Stderr output

<core_client_version>8.2.7</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 21:46:40 (17708): vboxwrapper version 26210
2025-11-26 21:46:40 (17708): BOINC client version: 8.2.7
2025-11-26 21:46:41 (17708): Detected: VirtualBox VboxManage Interface (Version: 7.2.0)
2025-11-26 21:46:41 (17708): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 21:46:42 (17708): Create VM. (boinc_0a43e050f0f3a95f, slot#2)
2025-11-26 21:46:42 (17708): Setting Memory Size for VM. (4400MB)
2025-11-26 21:46:43 (17708): Setting CPU Count for VM. (4)
2025-11-26 21:46:43 (17708): Setting Chipset Options for VM.
2025-11-26 21:46:44 (17708): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 21:46:44 (17708): Setting Boot Options for VM.
2025-11-26 21:46:45 (17708): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 21:46:45 (17708): Enabling VM Network Access.
2025-11-26 21:46:45 (17708): Disabling USB Support for VM.
2025-11-26 21:46:46 (17708): Disabling COM Port Support for VM.
2025-11-26 21:46:46 (17708): Disabling LPT Port Support for VM.
2025-11-26 21:46:46 (17708): Disabling Audio Support for VM.
2025-11-26 21:46:46 (17708): Disabling Clipboard Support for VM.
2025-11-26 21:46:47 (17708): Disabling Drag and Drop Support for VM.
2025-11-26 21:46:47 (17708): Adding storage controller(s) to VM.
2025-11-26 21:46:47 (17708): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 21:46:48 (17708): Adding VirtualBox Guest Additions to VM.
2025-11-26 21:46:48 (17708): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 21:46:48 (17708): forwarding host port 57317 to guest port 80
2025-11-26 21:46:48 (17708): Enabling remote desktop for VM.
2025-11-26 21:46:49 (17708): Enabling shared directory for VM.
2025-11-26 21:46:50 (17708): Starting VM using VBoxManage interface. (boinc_0a43e050f0f3a95f, slot#2)
2025-11-26 21:46:55 (17708): Successfully started VM. (PID = '13052')
2025-11-26 21:46:55 (17708): Reporting VM Process ID to BOINC.
2025-11-26 21:46:55 (17708): Guest Log: BIOS: VirtualBox 7.2.0
2025-11-26 21:46:55 (17708): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 21:46:55 (17708): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 21:46:55 (17708): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 21:46:55 (17708): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 21:46:55 (17708): Detected: Web Application Enabled (http://localhost:57317)
2025-11-26 21:46:55 (17708): Detected: Remote Desktop Enabled (localhost:57323)
2025-11-26 21:46:55 (17708): Preference change detected
2025-11-26 21:46:55 (17708): Setting CPU throttle for VM. (100%)
2025-11-26 21:46:55 (17708): Setting checkpoint interval to 1800 seconds. (Higher value of (Preference: 1800 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 21:46:57 (17708): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 21:46:57 (17708): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 21:47:00 (17708): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 21:47:00 (17708): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 21:47:00 (17708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 21:47:06 (17708): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 21:47:06 (17708): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-26 21:47:20 (17708): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 21:47:20 (17708): Guest Log: 00:00:00.000113 main     Log opened 2025-11-26T21:47:18.010188000Z
2025-11-26 21:47:20 (17708): Guest Log: 00:00:00.000182 main     OS Product: Linux
2025-11-26 21:47:20 (17708): Guest Log: 00:00:00.000206 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 21:47:20 (17708): Guest Log: 00:00:00.000222 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 21:47:20 (17708): Guest Log: 00:00:00.000236 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 21:47:20 (17708): Guest Log: 00:00:00.000237 main     Process ID: 1313
2025-11-26 21:47:20 (17708): Guest Log: 00:00:00.000237 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 21:47:20 (17708): Guest Log: 00:00:00.000638 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 21:47:20 (17708): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 21:47:20 (17708): Guest Log: [INFO] Mounting shared directory
2025-11-26 21:47:20 (17708): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 21:47:30 (17708): Guest Log: 00:00:10.004324 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 347 164 000ns (GuestNow=1 764 211 649 359 260 000 ns GuestLast=1 764 193 638 012 096 000 ns fSetTimeLastLoop=true )
2025-11-26 21:48:17 (17708): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 21:48:17 (17708): Guest Log: [INFO] Detected branch: prod
2025-11-26 21:48:18 (17708): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 21:48:18 (17708): Guest Log: Copying input files
2025-11-26 21:48:20 (17708): Guest Log: Copied input files into RunAtlas.
2025-11-26 21:48:20 (17708): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 21:48:20 (17708): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 21:48:20 (17708): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 21:48:20 (17708): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 21:48:32 (17708): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 21:48:32 (17708): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 21:48:32 (17708): Guest Log: 2.6.3.0 1615 0 30156 153343 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 21:48:35 (17708): Guest Log: copied the webapp to /var/www
2025-11-26 21:48:35 (17708): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-26 21:48:35 (17708): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-26 21:48:35 (17708): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 21:48:35 (17708): Guest Log:  *** Starting ATLAS job. (PandaID=6898120357 taskID=47556161) ***
2025-11-26 23:26:57 (17708): Status Report: Elapsed Time: '6000.000000'
2025-11-26 23:26:57 (17708): Status Report: CPU Time: '21127.328125'
2025-11-27 01:07:00 (17708): Status Report: Elapsed Time: '12000.000000'
2025-11-27 01:07:00 (17708): Status Report: CPU Time: '45007.093750'
2025-11-27 02:47:03 (17708): Status Report: Elapsed Time: '18000.000000'
2025-11-27 02:47:03 (17708): Status Report: CPU Time: '68891.765625'
2025-11-27 04:27:06 (17708): Status Report: Elapsed Time: '24000.000000'
2025-11-27 04:27:06 (17708): Status Report: CPU Time: '92749.062500'
2025-11-27 06:07:08 (17708): Status Report: Elapsed Time: '30000.000000'
2025-11-27 06:07:08 (17708): Status Report: CPU Time: '116592.781250'
2025-11-27 07:47:14 (17708): Status Report: Elapsed Time: '36000.000000'
2025-11-27 07:47:14 (17708): Status Report: CPU Time: '140481.968750'
2025-11-27 07:48:20 (17708): VM state change detected. (old = 'running', new = 'paused')
2025-11-27 09:03:44 (17708): Guest Log: 10:00:44.107069 timesync vgsvcTimeSyncWorker: Radical host time change: 4 527 604 000 000ns (HostNow=1 764 252 167 462 000 000 ns HostLast=1 764 247 639 858 000 000 ns)
2025-11-27 09:03:44 (17708): VM state change detected. (old = 'paused', new = 'running')
2025-11-27 09:03:54 (17708): Guest Log: 10:00:54.108285 timesync vgsvcTimeSyncWorker: Radical guest time change: 4 494 001 342 000ns (GuestNow=1 764 252 177 463 295 000 ns GuestLast=1 764 247 683 461 953 000 ns fSetTimeLastLoop=true )
2025-11-27 10:42:42 (17708): Status Report: Elapsed Time: '42000.000000'
2025-11-27 10:42:42 (17708): Status Report: CPU Time: '164338.812500'
2025-11-27 12:22:45 (17708): Status Report: Elapsed Time: '48000.000000'
2025-11-27 12:22:45 (17708): Status Report: CPU Time: '188218.640625'
2025-11-27 14:02:48 (17708): Status Report: Elapsed Time: '54000.316757'
2025-11-27 14:02:48 (17708): Status Report: CPU Time: '212069.984375'
2025-11-27 15:11:28 (17708): Guest Log:  *** Job finished ***
2025-11-27 15:11:28 (17708): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:09:48,804 | INFO     | [data] copytool_in thread has finished
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:09:50,325 | INFO     | [data] queue_monitor thread has finished
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:32,197 | INFO     | [monitor] cgroup control has ended
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:33,699 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139751112910656)>', '<ExcThread(monitor, started 139750811870976)>']
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:34,426 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:34,426 | INFO     | [monitor] control thread has ended
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:38,811 | INFO     | all workflow threads have been joined
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:38,811 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:38,811 | INFO     | traces error code: 0
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:38,811 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:39,059 [wrapper] ==== pilot stdout END ====
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:39,063 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:39,067 [wrapper] pilotpid: 6010
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:39,071 [wrapper] Pilot exit status: 0
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:39,102 [wrapper] pandaids: 6898120357
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:39,129 [wrapper] cleanup supervisor_pilot 22099 6011
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:39,132 [wrapper] Test setup, not cleaning
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:39,138 [wrapper] apfmon messages muted
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:39,142 [wrapper] ==== wrapper stdout END ====
2025-11-27 15:11:28 (17708): Guest Log: 2025-11-27 20:10:39,146 [wrapper] ==== wrapper stderr END ====
2025-11-27 15:11:28 (17708): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 15:11:28 (17708): Guest Log:     "exeErrorCode": 0,
2025-11-27 15:11:28 (17708): Guest Log:     "exeErrorDiag": "",
2025-11-27 15:11:28 (17708): Guest Log:     "pilotErrorCode": 0,
2025-11-27 15:11:28 (17708): Guest Log:     "pilotErrorDiag": "",
2025-11-27 15:11:28 (17708): Guest Log:  *** Listing of results directory ***
2025-11-27 15:11:28 (17708): Guest Log: total 928052
2025-11-27 15:11:28 (17708): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 26 02:38 pilot3.tar.gz
2025-11-27 15:11:28 (17708): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 26 03:26 queuedata.json
2025-11-27 15:11:28 (17708): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 26 03:27 runpilot2-wrapper.sh
2025-11-27 15:11:28 (17708): Guest Log: -rwxr-xr-x. 1 atlas atlas      8486 Nov 27 02:48 init_data.xml
2025-11-27 15:11:28 (17708): Guest Log: -rwxr-xr-x. 1 atlas atlas    590105 Nov 27 02:48 input.tar.gz
2025-11-27 15:11:28 (17708): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 27 02:48 start_atlas.sh
2025-11-27 15:11:28 (17708): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 27 02:48 EVNT.47483658._002424.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 15:11:28 (17708): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 27 02:48 pandaJob.out
2025-11-27 15:11:28 (17708): Guest Log: -rw-------. 1 atlas atlas    991554 Nov 27 02:49 agis_schedconf.cvmfs.json
2025-11-27 15:11:28 (17708): Guest Log: drwx------. 5 atlas atlas      4096 Nov 27 02:49 pilot3
2025-11-27 15:11:28 (17708): Guest Log: -rw-------. 1 atlas atlas 927758156 Nov 27 20:09 HITS.47556161._004067.pool.root.1
2025-11-27 15:11:28 (17708): Guest Log: -rw-------. 1 atlas atlas        97 Nov 27 20:09 pilot_heartbeat.json
2025-11-27 15:11:28 (17708): Guest Log: -rw-------. 1 atlas atlas      1036 Nov 27 20:09 memory_monitor_summary.json
2025-11-27 15:11:28 (17708): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 20:09 agis_ddmendpoints.agis.ALL.json
2025-11-27 15:11:28 (17708): Guest Log: -rw-------. 1 atlas atlas   1658714 Nov 27 20:09 log.47556161._004067.job.log.tgz.1
2025-11-27 15:11:28 (17708): Guest Log: -rw-------. 1 atlas atlas      8644 Nov 27 20:09 heartbeat.json
2025-11-27 15:11:28 (17708): Guest Log: -rw-------. 1 atlas atlas      4612 Nov 27 20:10 pilotlog.txt
2025-11-27 15:11:28 (17708): Guest Log: -rw-------. 1 atlas atlas   7701834 Nov 27 20:10 log.47556161._004067.job.log.1
2025-11-27 15:11:28 (17708): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 20:10 output.list
2025-11-27 15:11:28 (17708): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 20:10 runtime_log
2025-11-27 15:11:28 (17708): Guest Log: -rw-------. 1 atlas atlas   9379840 Nov 27 20:10 result.tar.gz
2025-11-27 15:11:28 (17708): Guest Log: -rw-r--r--. 1 atlas atlas      8744 Nov 27 20:10 runtime_log.err
2025-11-27 15:11:28 (17708): Guest Log: -rw-------. 1 atlas atlas       660 Nov 27 20:10 89wLDmiMLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqoMKDmLJVChn.diag
2025-11-27 15:11:28 (17708): Guest Log: Looking for outputfile HITS.47556161._004067.pool.root.1
2025-11-27 15:11:28 (17708): Guest Log: HITS file was successfully produced
2025-11-27 15:11:28 (17708): Guest Log: -rw-------. 1 atlas atlas 927758156 Nov 27 20:09 /home/atlas/RunAtlas/HITS.47556161._004067.pool.root.1
2025-11-27 15:11:34 (17708): Guest Log: Successfully finished the ATLAS job!
2025-11-27 15:11:34 (17708): Guest Log: Copying the results back to the shared directory!
2025-11-27 15:11:34 (17708): Guest Log:  *** Contents of shared directory: ***
2025-11-27 15:11:34 (17708): Guest Log: total 1314188
2025-11-27 15:11:34 (17708): Guest Log: -rwxrwxrwx. 1 root root 407962490 Nov 27 02:46 ATLAS.root_0
2025-11-27 15:11:34 (17708): Guest Log: -rwxrwxrwx. 1 root root 927758156 Nov 27  2025 HITS.pool.root.1
2025-11-27 15:11:34 (17708): Guest Log: -rwxrwxrwx. 1 root root      8486 Nov 27 02:46 init_data.xml
2025-11-27 15:11:34 (17708): Guest Log: -rwxrwxrwx. 1 root root    590105 Nov 27 02:45 input.tar.gz
2025-11-27 15:11:34 (17708): Guest Log: -rwxrwxrwx. 1 root root   9379840 Nov 27  2025 result.tar.gz
2025-11-27 15:11:34 (17708): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 27 02:45 start_atlas.sh
2025-11-27 15:11:34 (17708): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 15:11:34 (17708): VM Completion File Detected.
2025-11-27 15:11:34 (17708): Powering off VM.
2025-11-27 15:11:36 (17708): Successfully stopped VM.
2025-11-27 15:11:36 (17708): Deregistering VM. (boinc_0a43e050f0f3a95f, slot#2)
2025-11-27 15:11:36 (17708): Removing network bandwidth throttle group from VM.
2025-11-27 15:11:37 (17708): Removing VM from VirtualBox.
2025-11-27 15:11:47 (17708): called boinc_finish(0)

</stderr_txt>
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