap vs Time
[2025-11-29 20:16:31] 2025-11-29 19:15:44,155 | INFO     | sum of square deviations: 632172178226.2551
[2025-11-29 20:16:31] 2025-11-29 19:15:44,233 | INFO     | sum of deviations: 2046855193891.6775
[2025-11-29 20:16:31] 2025-11-29 19:15:44,234 | INFO     | mean x: 1764404965.54653
[2025-11-29 20:16:31] 2025-11-29 19:15:44,234 | INFO     | mean y: 2843356.437697161
[2025-11-29 20:16:31] 2025-11-29 19:15:44,234 | INFO     | intersect: -5709969690.777151
[2025-11-29 20:16:31] 2025-11-29 19:15:44,236 | INFO     | chi2: 22.32530574525198
[2025-11-29 20:16:31] 2025-11-29 19:15:44,237 | INFO     | sum of square deviations: 624723643290.7571
[2025-11-29 20:16:31] 2025-11-29 19:15:44,302 | INFO     | sum of deviations: 2468781005907.7344
[2025-11-29 20:16:31] 2025-11-29 19:15:44,302 | INFO     | mean x: 1764404813.050673
[2025-11-29 20:16:31] 2025-11-29 19:15:44,302 | INFO     | mean y: 2851993.8479809975
[2025-11-29 20:16:31] 2025-11-29 19:15:44,303 | INFO     | intersect: -6969717615.086068
[2025-11-29 20:16:31] 2025-11-29 19:15:44,304 | INFO     | chi2: 19.02141755609916
[2025-11-29 20:16:31] 2025-11-29 19:15:44,304 | INFO     | current chi2=19.02141755609916 (change=14.798848566073833 %)
[2025-11-29 20:16:31] 2025-11-29 19:15:44,304 | INFO     | right removable region: 1262
[2025-11-29 20:16:31] 2025-11-29 19:15:44,306 | INFO     | sum of square deviations: 624722833820.7563
[2025-11-29 20:16:31] 2025-11-29 19:15:44,345 | INFO     | sum of deviations: 1509682194588.2988
[2025-11-29 20:16:31] 2025-11-29 19:15:44,345 | INFO     | mean x: 1764405118.050673
[2025-11-29 20:16:31] 2025-11-29 19:15:44,345 | INFO     | mean y: 2854352.9485352337
[2025-11-29 20:16:31] 2025-11-29 19:15:44,346 | INFO     | intersect: -4260942080.5364375
[2025-11-29 20:16:31] 2025-11-29 19:15:44,347 | INFO     | chi2: 17.609854276173284
[2025-11-29 20:16:31] 2025-11-29 19:15:44,347 | INFO     | current chi2=17.609854276173284 (change=21.121553822758074 %)
[2025-11-29 20:16:31] 2025-11-29 19:15:44,347 | INFO     | left removable region: 10
[2025-11-29 20:16:31] 2025-11-29 19:15:44,349 | INFO     | sum of square deviations: 608541703456.5085
[2025-11-29 20:16:31] 2025-11-29 19:15:44,398 | INFO     | sum of deviations: 1625346199658.3655
[2025-11-29 20:16:31] 2025-11-29 19:15:44,399 | INFO     | mean x: 1764405087.559904
[2025-11-29 20:16:31] 2025-11-29 19:15:44,399 | INFO     | mean y: 2873599.728434505
[2025-11-29 20:16:31] 2025-11-29 19:15:44,399 | INFO     | intersect: -4709653228.645835
[2025-11-29 20:16:31] 2025-11-29 19:15:44,400 | INFO     | chi2: 10.726640140264484
[2025-11-29 20:16:31] 2025-11-29 19:15:44,401 | INFO     | current memory leak: 2.67 B/s (using 1252 data points, chi2=10.73)
[2025-11-29 20:16:31] 2025-11-29 19:15:44,402 | INFO     | could have reported an average CPU frequency of 2249 MHz (43 samples)
[2025-11-29 20:16:31] 2025-11-29 19:15:44,402 | INFO     | ..............................
[2025-11-29 20:16:31] 2025-11-29 19:15:44,402 | INFO     | . Timing measurements:
[2025-11-29 20:16:31] 2025-11-29 19:15:44,402 | INFO     | . get job = 0 s
[2025-11-29 20:16:31] 2025-11-29 19:15:44,402 | INFO     | . initial setup = 8 s
[2025-11-29 20:16:31] 2025-11-29 19:15:44,402 | INFO     | . payload setup = 149 s
[2025-11-29 20:16:31] 2025-11-29 19:15:44,402 | INFO     | . stage-in = 0 s
[2025-11-29 20:16:31] 2025-11-29 19:15:44,402 | INFO     | . payload execution = 77469 s
[2025-11-29 20:16:31] 2025-11-29 19:15:44,402 | INFO     | . stage-out = 4 s
[2025-11-29 20:16:31] 2025-11-29 19:15:44,403 | INFO     | . log creation = 2 s
[2025-11-29 20:16:31] 2025-11-29 19:15:44,403 | INFO     | ..............................
[2025-11-29 20:16:31] 2025-11-29 19:15:44,505 | INFO     | 
[2025-11-29 20:16:31] 2025-11-29 19:15:44,505 | INFO     | job summary report
[2025-11-29 20:16:31] 2025-11-29 19:15:44,505 | INFO     | --------------------------------------------------
[2025-11-29 20:16:31] 2025-11-29 19:15:44,505 | INFO     | PanDA job id: 6898120340
[2025-11-29 20:16:31] 2025-11-29 19:15:44,505 | INFO     | task id: 47556161
[2025-11-29 20:16:31] 2025-11-29 19:15:44,505 | INFO     | errors: (none)
[2025-11-29 20:16:31] 2025-11-29 19:15:44,506 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 20:16:31] 2025-11-29 19:15:44,506 | INFO     | pilot state: finished 
[2025-11-29 20:16:31] 2025-11-29 19:15:44,506 | INFO     | transexitcode: 0
[2025-11-29 20:16:31] 2025-11-29 19:15:44,506 | INFO     | exeerrorcode: 0
[2025-11-29 20:16:31] 2025-11-29 19:15:44,506 | INFO     | exeerrordiag: 
[2025-11-29 20:16:31] 2025-11-29 19:15:44,506 | INFO     | exitcode: 0
[2025-11-29 20:16:31] 2025-11-29 19:15:44,506 | INFO     | exitmsg: OK
[2025-11-29 20:16:31] 2025-11-29 19:15:44,506 | INFO     | cpuconsumptiontime: 291759 s
[2025-11-29 20:16:31] 2025-11-29 19:15:44,506 | INFO     | nevents: 1000
[2025-11-29 20:16:31] 2025-11-29 19:15:44,506 | INFO     | neventsw: 0
[2025-11-29 20:16:31] 2025-11-29 19:15:44,506 | INFO     | pid: 27822
[2025-11-29 20:16:31] 2025-11-29 19:15:44,506 | INFO     | pgrp: 27822
[2025-11-29 20:16:31] 2025-11-29 19:15:44,506 | INFO     | corecount: 8
[2025-11-29 20:16:31] 2025-11-29 19:15:44,507 | INFO     | event service: False
[2025-11-29 20:16:31] 2025-11-29 19:15:44,507 | INFO     | sizes: {0: 2284037, 1: 2284292, 2: 2284320, 13: 2284320, 23: 2284376, 34: 2284404, 45: 2284560, 55: 2284588, 66: 2284616, 77: 2284644, 87: 2284700, 97: 2285270, 98
[2025-11-29 20:16:31] 2025-11-29 19:15:44,507 | INFO     | --------------------------------------------------
[2025-11-29 20:16:31] 2025-11-29 19:15:44,507 | INFO     | 
[2025-11-29 20:16:31] 2025-11-29 19:15:44,507 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-29 20:16:31] 2025-11-29 19:15:45,167 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,168 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,168 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,168 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,168 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,168 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,168 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,168 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,168 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,168 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,169 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,169 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,169 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,169 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,169 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,169 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,169 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,169 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 20:16:31] 2025-11-29 19:15:45,169 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,169 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 20:16:31] 2025-11-29 19:15:45,170 | INFO     | job 6898120340 has completed (purged errors)
[2025-11-29 20:16:31] 2025-11-29 19:15:45,170 | INFO     | overall cleanup function is called
[2025-11-29 20:16:31] 2025-11-29 19:15:46,192 | INFO     | --- collectZombieJob: --- 10, [27822]
[2025-11-29 20:16:31] 2025-11-29 19:15:46,192 | INFO     | zombie collector waiting for pid 27822
[2025-11-29 20:16:31] 2025-11-29 19:15:46,192 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 20:16:31] 2025-11-29 19:15:46,192 | INFO     | collected zombie processes
[2025-11-29 20:16:31] 2025-11-29 19:15:46,192 | INFO     | will attempt to kill all subprocesses of pid=27822
[2025-11-29 20:16:31] 2025-11-29 19:15:46,318 | INFO     | process IDs to be killed: [27822] (in reverse order)
[2025-11-29 20:16:31] 2025-11-29 19:15:47,197 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 20:16:31] 2025-11-29 19:15:47,198 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 20:16:31] 2025-11-29 19:15:47,201 | INFO     | did not find any defunct processes belonging to 27822
[2025-11-29 20:16:31] 2025-11-29 19:15:47,203 | INFO     | did not find any defunct processes belonging to 27822
[2025-11-29 20:16:31] 2025-11-29 19:15:47,276 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 20:16:31] 2025-11-29 19:15:47,276 | INFO     | ready for new job
[2025-11-29 20:16:31] 2025-11-29 19:15:47,276 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 20:16:31] 2025-11-29 19:15:47,281 | INFO     | ***************************************
[2025-11-29 20:16:31] 2025-11-29 19:15:47,281 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 20:16:31] 2025-11-29 19:15:47,281 | INFO     | ***************************************
[2025-11-29 20:16:31] 2025-11-29 19:15:47,281 | INFO     | 
[2025-11-29 20:16:31] 2025-11-29 19:15:47,282 | INFO     | pilot is running in a VM
[2025-11-29 20:16:31] 2025-11-29 19:15:47,282 | INFO     | architecture information:
[2025-11-29 20:16:31] 2025-11-29 19:15:47,294 | INFO     | executing command: cat /etc/os-release
[2025-11-29 20:16:31] 2025-11-29 19:15:47,562 | INFO     | cat /etc/os-release:
[2025-11-29 20:16:31] NAME="CentOS Linux"
[2025-11-29 20:16:31] VERSION="7 (Core)"
[2025-11-29 20:16:31] ID="centos"
[2025-11-29 20:16:31] ID_LIKE="rhel fedora"
[2025-11-29 20:16:31] VERSION_ID="7"
[2025-11-29 20:16:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 20:16:31] ANSI_COLOR="0;31"
[2025-11-29 20:16:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 20:16:31] HOME_URL="https://www.centos.org/"
[2025-11-29 20:16:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 20:16:31] 
[2025-11-29 20:16:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 20:16:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 20:16:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 20:16:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 20:16:31] 
[2025-11-29 20:16:31] 2025-11-29 19:15:47,562 | INFO     | ***************************************
[2025-11-29 20:16:31] 2025-11-29 19:15:48,066 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-29 20:16:31] 2025-11-29 19:15:48,303 | INFO     | sufficient remaining disk space (489087303680 B)
[2025-11-29 20:16:31] 2025-11-29 19:15:48,304 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 20:16:31] 2025-11-29 19:15:48,304 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 20:16:31] 2025-11-29 19:15:48,304 | INFO     | update_server=False
[2025-11-29 20:16:31] 2025-11-29 19:15:48,304 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 20:16:31] 2025-11-29 19:15:48,345 | INFO     | all payload control threads have been joined
[2025-11-29 20:16:31] 2025-11-29 19:15:48,361 | INFO     | all data control threads have been joined
[2025-11-29 20:16:31] 2025-11-29 19:15:48,538 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 20:16:31] 2025-11-29 19:15:48,566 | INFO     | all job control threads have been joined
[2025-11-29 20:16:31] 2025-11-29 19:15:48,796 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-29 20:16:31] 2025-11-29 19:15:48,796 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-29 20:16:31] 2025-11-29 19:15:48,796 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 20:16:31] 2025-11-29 19:15:48,796 | INFO     | will abort loop
[2025-11-29 20:16:31] 2025-11-29 19:15:49,310 | INFO     | [job] retrieve thread has finished
[2025-11-29 20:16:31] 2025-11-29 19:15:49,351 | INFO     | [payload] control thread has finished
[2025-11-29 20:16:31] 2025-11-29 19:15:49,367 | INFO     | [data] control thread has finished
[2025-11-29 20:16:31] 2025-11-29 19:15:49,519 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 20:16:31] 2025-11-29 19:15:49,572 | INFO     | [job] control thread has finished
[2025-11-29 20:16:31] 2025-11-29 19:15:49,684 | INFO     | [job] validate thread has finished
[2025-11-29 20:16:31] 2025-11-29 19:15:49,802 | INFO     | [job] job monitor thread has finished
[2025-11-29 20:16:31] 2025-11-29 19:15:49,854 | INFO     | [payload] failed_post thread has finished
[2025-11-29 20:16:31] 2025-11-29 19:15:49,899 | INFO     | [data] copytool_in thread has finished
[2025-11-29 20:16:31] 2025-11-29 19:15:50,022 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 20:16:31] 2025-11-29 19:15:50,115 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 20:16:31] 2025-11-29 19:15:50,159 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 20:16:31] 2025-11-29 19:15:50,388 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 20:16:31] 2025-11-29 19:15:50,525 | INFO     | [job] queue monitor thread has finished
[2025-11-29 20:16:31] 2025-11-29 19:15:50,528 | INFO     | [payload] validate_post thread has finished
[2025-11-29 20:16:31] 2025-11-29 19:15:50,545 | INFO     | [data] copytool_out thread has finished
[2025-11-29 20:16:31] 2025-11-29 19:15:50,779 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 20:16:31] 2025-11-29 19:15:54,123 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 20:16:31] 2025-11-29 19:16:16,358 | INFO     | PID=21243 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 20:16:31] 2025-11-29 19:16:16,358 | INFO     | .. there are 9 such processes running
[2025-11-29 20:16:31] 2025-11-29 19:16:16,359 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 20:16:31] 2025-11-29 19:16:16,359 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 20:16:31] 2025-11-29 19:16:16,359 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 20:16:31] 2025-11-29 19:16:21,493 | INFO     | [monitor] cgroup control has ended
[2025-11-29 20:16:31] 2025-11-29 19:16:21,902 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139755973662528)>', '<ExcThread(monitor, started 139755408844544)>']
[2025-11-29 20:16:31] 2025-11-29 19:16:22,396 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 20:16:31] 2025-11-29 19:16:22,396 | INFO     | [monitor] control thread has ended
[2025-11-29 20:16:31] 2025-11-29 19:16:26,928 | INFO     | all workflow threads have been joined
[2025-11-29 20:16:31] 2025-11-29 19:16:26,928 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 20:16:31] 2025-11-29 19:16:26,928 | INFO     | traces error code: 0
[2025-11-29 20:16:31] 2025-11-29 19:16:26,928 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 20:16:31] 2025-11-29 19:16:27,176 [wrapper] ==== pilot stdout END ====
[2025-11-29 20:16:31] 2025-11-29 19:16:27,287 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 20:16:31] 2025-11-29 19:16:27,373 [wrapper] pilotpid: 21243
[2025-11-29 20:16:31] 2025-11-29 19:16:27,471 [wrapper] Pilot exit status: 0
[2025-11-29 20:16:31] 2025-11-29 19:16:27,892 [wrapper] pandaids: 6898120340
[2025-11-29 20:16:31] 2025-11-29 19:16:28,777 [wrapper] cleanup supervisor_pilot 14741 21244
[2025-11-29 20:16:31] 2025-11-29 19:16:28,869 [wrapper] Test setup, not cleaning
[2025-11-29 20:16:31] 2025-11-29 19:16:28,963 [wrapper] apfmon messages muted
[2025-11-29 20:16:31] 2025-11-29 19:16:29,077 [wrapper] ==== wrapper stdout END ====
[2025-11-29 20:16:31] 2025-11-29 19:16:29,225 [wrapper] ==== wrapper stderr END ====
[2025-11-29 20:16:31]  *** Error codes and diagnostics ***
[2025-11-29 20:16:31]     "exeErrorCode": 0,
[2025-11-29 20:16:31]     "exeErrorDiag": "",
[2025-11-29 20:16:31]     "pilotErrorCode": 0,
[2025-11-29 20:16:31]     "pilotErrorDiag": "",
[2025-11-29 20:16:31]  *** Listing of results directory ***
[2025-11-29 20:16:31] total 1339408
[2025-11-29 20:16:31] -rw-r--r--. 1 boinc boinc    576529 Nov 26 03:38 pilot3.tar.gz
[2025-11-29 20:16:31] -rw-r--r--. 1 boinc boinc      5112 Nov 26 04:26 queuedata.json
[2025-11-29 20:16:31] -rwx------. 1 boinc boinc     36292 Nov 26 04:27 runpilot2-wrapper.sh
[2025-11-29 20:16:31] -rw-r--r--. 1 boinc boinc       100 Nov 28 22:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 20:16:31] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 22:32 run_atlas
[2025-11-29 20:16:31] -rw-r--r--. 1 boinc boinc       105 Nov 28 22:32 job.xml
[2025-11-29 20:16:31] -rw-r--r--. 2 boinc boinc 411311522 Nov 28 22:32 EVNT.47483658._002422.pool.root.1
[2025-11-29 20:16:31] -rw-r--r--. 2 boinc boinc     15847 Nov 28 22:32 start_atlas.sh
[2025-11-29 20:16:31] drwxrwx--x. 2 boinc boinc        68 Nov 28 22:32 shared
[2025-11-29 20:16:31] -rw-r--r--. 2 boinc boinc    590109 Nov 28 22:32 input.tar.gz
[2025-11-29 20:16:31] -rw-r--r--. 1 boinc boinc      6391 Nov 28 22:32 init_data.xml
[2025-11-29 20:16:31] -rw-r--r--. 1 boinc boinc         0 Nov 28 22:32 boinc_lockfile
[2025-11-29 20:16:31] -rw-r--r--. 1 boinc boinc      2785 Nov 28 22:32 pandaJob.out
[2025-11-29 20:16:31] -rw-------. 1 boinc boinc    991818 Nov 28 22:37 agis_schedconf.cvmfs.json
[2025-11-29 20:16:31] drwx------. 5 boinc boinc      4096 Nov 28 22:37 pilot3
[2025-11-29 20:16:31] -rw-r--r--. 1 boinc boinc       533 Nov 29 19:50 boinc_task_state.xml
[2025-11-29 20:16:31] -rw-------. 1 boinc boinc 930819795 Nov 29 20:12 HITS.47556161._004050.pool.root.1
[2025-11-29 20:16:31] -rw-------. 1 boinc boinc      1031 Nov 29 20:13 memory_monitor_summary.json
[2025-11-29 20:16:31] -rw-------. 1 boinc boinc   1516240 Nov 29 20:13 agis_ddmendpoints.agis.ALL.json
[2025-11-29 20:16:31] -rw-------. 1 boinc boinc   2373655 Nov 29 20:13 log.47556161._004050.job.log.tgz.1
[2025-11-29 20:16:31] -rw-------. 1 boinc boinc      7939 Nov 29 20:15 heartbeat.json
[2025-11-29 20:16:31] -rw-r--r--. 1 boinc boinc      8192 Nov 29 20:15 boinc_mmap_file
[2025-11-29 20:16:31] -rw-r--r--. 1 boinc boinc        29 Nov 29 20:15 wrapper_checkpoint.txt
[2025-11-29 20:16:31] -rw-------. 1 boinc boinc        95 Nov 29 20:16 pilot_heartbeat.json
[2025-11-29 20:16:31] -rw-------. 1 boinc boinc      5070 Nov 29 20:16 pilotlog.txt
[2025-11-29 20:16:31] -rw-------. 1 boinc boinc  10390876 Nov 29 20:16 log.47556161._004050.job.log.1
[2025-11-29 20:16:31] -rw-------. 1 boinc boinc       353 Nov 29 20:16 output.list
[2025-11-29 20:16:31] -rw-r--r--. 1 boinc boinc       620 Nov 29 20:16 runtime_log
[2025-11-29 20:16:31] -rw-------. 1 boinc boinc  12779520 Nov 29 20:16 result.tar.gz
[2025-11-29 20:16:31] -rw-r--r--. 1 boinc boinc      8817 Nov 29 20:16 runtime_log.err
[2025-11-29 20:16:31] -rw-------. 1 boinc boinc       662 Nov 29 20:16 LyaLDmiMLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmboMKDm9WzBMm.diag
[2025-11-29 20:16:31] -rw-r--r--. 1 boinc boinc     21389 Nov 29 20:16 stderr.txt
[2025-11-29 20:16:31] HITS file was successfully produced:
[2025-11-29 20:16:31] -rw-------. 1 boinc boinc 930819795 Nov 29 20:12 shared/HITS.pool.root.1
[2025-11-29 20:16:31]  *** Contents of shared directory: ***
[2025-11-29 20:16:31] total 1323752
[2025-11-29 20:16:31] -rw-r--r--. 2 boinc boinc 411311522 Nov 28 22:32 ATLAS.root_0
[2025-11-29 20:16:31] -rw-r--r--. 2 boinc boinc     15847 Nov 28 22:32 start_atlas.sh
[2025-11-29 20:16:31] -rw-r--r--. 2 boinc boinc    590109 Nov 28 22:32 input.tar.gz
[2025-11-29 20:16:31] -rw-------. 1 boinc boinc 930819795 Nov 29 20:12 HITS.pool.root.1
[2025-11-29 20:16:31] -rw-------. 1 boinc boinc  12779520 Nov 29 20:16 result.tar.gz
20:16:33 (17458): run_atlas exited; CPU time 292248.252174
20:16:33 (17458): called boinc_finish(0)

</stderr_txt>
]]>

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