Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:29:47 (38321): wrapper (7.7.26015): starting
21:29:47 (38321): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 21:29:47] Arguments: --nthreads 8
[2025-11-26 21:29:47] Threads: 8
[2025-11-26 21:29:47] Checking for CVMFS
[2025-11-26 21:29:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 21:29:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 21:29:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 21:29:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 21:29:47] 2.11.2.0 13817 546200 297940 153343 1 56 13594713 18432000 2827 130560 8 261346504 99.608 266437941 24622 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-26 21:29:47] CVMFS is ok
[2025-11-26 21:29:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 21:29:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 21:29:47] Further information can be found at the LHC@home message board.
[2025-11-26 21:29:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 21:29:47] Checking for apptainer binary...
[2025-11-26 21:29:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 21:29:47] Running /usr/bin/apptainer --version
[2025-11-26 21:29:47] apptainer version 1.3.2-1.el7
[2025-11-26 21:29:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 21:29:48] c-9-29.aglt2.org
[2025-11-26 21:29:48] apptainer works
[2025-11-26 21:29:48] Set ATHENA_PROC_NUMBER=8
[2025-11-26 21:29:48] Set ATHENA_CORE_NUMBER=8
[2025-11-26 21:29:48] Starting ATLAS job with PandaID=6898378186
[2025-11-26 21:29:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:00:06 (38321): BOINC client no longer exists - exiting
09:00:06 (38321): timer handler: client dead, exiting
09:10:21 (45589): wrapper (7.7.26015): starting
09:10:21 (45589): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 09:10:21] Arguments: --nthreads 8
[2025-11-27 09:10:21] Threads: 8
[2025-11-27 09:10:21] This job has been restarted, cleaning up previous attempt
[2025-11-27 09:10:21] Checking for CVMFS
[2025-11-27 09:10:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:10:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:10:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:10:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:10:21] 2.11.2.0 13817 546901 297656 153366 2 56 13795287 18432001 1 130560 8 262262553 99.610 266466954 24621 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-27 09:10:21] CVMFS is ok
[2025-11-27 09:10:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:10:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:10:21] Further information can be found at the LHC@home message board.
[2025-11-27 09:10:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:10:21] Checking for apptainer binary...
[2025-11-27 09:10:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:10:21] Running /usr/bin/apptainer --version
[2025-11-27 09:10:21] apptainer version 1.3.2-1.el7
[2025-11-27 09:10:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:10:22] c-9-29.aglt2.org
[2025-11-27 09:10:22] apptainer works
[2025-11-27 09:10:22] Set ATHENA_PROC_NUMBER=8
[2025-11-27 09:10:22] Set ATHENA_CORE_NUMBER=8
[2025-11-27 09:10:22] Starting ATLAS job with PandaID=6898378186
[2025-11-27 09:10:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 02:18:26]  *** The last 200 lines of the pilot log: ***
[2025-11-28 02:18:26] 2025-11-28 07:18:10,787 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 02:18:26] 2025-11-28 07:18:10,787 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 02:18:26] 2025-11-28 07:18:10,800 | INFO     | fitting pss+swap vs Time
[2025-11-28 02:18:26] 2025-11-28 07:18:10,801 | INFO     | sum of square deviations: 320429507009.13916
[2025-11-28 02:18:26] 2025-11-28 07:18:10,824 | INFO     | sum of deviations: 1583103267457.7976
[2025-11-28 02:18:26] 2025-11-28 07:18:10,825 | INFO     | mean x: 1764283464.652819
[2025-11-28 02:18:26] 2025-11-28 07:18:10,825 | INFO     | mean y: 2853784.176063304
[2025-11-28 02:18:26] 2025-11-28 07:18:10,825 | INFO     | intersect: -8713705885.011892
[2025-11-28 02:18:26] 2025-11-28 07:18:10,826 | INFO     | chi2: 6.645054404322871
[2025-11-28 02:18:26] 2025-11-28 07:18:10,826 | INFO     | sum of square deviations: 315699042864.49774
[2025-11-28 02:18:26] 2025-11-28 07:18:10,842 | INFO     | sum of deviations: 1904410012231.269
[2025-11-28 02:18:26] 2025-11-28 07:18:10,842 | INFO     | mean x: 1764283312.1560636
[2025-11-28 02:18:26] 2025-11-28 07:18:10,842 | INFO     | mean y: 2864137.6033797218
[2025-11-28 02:18:26] 2025-11-28 07:18:10,842 | INFO     | intersect: -10639926456.870089
[2025-11-28 02:18:26] 2025-11-28 07:18:10,843 | INFO     | chi2: 3.613567219952482
[2025-11-28 02:18:26] 2025-11-28 07:18:10,843 | INFO     | current chi2=3.613567219952482 (change=45.62020112880169 %)
[2025-11-28 02:18:26] 2025-11-28 07:18:10,844 | INFO     | sum of square deviations: 311015370294.83496
[2025-11-28 02:18:26] 2025-11-28 07:18:10,859 | INFO     | sum of deviations: 2077004136455.978
[2025-11-28 02:18:26] 2025-11-28 07:18:10,859 | INFO     | mean x: 1764283159.6593406
[2025-11-28 02:18:26] 2025-11-28 07:18:10,859 | INFO     | mean y: 2869757.1788211786
[2025-11-28 02:18:26] 2025-11-28 07:18:10,859 | INFO     | intersect: -11779259907.404282
[2025-11-28 02:18:26] 2025-11-28 07:18:10,860 | INFO     | chi2: 2.668513238163403
[2025-11-28 02:18:26] 2025-11-28 07:18:10,860 | INFO     | current chi2=2.668513238163403 (change=26.152937644854614 %)
[2025-11-28 02:18:26] 2025-11-28 07:18:10,861 | INFO     | sum of square deviations: 306378256737.65063
[2025-11-28 02:18:26] 2025-11-28 07:18:10,879 | INFO     | sum of deviations: 2188000288782.3113
[2025-11-28 02:18:26] 2025-11-28 07:18:10,880 | INFO     | mean x: 1764283007.1626506
[2025-11-28 02:18:26] 2025-11-28 07:18:10,880 | INFO     | mean y: 2873403.0351405623
[2025-11-28 02:18:26] 2025-11-28 07:18:10,880 | INFO     | intersect: -12596753510.016682
[2025-11-28 02:18:26] 2025-11-28 07:18:10,881 | INFO     | chi2: 2.1531421109200424
[2025-11-28 02:18:26] 2025-11-28 07:18:10,881 | INFO     | current chi2=2.1531421109200424 (change=19.3130436781368 %)
[2025-11-28 02:18:26] 2025-11-28 07:18:10,882 | INFO     | right removable region: 995
[2025-11-28 02:18:26] 2025-11-28 07:18:10,883 | INFO     | sum of square deviations: 315698701813.8094
[2025-11-28 02:18:26] 2025-11-28 07:18:10,906 | INFO     | sum of deviations: 1348852962824.2493
[2025-11-28 02:18:26] 2025-11-28 07:18:10,906 | INFO     | mean x: 1764283617.1550696
[2025-11-28 02:18:26] 2025-11-28 07:18:10,906 | INFO     | mean y: 2861323.735586481
[2025-11-28 02:18:26] 2025-11-28 07:18:10,906 | INFO     | intersect: -7535209534.932111
[2025-11-28 02:18:26] 2025-11-28 07:18:10,907 | INFO     | chi2: 4.874299497261816
[2025-11-28 02:18:26] 2025-11-28 07:18:10,907 | INFO     | current chi2=4.874299497261816 (change=26.64771120472857 %)
[2025-11-28 02:18:26] 2025-11-28 07:18:10,908 | INFO     | sum of square deviations: 311014688315.4687
[2025-11-28 02:18:26] 2025-11-28 07:18:10,930 | INFO     | sum of deviations: 1270286756327.5537
[2025-11-28 02:18:26] 2025-11-28 07:18:10,930 | INFO     | mean x: 1764283769.6573427
[2025-11-28 02:18:26] 2025-11-28 07:18:10,930 | INFO     | mean y: 2863881.3806193806
[2025-11-28 02:18:26] 2025-11-28 07:18:10,931 | INFO     | intersect: -7203054009.951038
[2025-11-28 02:18:26] 2025-11-28 07:18:10,932 | INFO     | chi2: 4.786839114735888
[2025-11-28 02:18:26] 2025-11-28 07:18:10,932 | INFO     | current chi2=4.786839114735888 (change=1.7943169592894332 %)
[2025-11-28 02:18:26] 2025-11-28 07:18:10,932 | INFO     | left removable region: 20
[2025-11-28 02:18:26] 2025-11-28 07:18:10,934 | INFO     | sum of square deviations: 287404367831.6573
[2025-11-28 02:18:26] 2025-11-28 07:18:10,948 | INFO     | sum of deviations: 1752323937268.2715
[2025-11-28 02:18:26] 2025-11-28 07:18:10,948 | INFO     | mean x: 1764283586.6697435
[2025-11-28 02:18:26] 2025-11-28 07:18:10,948 | INFO     | mean y: 2888095.798974359
[2025-11-28 02:18:26] 2025-11-28 07:18:10,948 | INFO     | intersect: -10754068676.90313
[2025-11-28 02:18:26] 2025-11-28 07:18:10,949 | INFO     | chi2: 0.21221665555070673
[2025-11-28 02:18:26] 2025-11-28 07:18:10,949 | INFO     | current memory leak: 6.10 B/s (using 975 data points, chi2=0.21)
[2025-11-28 02:18:26] 2025-11-28 07:18:10,950 | INFO     | could have reported an average CPU frequency of 2989 MHz (37 samples)
[2025-11-28 02:18:26] 2025-11-28 07:18:10,950 | INFO     | ..............................
[2025-11-28 02:18:26] 2025-11-28 07:18:10,950 | INFO     | . Timing measurements:
[2025-11-28 02:18:26] 2025-11-28 07:18:10,950 | INFO     | . get job = 0 s
[2025-11-28 02:18:26] 2025-11-28 07:18:10,950 | INFO     | . initial setup = 7 s
[2025-11-28 02:18:26] 2025-11-28 07:18:10,950 | INFO     | . payload setup = 3 s
[2025-11-28 02:18:26] 2025-11-28 07:18:10,950 | INFO     | . stage-in = 0 s
[2025-11-28 02:18:26] 2025-11-28 07:18:10,951 | INFO     | . payload execution = 61621 s
[2025-11-28 02:18:26] 2025-11-28 07:18:10,951 | INFO     | . stage-out = 3 s
[2025-11-28 02:18:26] 2025-11-28 07:18:10,951 | INFO     | . log creation = 0 s
[2025-11-28 02:18:26] 2025-11-28 07:18:10,951 | INFO     | ..............................
[2025-11-28 02:18:26] 2025-11-28 07:18:10,959 | INFO     | time since job start (61653s) is within the limit (172800.0s)
[2025-11-28 02:18:26] 2025-11-28 07:18:11,013 | INFO     | 
[2025-11-28 02:18:26] 2025-11-28 07:18:11,013 | INFO     | job summary report
[2025-11-28 02:18:26] 2025-11-28 07:18:11,013 | INFO     | --------------------------------------------------
[2025-11-28 02:18:26] 2025-11-28 07:18:11,013 | INFO     | PanDA job id: 6898378186
[2025-11-28 02:18:26] 2025-11-28 07:18:11,013 | INFO     | task id: 47556173
[2025-11-28 02:18:26] 2025-11-28 07:18:11,013 | INFO     | errors: (none)
[2025-11-28 02:18:26] 2025-11-28 07:18:11,013 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 02:18:26] 2025-11-28 07:18:11,013 | INFO     | pilot state: finished 
[2025-11-28 02:18:26] 2025-11-28 07:18:11,013 | INFO     | transexitcode: 0
[2025-11-28 02:18:26] 2025-11-28 07:18:11,013 | INFO     | exeerrorcode: 0
[2025-11-28 02:18:26] 2025-11-28 07:18:11,013 | INFO     | exeerrordiag: 
[2025-11-28 02:18:26] 2025-11-28 07:18:11,014 | INFO     | exitcode: 0
[2025-11-28 02:18:26] 2025-11-28 07:18:11,014 | INFO     | exitmsg: OK
[2025-11-28 02:18:26] 2025-11-28 07:18:11,014 | INFO     | cpuconsumptiontime: 473321 s
[2025-11-28 02:18:26] 2025-11-28 07:18:11,014 | INFO     | nevents: 1000
[2025-11-28 02:18:26] 2025-11-28 07:18:11,014 | INFO     | neventsw: 0
[2025-11-28 02:18:26] 2025-11-28 07:18:11,014 | INFO     | pid: 8599
[2025-11-28 02:18:26] 2025-11-28 07:18:11,014 | INFO     | pgrp: 8599
[2025-11-28 02:18:26] 2025-11-28 07:18:11,014 | INFO     | corecount: 8
[2025-11-28 02:18:26] 2025-11-28 07:18:11,014 | INFO     | event service: False
[2025-11-28 02:18:26] 2025-11-28 07:18:11,014 | INFO     | sizes: {0: 2284202, 1: 2284344, 4: 2284606, 11: 2284634, 61629: 2337355, 61633: 2346349, 61636: 2346533, 61640: 2346779}
[2025-11-28 02:18:26] 2025-11-28 07:18:11,014 | INFO     | --------------------------------------------------
[2025-11-28 02:18:26] 2025-11-28 07:18:11,014 | INFO     | 
[2025-11-28 02:18:26] 2025-11-28 07:18:11,015 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-28 02:18:26] 2025-11-28 07:18:11,033 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,033 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,033 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,034 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,034 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,034 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,034 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,034 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,034 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,034 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,034 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,034 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,034 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,034 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,035 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,035 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,035 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 02:18:26] 2025-11-28 07:18:11,035 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,035 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 02:18:26] 2025-11-28 07:18:11,035 | INFO     | job 6898378186 has completed (purged errors)
[2025-11-28 02:18:26] 2025-11-28 07:18:11,035 | INFO     | overall cleanup function is called
[2025-11-28 02:18:26] 2025-11-28 07:18:12,047 | INFO     | --- collectZombieJob: --- 10, [8599]
[2025-11-28 02:18:26] 2025-11-28 07:18:12,049 | INFO     | zombie collector waiting for pid 8599
[2025-11-28 02:18:26] 2025-11-28 07:18:12,049 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 02:18:26] 2025-11-28 07:18:12,049 | INFO     | collected zombie processes
[2025-11-28 02:18:26] 2025-11-28 07:18:12,050 | INFO     | will attempt to kill all subprocesses of pid=8599
[2025-11-28 02:18:26] 2025-11-28 07:18:12,296 | INFO     | process IDs to be killed: [8599] (in reverse order)
[2025-11-28 02:18:26] 2025-11-28 07:18:12,372 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 02:18:26] 2025-11-28 07:18:12,372 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 02:18:26] 2025-11-28 07:18:12,380 | INFO     | did not find any defunct processes belonging to 8599
[2025-11-28 02:18:26] 2025-11-28 07:18:12,388 | INFO     | did not find any defunct processes belonging to 8599
[2025-11-28 02:18:26] 2025-11-28 07:18:12,389 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 02:18:26] 2025-11-28 07:18:12,390 | INFO     | ready for new job
[2025-11-28 02:18:26] 2025-11-28 07:18:12,390 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 02:18:26] 2025-11-28 07:18:12,394 | INFO     | ***************************************
[2025-11-28 02:18:26] 2025-11-28 07:18:12,395 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 02:18:26] 2025-11-28 07:18:12,395 | INFO     | ***************************************
[2025-11-28 02:18:26] 2025-11-28 07:18:12,395 | INFO     | 
[2025-11-28 02:18:26] 2025-11-28 07:18:12,396 | INFO     | architecture information:
[2025-11-28 02:18:26] 2025-11-28 07:18:12,396 | INFO     | executing command: cat /etc/os-release
[2025-11-28 02:18:26] 2025-11-28 07:18:12,407 | INFO     | cat /etc/os-release:
[2025-11-28 02:18:26] NAME="CentOS Linux"
[2025-11-28 02:18:26] VERSION="7 (Core)"
[2025-11-28 02:18:26] ID="centos"
[2025-11-28 02:18:26] ID_LIKE="rhel fedora"
[2025-11-28 02:18:26] VERSION_ID="7"
[2025-11-28 02:18:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 02:18:26] ANSI_COLOR="0;31"
[2025-11-28 02:18:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 02:18:26] HOME_URL="https://www.centos.org/"
[2025-11-28 02:18:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 02:18:26] 
[2025-11-28 02:18:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 02:18:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 02:18:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 02:18:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 02:18:26] 
[2025-11-28 02:18:26] 2025-11-28 07:18:12,407 | INFO     | ***************************************
[2025-11-28 02:18:26] 2025-11-28 07:18:12,910 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-28 02:18:26] 2025-11-28 07:18:12,927 | INFO     | sufficient remaining disk space (100197728256 B)
[2025-11-28 02:18:26] 2025-11-28 07:18:12,928 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 02:18:26] 2025-11-28 07:18:12,928 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 02:18:26] 2025-11-28 07:18:12,928 | INFO     | update_server=False
[2025-11-28 02:18:26] 2025-11-28 07:18:12,928 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 02:18:26] 2025-11-28 07:18:12,929 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-28 02:18:26] 2025-11-28 07:18:12,929 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 02:18:26] 2025-11-28 07:18:12,929 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 02:18:26] 2025-11-28 07:18:12,929 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 02:18:26] 2025-11-28 07:18:12,929 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:18:26] 2025-11-28 07:18:12,930 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 02:18:26] 2025-11-28 07:18:12,991 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 02:18:26] 2025-11-28 07:18:12,997 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:18:26] 2025-11-28 07:18:12,998 | INFO     | aborting loop
[2025-11-28 02:18:26] 2025-11-28 07:18:13,371 | INFO     | all data control threads have been joined
[2025-11-28 02:18:26] 2025-11-28 07:18:13,841 | INFO     | all payload control threads have been joined
[2025-11-28 02:18:26] 2025-11-28 07:18:13,933 | INFO     | [job] retrieve thread has finished
[2025-11-28 02:18:26] 2025-11-28 07:18:13,934 | INFO     | [job] queue monitor thread has finished
[2025-11-28 02:18:26] 2025-11-28 07:18:14,002 | INFO     | [job] job monitor thread has finished
[2025-11-28 02:18:26] 2025-11-28 07:18:14,349 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 02:18:26] 2025-11-28 07:18:14,366 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 02:18:26] 2025-11-28 07:18:14,376 | INFO     | [data] control thread has finished
[2025-11-28 02:18:26] 2025-11-28 07:18:14,387 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 02:18:26] 2025-11-28 07:18:14,405 | INFO     | [data] copytool_in thread has finished
[2025-11-28 02:18:26] 2025-11-28 07:18:14,489 | INFO     | all job control threads have been joined
[2025-11-28 02:18:26] 2025-11-28 07:18:14,541 | INFO     | [payload] validate_post thread has finished
[2025-11-28 02:18:26] 2025-11-28 07:18:14,847 | INFO     | [payload] control thread has finished
[2025-11-28 02:18:26] 2025-11-28 07:18:14,935 | INFO     | [data] copytool_out thread has finished
[2025-11-28 02:18:26] 2025-11-28 07:18:15,125 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 02:18:26] 2025-11-28 07:18:15,196 | INFO     | [job] validate thread has finished
[2025-11-28 02:18:26] 2025-11-28 07:18:15,420 | INFO     | [payload] failed_post thread has finished
[2025-11-28 02:18:26] 2025-11-28 07:18:15,494 | INFO     | [job] control thread has finished
[2025-11-28 02:18:26] 2025-11-28 07:18:16,997 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 02:18:26] 2025-11-28 07:18:20,400 | INFO     | [monitor] cgroup control has ended
[2025-11-28 02:18:26] 2025-11-28 07:18:21,463 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140105567876928)>', '<ExcThread(monitor, started 140104911808256)>']
[2025-11-28 02:18:26] 2025-11-28 07:18:21,975 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 02:18:26] 2025-11-28 07:18:21,975 | INFO     | [monitor] control thread has ended
[2025-11-28 02:18:26] 2025-11-28 07:18:26,489 | INFO     | all workflow threads have been joined
[2025-11-28 02:18:26] 2025-11-28 07:18:26,489 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 02:18:26] 2025-11-28 07:18:26,489 | INFO     | traces error code: 0
[2025-11-28 02:18:26] 2025-11-28 07:18:26,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 02:18:26] 2025-11-28 07:18:26,581 [wrapper] ==== pilot stdout END ====
[2025-11-28 02:18:26] 2025-11-28 07:18:26,584 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 02:18:26] 2025-11-28 07:18:26,586 [wrapper] pilotpid: 11712
[2025-11-28 02:18:26] 2025-11-28 07:18:26,588 [wrapper] Pilot exit status: 0
[2025-11-28 02:18:26] 2025-11-28 07:18:26,595 [wrapper] pandaids: 6898378186 6898378186
[2025-11-28 02:18:26] 2025-11-28 07:18:26,629 [wrapper] cleanup supervisor_pilot 35733 11714
[2025-11-28 02:18:26] 2025-11-28 07:18:26,631 [wrapper] Test setup, not cleaning
[2025-11-28 02:18:26] 2025-11-28 07:18:26,633 [wrapper] apfmon messages muted
[2025-11-28 02:18:26] 2025-11-28 07:18:26,635 [wrapper] ==== wrapper stdout END ====
[2025-11-28 02:18:26] 2025-11-28 07:18:26,637 [wrapper] ==== wrapper stderr END ====
[2025-11-28 02:18:26]  *** Error codes and diagnostics ***
[2025-11-28 02:18:26]     "exeErrorCode": 0,
[2025-11-28 02:18:26]     "exeErrorDiag": "",
[2025-11-28 02:18:26]     "pilotErrorCode": 0,
[2025-11-28 02:18:26]     "pilotErrorDiag": "",
[2025-11-28 02:18:26]  *** Listing of results directory ***
[2025-11-28 02:18:26] total 1702704
[2025-11-28 02:18:26] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 02:18:26] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-28 02:18:26] -rwx------ 1 boincer umatlas     36292 Nov 26 11:39 runpilot2-wrapper.sh
[2025-11-28 02:18:26] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 11:41 queuedata.json
[2025-11-28 02:18:26] -rw-r--r-- 1 boincer umatlas       100 Nov 26 21:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 02:18:26] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 21:29 run_atlas
[2025-11-28 02:18:26] -rw-r--r-- 1 boincer umatlas       105 Nov 26 21:29 job.xml
[2025-11-28 02:18:26] -rw-r--r-- 3 boincer umatlas 408431927 Nov 26 21:29 EVNT.47483658._003205.pool.root.1
[2025-11-28 02:18:26] -rw-r--r-- 3 boincer umatlas 408431927 Nov 26 21:29 ATLAS.root_0
[2025-11-28 02:18:26] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 21:29 start_atlas.sh
[2025-11-28 02:18:26] drwxrwx--x 2 boincer umatlas      4096 Nov 26 21:29 shared
[2025-11-28 02:18:26] -rw-r--r-- 2 boincer umatlas    590113 Nov 26 21:29 input.tar.gz
[2025-11-28 02:18:26] -rw-r--r-- 1 boincer umatlas         0 Nov 26 21:29 boinc_lockfile
[2025-11-28 02:18:26] -rw-r--r-- 1 boincer umatlas      2787 Nov 27 09:10 pandaJob.out
[2025-11-28 02:18:26] -rw------- 1 boincer umatlas        57 Nov 27 09:10 setup.sh.local
[2025-11-28 02:18:26] -rw------- 1 boincer umatlas    991588 Nov 27 09:10 agis_schedconf.cvmfs.json
[2025-11-28 02:18:26] -rw-r--r-- 1 boincer umatlas       534 Nov 28 02:01 boinc_task_state.xml
[2025-11-28 02:18:26] -rw-r--r-- 1 boincer umatlas      6039 Nov 28 02:12 init_data.xml
[2025-11-28 02:18:26] -rw------- 1 boincer umatlas 901455743 Nov 28 02:17 HITS.47556173._001613.pool.root.1
[2025-11-28 02:18:26] -rw------- 1 boincer umatlas        96 Nov 28 02:17 pilot_heartbeat.json
[2025-11-28 02:18:26] -rw------- 1 boincer umatlas      1058 Nov 28 02:17 memory_monitor_summary.json
[2025-11-28 02:18:26] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 02:18 boinc_mmap_file
[2025-11-28 02:18:26] -rw-r--r-- 1 boincer umatlas        30 Nov 28 02:18 wrapper_checkpoint.txt
[2025-11-28 02:18:26] -rw------- 1 boincer umatlas   1516240 Nov 28 02:18 agis_ddmendpoints.agis.ALL.json
[2025-11-28 02:18:26] -rw------- 1 boincer umatlas   2211591 Nov 28 02:18 log.47556173._001613.job.log.tgz.1
[2025-11-28 02:18:26] -rw------- 1 boincer umatlas      8647 Nov 28 02:18 heartbeat.json
[2025-11-28 02:18:26] -rw------- 1 boincer umatlas      4553 Nov 28 02:18 pilotlog.txt
[2025-11-28 02:18:26] -rw------- 1 boincer umatlas   8452654 Nov 28 02:18 log.47556173._001613.job.log.1
[2025-11-28 02:18:26] -rw------- 1 boincer umatlas       353 Nov 28 02:18 output.list
[2025-11-28 02:18:26] -rw-r--r-- 1 boincer umatlas       620 Nov 28 02:18 runtime_log
[2025-11-28 02:18:26] -rw------- 1 boincer umatlas  10680320 Nov 28 02:18 result.tar.gz
[2025-11-28 02:18:26] -rw-r--r-- 1 boincer umatlas      9418 Nov 28 02:18 runtime_log.err
[2025-11-28 02:18:26] -rw------- 1 boincer umatlas       790 Nov 28 02:18 9U6LDm6iXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRDKKDm30zs7n.diag
[2025-11-28 02:18:26] -rw-r--r-- 1 boincer umatlas     23308 Nov 28 02:18 stderr.txt
[2025-11-28 02:18:26] HITS file was successfully produced:
[2025-11-28 02:18:26] -rw------- 1 boincer umatlas 901455743 Nov 28 02:17 shared/HITS.pool.root.1
[2025-11-28 02:18:26]  *** Contents of shared directory: ***
[2025-11-28 02:18:26] total 1290224
[2025-11-28 02:18:26] -rw-r--r-- 3 boincer umatlas 408431927 Nov 26 21:29 ATLAS.root_0
[2025-11-28 02:18:26] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 21:29 start_atlas.sh
[2025-11-28 02:18:26] -rw-r--r-- 2 boincer umatlas    590113 Nov 26 21:29 input.tar.gz
[2025-11-28 02:18:26] -rw------- 1 boincer umatlas 901455743 Nov 28 02:17 HITS.pool.root.1
[2025-11-28 02:18:26] -rw------- 1 boincer umatlas  10680320 Nov 28 02:18 result.tar.gz
02:18:28 (45589): run_atlas exited; CPU time 473295.952769
02:18:28 (45589): called boinc_finish(0)

</stderr_txt>
]]>

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