Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:39 (3307114): wrapper (7.7.26015): starting
00:00:39 (3307114): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:00:39] Arguments: --nthreads 9
[2025-11-27 00:00:39] Threads: 9
[2025-11-27 00:00:39] Checking for CVMFS
[2025-11-27 00:00:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:00:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:00:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:00:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:00:40] 2.13.3.0 11285 30997 349008 153347 2 658 23702111 32935936 57655 16776704 0 227712388 99.608 240268894 37840 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:00:40] CVMFS is ok
[2025-11-27 00:00:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:00:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:00:40] Further information can be found at the LHC@home message board.
[2025-11-27 00:00:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:00:40] Checking for apptainer binary...
[2025-11-27 00:00:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:00:40] Running /usr/bin/apptainer --version
[2025-11-27 00:00:40] apptainer version 1.4.4-1.el9
[2025-11-27 00:00:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:00:41] c7-3-29.aglt2.org
[2025-11-27 00:00:41] apptainer works
[2025-11-27 00:00:41] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:00:41] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:00:41] Starting ATLAS job with PandaID=6898719632
[2025-11-27 00:00:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:27:12]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:27:12] 2025-11-27 22:25:50,150 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 17:27:12] 2025-11-27 22:25:50,155 | INFO     | executing command: lscpu
[2025-11-27 17:27:12] 2025-11-27 22:25:50,285 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 17:27:12] 2025-11-27 22:25:50,536 | INFO     | time since job start (62676s) is within the limit (172800.0s)
[2025-11-27 17:27:12] 2025-11-27 22:25:51,979 | INFO     | monitor loop #3591: job 0:6898719632 is in state 'finished'
[2025-11-27 17:27:12] 2025-11-27 22:25:51,980 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:27:12] 2025-11-27 22:25:52,543 | INFO     | time since job start (62678s) is within the limit (172800.0s)
[2025-11-27 17:27:12] 2025-11-27 22:25:54,484 | INFO     | monitor loop #3592: job 0:6898719632 is in state 'finished'
[2025-11-27 17:27:12] 2025-11-27 22:25:54,484 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:27:12] 2025-11-27 22:25:54,549 | INFO     | time since job start (62680s) is within the limit (172800.0s)
[2025-11-27 17:27:12] 2025-11-27 22:25:56,561 | INFO     | time since job start (62682s) is within the limit (172800.0s)
[2025-11-27 17:27:12] 2025-11-27 22:25:56,990 | INFO     | monitor loop #3593: job 0:6898719632 is in state 'finished'
[2025-11-27 17:27:12] 2025-11-27 22:25:56,990 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:27:12] 2025-11-27 22:25:58,587 | INFO     | time since job start (62684s) is within the limit (172800.0s)
[2025-11-27 17:27:12] 2025-11-27 22:25:59,494 | INFO     | monitor loop #3594: job 0:6898719632 is in state 'finished'
[2025-11-27 17:27:12] 2025-11-27 22:25:59,495 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:27:12] 2025-11-27 22:26:00,596 | INFO     | time since job start (62686s) is within the limit (172800.0s)
[2025-11-27 17:27:12] 2025-11-27 22:26:00,820 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 17:27:12] 2025-11-27 22:26:00,851 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3068.0478020833325
[2025-11-27 17:27:12] 2025-11-27 22:26:00,898 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6898719632/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:27:12] 2025-11-27 22:26:00,899 | INFO     | extracted standard info from prmon json
[2025-11-27 17:27:12] 2025-11-27 22:26:00,899 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:27:12] 2025-11-27 22:26:00,899 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:27:12] 2025-11-27 22:26:00,925 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:27:12] 2025-11-27 22:26:00,927 | INFO     | sum of square deviations: 334921377606.59247
[2025-11-27 17:27:12] 2025-11-27 22:26:00,949 | INFO     | sum of deviations: 1840129470214.8542
[2025-11-27 17:27:12] 2025-11-27 22:26:00,950 | INFO     | mean x: 1764251004.0370371
[2025-11-27 17:27:12] 2025-11-27 22:26:00,950 | INFO     | mean y: 2986649.9512670566
[2025-11-27 17:27:12] 2025-11-27 22:26:00,950 | INFO     | intersect: -9690184590.966248
[2025-11-27 17:27:12] 2025-11-27 22:26:00,951 | INFO     | chi2: 15.838122800009566
[2025-11-27 17:27:12] 2025-11-27 22:26:00,952 | INFO     | sum of square deviations: 330049423037.22156
[2025-11-27 17:27:12] 2025-11-27 22:26:01,007 | INFO     | sum of deviations: 2192986994125.5764
[2025-11-27 17:27:12] 2025-11-27 22:26:01,007 | INFO     | mean x: 1764250851.5445642
[2025-11-27 17:27:12] 2025-11-27 22:26:01,008 | INFO     | mean y: 2997691.635651322
[2025-11-27 17:27:12] 2025-11-27 22:26:01,008 | INFO     | intersect: -11719425987.244331
[2025-11-27 17:27:12] 2025-11-27 22:26:01,009 | INFO     | chi2: 12.624009438155207
[2025-11-27 17:27:12] 2025-11-27 22:26:01,009 | INFO     | current chi2=12.624009438155207 (change=20.293524696325864 %)
[2025-11-27 17:27:12] 2025-11-27 22:26:01,009 | INFO     | right removable region: 1020
[2025-11-27 17:27:12] 2025-11-27 22:26:01,010 | INFO     | sum of square deviations: 330048461067.22235
[2025-11-27 17:27:12] 2025-11-27 22:26:01,030 | INFO     | sum of deviations: 1435427145309.5176
[2025-11-27 17:27:12] 2025-11-27 22:26:01,030 | INFO     | mean x: 1764251156.5445642
[2025-11-27 17:27:12] 2025-11-27 22:26:01,030 | INFO     | mean y: 2999313.571008815
[2025-11-27 17:27:12] 2025-11-27 22:26:01,030 | INFO     | intersect: -7669976930.762951
[2025-11-27 17:27:12] 2025-11-27 22:26:01,031 | INFO     | chi2: 12.154342541938524
[2025-11-27 17:27:12] 2025-11-27 22:26:01,031 | INFO     | current chi2=12.154342541938524 (change=23.258944917820802 %)
[2025-11-27 17:27:12] 2025-11-27 22:26:01,032 | INFO     | left removable region: 10
[2025-11-27 17:27:12] 2025-11-27 22:26:01,032 | INFO     | sum of square deviations: 319496218939.5535
[2025-11-27 17:27:12] 2025-11-27 22:26:01,053 | INFO     | sum of deviations: 1637786610726.1245
[2025-11-27 17:27:12] 2025-11-27 22:26:01,054 | INFO     | mean x: 1764251126.058416
[2025-11-27 17:27:12] 2025-11-27 22:26:01,054 | INFO     | mean y: 3020205.302970297
[2025-11-27 17:27:12] 2025-11-27 22:26:01,054 | INFO     | intersect: -9040801602.064423
[2025-11-27 17:27:12] 2025-11-27 22:26:01,055 | INFO     | chi2: 6.814170258782285
[2025-11-27 17:27:12] 2025-11-27 22:26:01,055 | INFO     | current memory leak: 5.13 B/s (using 1010 data points, chi2=6.81)
[2025-11-27 17:27:12] 2025-11-27 22:26:01,056 | INFO     | could have reported an average CPU frequency of 3186 MHz (38 samples)
[2025-11-27 17:27:12] 2025-11-27 22:26:01,056 | INFO     | ..............................
[2025-11-27 17:27:12] 2025-11-27 22:26:01,056 | INFO     | . Timing measurements:
[2025-11-27 17:27:12] 2025-11-27 22:26:01,056 | INFO     | . get job = 0 s
[2025-11-27 17:27:12] 2025-11-27 22:26:01,057 | INFO     | . initial setup = 3 s
[2025-11-27 17:27:12] 2025-11-27 22:26:01,057 | INFO     | . payload setup = 21 s
[2025-11-27 17:27:12] 2025-11-27 22:26:01,057 | INFO     | . stage-in = 0 s
[2025-11-27 17:27:12] 2025-11-27 22:26:01,057 | INFO     | . payload execution = 62603 s
[2025-11-27 17:27:12] 2025-11-27 22:26:01,057 | INFO     | . stage-out = 12 s
[2025-11-27 17:27:12] 2025-11-27 22:26:01,057 | INFO     | . log creation = 2 s
[2025-11-27 17:27:12] 2025-11-27 22:26:01,057 | INFO     | ..............................
[2025-11-27 17:27:12] 2025-11-27 22:26:01,689 | INFO     | 
[2025-11-27 17:27:12] 2025-11-27 22:26:01,695 | INFO     | job summary report
[2025-11-27 17:27:12] 2025-11-27 22:26:01,695 | INFO     | --------------------------------------------------
[2025-11-27 17:27:12] 2025-11-27 22:26:01,695 | INFO     | PanDA job id: 6898719632
[2025-11-27 17:27:12] 2025-11-27 22:26:01,695 | INFO     | task id: 47556161
[2025-11-27 17:27:12] 2025-11-27 22:26:01,695 | INFO     | errors: (none)
[2025-11-27 17:27:12] 2025-11-27 22:26:01,695 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:27:12] 2025-11-27 22:26:01,695 | INFO     | pilot state: finished 
[2025-11-27 17:27:12] 2025-11-27 22:26:01,695 | INFO     | transexitcode: 0
[2025-11-27 17:27:12] 2025-11-27 22:26:01,695 | INFO     | exeerrorcode: 0
[2025-11-27 17:27:12] 2025-11-27 22:26:01,696 | INFO     | exeerrordiag: 
[2025-11-27 17:27:12] 2025-11-27 22:26:01,696 | INFO     | exitcode: 0
[2025-11-27 17:27:12] 2025-11-27 22:26:01,696 | INFO     | exitmsg: OK
[2025-11-27 17:27:12] 2025-11-27 22:26:01,696 | INFO     | cpuconsumptiontime: 205582 s
[2025-11-27 17:27:12] 2025-11-27 22:26:01,696 | INFO     | nevents: 1000
[2025-11-27 17:27:12] 2025-11-27 22:26:01,696 | INFO     | neventsw: 0
[2025-11-27 17:27:12] 2025-11-27 22:26:01,696 | INFO     | pid: 3322396
[2025-11-27 17:27:12] 2025-11-27 22:26:01,696 | INFO     | pgrp: 3322396
[2025-11-27 17:27:12] 2025-11-27 22:26:01,696 | INFO     | corecount: 9
[2025-11-27 17:27:12] 2025-11-27 22:26:01,696 | INFO     | event service: False
[2025-11-27 17:27:12] 2025-11-27 22:26:01,696 | INFO     | sizes: {0: 2284309, 11: 2284599, 62631: 2339056, 62633: 2339055, 62646: 2348105, 62650: 2348161, 62662: 2348535}
[2025-11-27 17:27:12] 2025-11-27 22:26:01,696 | INFO     | --------------------------------------------------
[2025-11-27 17:27:12] 2025-11-27 22:26:01,696 | INFO     | 
[2025-11-27 17:27:12] 2025-11-27 22:26:01,697 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 17:27:12] 2025-11-27 22:26:01,781 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,782 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,782 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,782 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,782 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,782 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,782 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,782 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,782 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,783 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,783 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,783 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,783 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,783 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,783 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,783 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,783 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,783 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:27:12] 2025-11-27 22:26:01,783 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,783 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:27:12] 2025-11-27 22:26:01,784 | INFO     | job 6898719632 has completed (purged errors)
[2025-11-27 17:27:12] 2025-11-27 22:26:01,784 | INFO     | overall cleanup function is called
[2025-11-27 17:27:12] 2025-11-27 22:26:02,836 | INFO     | --- collectZombieJob: --- 10, [3322396]
[2025-11-27 17:27:12] 2025-11-27 22:26:02,836 | INFO     | zombie collector waiting for pid 3322396
[2025-11-27 17:27:12] 2025-11-27 22:26:02,837 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:27:12] 2025-11-27 22:26:02,837 | INFO     | collected zombie processes
[2025-11-27 17:27:12] 2025-11-27 22:26:02,837 | INFO     | will attempt to kill all subprocesses of pid=3322396
[2025-11-27 17:27:12] 2025-11-27 22:26:04,418 | INFO     | process IDs to be killed: [3322396] (in reverse order)
[2025-11-27 17:27:12] 2025-11-27 22:26:04,660 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:27:12] 2025-11-27 22:26:04,660 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:27:12] 2025-11-27 22:26:04,737 | INFO     | did not find any defunct processes belonging to 3322396
[2025-11-27 17:27:12] 2025-11-27 22:26:04,798 | INFO     | did not find any defunct processes belonging to 3322396
[2025-11-27 17:27:12] 2025-11-27 22:26:04,800 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:27:12] 2025-11-27 22:26:04,800 | INFO     | ready for new job
[2025-11-27 17:27:12] 2025-11-27 22:26:04,800 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:27:12] 2025-11-27 22:26:04,805 | INFO     | ***************************************
[2025-11-27 17:27:12] 2025-11-27 22:26:04,805 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:27:12] 2025-11-27 22:26:04,805 | INFO     | ***************************************
[2025-11-27 17:27:12] 2025-11-27 22:26:04,805 | INFO     | 
[2025-11-27 17:27:12] 2025-11-27 22:26:04,811 | INFO     | architecture information:
[2025-11-27 17:27:12] 2025-11-27 22:26:04,811 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:27:12] 2025-11-27 22:26:04,932 | INFO     | cat /etc/os-release:
[2025-11-27 17:27:12] NAME="CentOS Linux"
[2025-11-27 17:27:12] VERSION="7 (Core)"
[2025-11-27 17:27:12] ID="centos"
[2025-11-27 17:27:12] ID_LIKE="rhel fedora"
[2025-11-27 17:27:12] VERSION_ID="7"
[2025-11-27 17:27:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:27:12] ANSI_COLOR="0;31"
[2025-11-27 17:27:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:27:12] HOME_URL="https://www.centos.org/"
[2025-11-27 17:27:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:27:12] 
[2025-11-27 17:27:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:27:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:27:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:27:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:27:12] 
[2025-11-27 17:27:12] 2025-11-27 22:26:04,932 | INFO     | ***************************************
[2025-11-27 17:27:12] 2025-11-27 22:26:05,437 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 17:27:12] 2025-11-27 22:26:05,497 | INFO     | sufficient remaining disk space (67344793600 B)
[2025-11-27 17:27:12] 2025-11-27 22:26:05,497 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:27:12] 2025-11-27 22:26:05,497 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:27:12] 2025-11-27 22:26:05,497 | INFO     | update_server=False
[2025-11-27 17:27:12] 2025-11-27 22:26:05,497 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:27:12] 2025-11-27 22:26:05,534 | INFO     | all data control threads have been joined
[2025-11-27 17:27:12] 2025-11-27 22:26:05,546 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:27:12] 2025-11-27 22:26:05,547 | INFO     | aborting loop
[2025-11-27 17:27:12] 2025-11-27 22:26:05,661 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:27:12] 2025-11-27 22:26:06,286 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:27:12] 2025-11-27 22:26:06,503 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:27:12] 2025-11-27 22:26:06,549 | INFO     | [data] control thread has finished
[2025-11-27 17:27:12] 2025-11-27 22:26:06,552 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:27:12] 2025-11-27 22:26:06,590 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:27:12] 2025-11-27 22:26:06,623 | INFO     | all payload control threads have been joined
[2025-11-27 17:27:12] 2025-11-27 22:26:06,686 | INFO     | all job control threads have been joined
[2025-11-27 17:27:12] 2025-11-27 22:26:06,745 | INFO     | [job] validate thread has finished
[2025-11-27 17:27:12] 2025-11-27 22:26:06,848 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:27:12] 2025-11-27 22:26:06,886 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:27:12] 2025-11-27 22:26:07,149 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:27:12] 2025-11-27 22:26:07,292 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:27:12] 2025-11-27 22:26:07,418 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:27:12] 2025-11-27 22:26:07,630 | INFO     | [payload] control thread has finished
[2025-11-27 17:27:12] 2025-11-27 22:26:07,671 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:27:12] 2025-11-27 22:26:07,692 | INFO     | [job] control thread has finished
[2025-11-27 17:27:12] 2025-11-27 22:26:07,698 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:27:12] 2025-11-27 22:26:07,731 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:27:12] 2025-11-27 22:26:08,605 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:27:12] 2025-11-27 22:26:12,621 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:27:12] 2025-11-27 22:26:34,654 | INFO     | PID=3311389 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:27:12] 2025-11-27 22:26:34,654 | INFO     | .. there are 72 such processes running
[2025-11-27 17:27:12] 2025-11-27 22:26:34,655 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:27:12] 2025-11-27 22:26:34,655 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:27:12] 2025-11-27 22:26:34,655 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:27:12] 2025-11-27 22:27:05,112 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:27:12] 2025-11-27 22:27:05,608 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140347529942848)>', '<ExcThread(monitor, started 140347023804160)>']
[2025-11-27 17:27:12] 2025-11-27 22:27:05,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:27:12] 2025-11-27 22:27:05,895 | INFO     | [monitor] control thread has ended
[2025-11-27 17:27:12] 2025-11-27 22:27:10,634 | INFO     | all workflow threads have been joined
[2025-11-27 17:27:12] 2025-11-27 22:27:10,634 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:27:12] 2025-11-27 22:27:10,635 | INFO     | traces error code: 0
[2025-11-27 17:27:12] 2025-11-27 22:27:10,635 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:27:12] 2025-11-27 22:27:12,052 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:27:12] 2025-11-27 22:27:12,073 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:27:12] 2025-11-27 22:27:12,078 [wrapper] pilotpid: 3311389
[2025-11-27 17:27:12] 2025-11-27 22:27:12,083 [wrapper] Pilot exit status: 0
[2025-11-27 17:27:12] 2025-11-27 22:27:12,115 [wrapper] pandaids: 6898719632
[2025-11-27 17:27:12] 2025-11-27 22:27:12,331 [wrapper] cleanup supervisor_pilot  726557 3311391
[2025-11-27 17:27:12] 2025-11-27 22:27:12,346 [wrapper] Test setup, not cleaning
[2025-11-27 17:27:12] 2025-11-27 22:27:12,384 [wrapper] apfmon messages muted
[2025-11-27 17:27:12] 2025-11-27 22:27:12,404 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:27:12] 2025-11-27 22:27:12,423 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:27:12]  *** Error codes and diagnostics ***
[2025-11-27 17:27:12]     "exeErrorCode": 0,
[2025-11-27 17:27:12]     "exeErrorDiag": "",
[2025-11-27 17:27:12]     "pilotErrorCode": 0,
[2025-11-27 17:27:12]     "pilotErrorDiag": "",
[2025-11-27 17:27:12]  *** Listing of results directory ***
[2025-11-27 17:27:12] total 1315544
[2025-11-27 17:27:12] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 17:27:12] -rwx------. 1 boincer umatlas     36292 Nov 26 11:46 runpilot2-wrapper.sh
[2025-11-27 17:27:12] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:46 queuedata.json
[2025-11-27 17:27:12] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:27:12] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:00 run_atlas
[2025-11-27 17:27:12] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:00 job.xml
[2025-11-27 17:27:12] -rw-r--r--. 2 boincer umatlas 409606475 Nov 27 00:00 EVNT.47483658._002691.pool.root.1
[2025-11-27 17:27:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:00 start_atlas.sh
[2025-11-27 17:27:12] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:00 shared
[2025-11-27 17:27:12] -rw-r--r--. 2 boincer umatlas    590108 Nov 27 00:00 input.tar.gz
[2025-11-27 17:27:12] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:00 boinc_lockfile
[2025-11-27 17:27:12] -rw-r--r--. 1 boincer umatlas      2783 Nov 27 00:00 pandaJob.out
[2025-11-27 17:27:12] -rw-------. 1 boincer umatlas        57 Nov 27 00:00 setup.sh.local
[2025-11-27 17:27:12] -rw-------. 1 boincer umatlas    991570 Nov 27 00:01 agis_schedconf.cvmfs.json
[2025-11-27 17:27:12] drwx------. 5 boincer umatlas      4096 Nov 27 00:01 pilot3
[2025-11-27 17:27:12] -rw-r--r--. 1 boincer umatlas       532 Nov 27 16:49 boinc_task_state.xml
[2025-11-27 17:27:12] -rw-r--r--. 1 boincer umatlas      6946 Nov 27 17:19 init_data.xml
[2025-11-27 17:27:12] -rw-------. 1 boincer umatlas 913615562 Nov 27 17:24 HITS.47556161._006731.pool.root.1
[2025-11-27 17:27:12] -rw-------. 1 boincer umatlas      1069 Nov 27 17:25 memory_monitor_summary.json
[2025-11-27 17:27:12] -rw-------. 1 boincer umatlas   1516240 Nov 27 17:25 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:27:12] -rw-------. 1 boincer umatlas   2268584 Nov 27 17:25 log.47556161._006731.job.log.tgz.1
[2025-11-27 17:27:12] -rw-------. 1 boincer umatlas        95 Nov 27 17:25 pilot_heartbeat.json
[2025-11-27 17:27:12] -rw-------. 1 boincer umatlas      8621 Nov 27 17:26 heartbeat.json
[2025-11-27 17:27:12] -rw-------. 1 boincer umatlas      4824 Nov 27 17:27 pilotlog.txt
[2025-11-27 17:27:12] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 17:27 boinc_mmap_file
[2025-11-27 17:27:12] -rw-r--r--. 1 boincer umatlas        29 Nov 27 17:27 wrapper_checkpoint.txt
[2025-11-27 17:27:12] -rw-------. 1 boincer umatlas   7720090 Nov 27 17:27 log.47556161._006731.job.log.1
[2025-11-27 17:27:12] -rw-------. 1 boincer umatlas       353 Nov 27 17:27 output.list
[2025-11-27 17:27:12] -rw-r--r--. 1 boincer umatlas       620 Nov 27 17:27 runtime_log
[2025-11-27 17:27:12] -rw-------. 1 boincer umatlas  10004480 Nov 27 17:27 result.tar.gz
[2025-11-27 17:27:12] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 17:27 runtime_log.err
[2025-11-27 17:27:12] -rw-------. 1 boincer umatlas       663 Nov 27 17:27 pb9MDmkpXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjKNKDmfcnS3n.diag
[2025-11-27 17:27:12] -rw-r--r--. 1 boincer umatlas     21806 Nov 27 17:27 stderr.txt
[2025-11-27 17:27:12] HITS file was successfully produced:
[2025-11-27 17:27:12] -rw-------. 1 boincer umatlas 913615562 Nov 27 17:24 shared/HITS.pool.root.1
[2025-11-27 17:27:12]  *** Contents of shared directory: ***
[2025-11-27 17:27:12] total 1302588
[2025-11-27 17:27:12] -rw-r--r--. 2 boincer umatlas 409606475 Nov 27 00:00 ATLAS.root_0
[2025-11-27 17:27:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:00 start_atlas.sh
[2025-11-27 17:27:12] -rw-r--r--. 2 boincer umatlas    590108 Nov 27 00:00 input.tar.gz
[2025-11-27 17:27:12] -rw-------. 1 boincer umatlas 913615562 Nov 27 17:24 HITS.pool.root.1
[2025-11-27 17:27:12] -rw-------. 1 boincer umatlas  10004480 Nov 27 17:27 result.tar.gz
17:27:14 (3307114): run_atlas exited; CPU time 207294.993031
17:27:14 (3307114): called boinc_finish(0)

</stderr_txt>
]]>

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