Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:47:11 (2064036): wrapper (7.7.26015): starting
03:47:11 (2064036): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 03:47:11] Arguments: --nthreads 3
[2025-11-27 03:47:11] Threads: 3
[2025-11-27 03:47:11] Checking for CVMFS
[2025-11-27 03:47:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 03:47:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 03:47:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 03:47:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 03:47:11] 2.9.2.0 1917719 31 54464 153343 0 88 35807456 36864001 0 130560 0 438204 100.000 1364 9154 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 03:47:11] CVMFS is ok
[2025-11-27 03:47:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 03:47:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 03:47:11] Further information can be found at the LHC@home message board.
[2025-11-27 03:47:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 03:47:11] Checking for apptainer binary...
[2025-11-27 03:47:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 03:47:11] Running /usr/bin/apptainer --version
[2025-11-27 03:47:11] apptainer version 1.4.1-1.1
[2025-11-27 03:47:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 03:47:11] thA335
[2025-11-27 03:47:11] apptainer works
[2025-11-27 03:47:11] Set ATHENA_PROC_NUMBER=3
[2025-11-27 03:47:11] Set ATHENA_CORE_NUMBER=3
[2025-11-27 03:47:11] Starting ATLAS job with PandaID=6898120335
[2025-11-27 03:47:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:51:30]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:51:30] 2025-11-27 02:50:42,092 | INFO     | update_server=False
[2025-11-27 03:51:30] 2025-11-27 02:50:42,092 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:51:30] 2025-11-27 02:50:42,093 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:51:30] 2025-11-27 02:50:42,093 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:51:30] 2025-11-27 02:50:42,093 | INFO     | aborting loop
[2025-11-27 03:51:30] 2025-11-27 02:50:42,815 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:51:30] 2025-11-27 02:50:42,890 | INFO     | all job control threads have been joined
[2025-11-27 03:51:30] 2025-11-27 02:50:43,077 | INFO     | all data control threads have been joined
[2025-11-27 03:51:30] 2025-11-27 02:50:43,098 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:51:30] 2025-11-27 02:50:43,099 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:51:30] 2025-11-27 02:50:43,100 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:51:30] 2025-11-27 02:50:43,306 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:51:30] 2025-11-27 02:50:43,506 | INFO     | all payload control threads have been joined
[2025-11-27 03:51:30] 2025-11-27 02:50:43,507 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:51:30] 2025-11-27 02:50:43,746 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:51:30] 2025-11-27 02:50:43,805 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:51:30] 2025-11-27 02:50:43,896 | INFO     | [job] control thread has finished
[2025-11-27 03:51:30] 2025-11-27 02:50:44,083 | INFO     | [data] control thread has finished
[2025-11-27 03:51:30] 2025-11-27 02:50:44,384 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:51:30] 2025-11-27 02:50:44,428 | INFO     | [job] validate thread has finished
[2025-11-27 03:51:30] 2025-11-27 02:50:44,500 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:51:30] 2025-11-27 02:50:44,512 | INFO     | [payload] control thread has finished
[2025-11-27 03:51:30] 2025-11-27 02:50:44,560 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:51:30] 2025-11-27 02:50:44,821 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:51:30] 2025-11-27 02:50:45,119 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:51:30] 2025-11-27 02:50:49,126 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:51:30] 2025-11-27 02:51:12,121 | INFO     | PID=2067766 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 03:51:30] 2025-11-27 02:51:12,121 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:51:30] 2025-11-27 02:51:12,121 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:51:30] 2025-11-27 02:51:12,121 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:51:30] 2025-11-27 02:51:23,247 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:51:30] 2025-11-27 02:51:24,994 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140219649517376)>', '<ExcThread(monitor, started 140219290457856)>']
[2025-11-27 03:51:30] 2025-11-27 02:51:25,188 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:51:30] 2025-11-27 02:51:25,188 | INFO     | [monitor] control thread has ended
[2025-11-27 03:51:30] 2025-11-27 02:51:30,020 | INFO     | all workflow threads have been joined
[2025-11-27 03:51:30] 2025-11-27 02:51:30,021 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:51:30] 2025-11-27 02:51:30,022 | INFO     | traces error code: 0
[2025-11-27 03:51:30] 2025-11-27 02:51:30,022 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:51:30] 2025-11-27 02:51:30,068 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:51:30] 2025-11-27 02:51:30,071 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:51:30] 2025-11-27 02:51:30,074 [wrapper] pilotpid: 2067766
[2025-11-27 03:51:30] 2025-11-27 02:51:30,077 [wrapper] Pilot exit status: 0
[2025-11-27 03:51:30] 2025-11-27 02:51:30,084 [wrapper] pandaids: 6898120335
[2025-11-27 03:51:30] 2025-11-27 02:51:30,101 [wrapper] cleanup supervisor_pilot 2067772 2067767
[2025-11-27 03:51:30] 2025-11-27 02:51:30,104 [wrapper] Test setup, not cleaning
[2025-11-27 03:51:30] 2025-11-27 02:51:30,107 [wrapper] apfmon messages muted
[2025-11-27 03:51:30] 2025-11-27 02:51:30,110 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:51:30] 2025-11-27 02:51:30,113 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:51:30]  *** Error codes and diagnostics ***
[2025-11-27 03:51:30]     "exeErrorCode": 65,
[2025-11-27 03:51:30]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 03:51:30]     "pilotErrorCode": 1305,
[2025-11-27 03:51:30]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 03:51:30]  *** Listing of results directory ***
[2025-11-27 03:51:30] total 405768
[2025-11-27 03:51:30] -rw-r--r-- 1 boinc boinc    576529 Nov 26 03:38 pilot3.tar.gz
[2025-11-27 03:51:30] -rw-r--r-- 1 boinc boinc      5112 Nov 26 04:26 queuedata.json
[2025-11-27 03:51:30] -rwx------ 1 boinc boinc     36292 Nov 26 04:27 runpilot2-wrapper.sh
[2025-11-27 03:51:30] -rw-r--r-- 1 boinc boinc       100 Nov 27 03:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:51:30] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 03:47 run_atlas
[2025-11-27 03:51:30] -rw-r--r-- 1 boinc boinc       105 Nov 27 03:47 job.xml
[2025-11-27 03:51:30] -rw-r--r-- 2 boinc boinc 411311522 Nov 27 03:47 EVNT.47483658._002422.pool.root.1
[2025-11-27 03:51:30] -rw-r--r-- 2 boinc boinc    590108 Nov 27 03:47 input.tar.gz
[2025-11-27 03:51:30] -rw-r--r-- 2 boinc boinc     15847 Nov 27 03:47 start_atlas.sh
[2025-11-27 03:51:30] drwxrwx--x 2 boinc boinc      4096 Nov 27 03:47 shared
[2025-11-27 03:51:30] -rw-r--r-- 1 boinc boinc         0 Nov 27 03:47 boinc_setup_complete
[2025-11-27 03:51:30] -rw-r--r-- 1 boinc boinc      6196 Nov 27 03:47 init_data.xml
[2025-11-27 03:51:30] -rw-r--r-- 1 boinc boinc         0 Nov 27 03:47 boinc_lockfile
[2025-11-27 03:51:30] -rw-r--r-- 1 boinc boinc      2785 Nov 27 03:47 pandaJob.out
[2025-11-27 03:51:30] -rw------- 1 boinc boinc    991554 Nov 27 03:47 agis_schedconf.cvmfs.json
[2025-11-27 03:51:30] -rw------- 1 boinc boinc   1516240 Nov 27 03:47 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:51:30] drwx------ 5 boinc boinc      4096 Nov 27 03:47 pilot3
[2025-11-27 03:51:30] -rw-r--r-- 1 boinc boinc       523 Nov 27 03:48 boinc_task_state.xml
[2025-11-27 03:51:30] -rw------- 1 boinc boinc       959 Nov 27 03:48 memory_monitor_summary.json
[2025-11-27 03:51:30] -rw------- 1 boinc boinc     55737 Nov 27 03:48 log.47556161._004045.job.log.tgz.1
[2025-11-27 03:51:30] -rw------- 1 boinc boinc        95 Nov 27 03:50 pilot_heartbeat.json
[2025-11-27 03:51:30] -rw------- 1 boinc boinc      8412 Nov 27 03:50 heartbeat.json
[2025-11-27 03:51:30] -rw-r--r-- 1 boinc boinc      8192 Nov 27 03:51 boinc_mmap_file
[2025-11-27 03:51:30] -rw-r--r-- 1 boinc boinc        23 Nov 27 03:51 wrapper_checkpoint.txt
[2025-11-27 03:51:30] -rw------- 1 boinc boinc      4752 Nov 27 03:51 pilotlog.txt
[2025-11-27 03:51:30] -rw------- 1 boinc boinc     93790 Nov 27 03:51 log.47556161._004045.job.log.1
[2025-11-27 03:51:30] -rw------- 1 boinc boinc       186 Nov 27 03:51 output.list
[2025-11-27 03:51:30] -rw-r--r-- 1 boinc boinc       620 Nov 27 03:51 runtime_log
[2025-11-27 03:51:30] -rw------- 1 boinc boinc    174080 Nov 27 03:51 result.tar.gz
[2025-11-27 03:51:30] -rw-r--r-- 1 boinc boinc      8744 Nov 27 03:51 runtime_log.err
[2025-11-27 03:51:30] -rw------- 1 boinc boinc       649 Nov 27 03:51 YbULDmiMLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWoMKDm3XpJfn.diag
[2025-11-27 03:51:30] -rw-r--r-- 1 boinc boinc      7787 Nov 27 03:51 stderr.txt
[2025-11-27 03:51:30] No HITS result produced
[2025-11-27 03:51:30]  *** Contents of shared directory: ***
[2025-11-27 03:51:30] total 402444
[2025-11-27 03:51:30] -rw-r--r-- 2 boinc boinc 411311522 Nov 27 03:47 ATLAS.root_0
[2025-11-27 03:51:30] -rw-r--r-- 2 boinc boinc    590108 Nov 27 03:47 input.tar.gz
[2025-11-27 03:51:30] -rw-r--r-- 2 boinc boinc     15847 Nov 27 03:47 start_atlas.sh
[2025-11-27 03:51:30] -rw------- 1 boinc boinc    174080 Nov 27 03:51 result.tar.gz
03:51:31 (2064036): run_atlas exited; CPU time 31.928076
03:51:31 (2064036): called boinc_finish(0)

</stderr_txt>
]]>

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