Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
11:41:03 (1451828): wrapper (7.7.26015): starting
11:41:03 (1451828): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 11:41:03] Arguments: --nthreads 8
[2025-11-27 11:41:03] Threads: 8
[2025-11-27 11:41:03] Checking for CVMFS
[2025-11-27 11:41:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 11:41:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 11:41:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 11:41:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 11:41:04] 2.13.2.0 1350838 621 45848 153362 0 81 3619309 4096000 0 130560 0 268835 99.985 27587 741 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-27 11:41:04] CVMFS is ok
[2025-11-27 11:41:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 11:41:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 11:41:04] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-27 11:41:04] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-27 11:41:04] Further information can be found at the LHC@home message board.
[2025-11-27 11:41:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 11:41:04] Checking for apptainer binary...
[2025-11-27 11:41:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 11:41:04] Running /usr/bin/apptainer --version
[2025-11-27 11:41:04] apptainer version 1.4.3
[2025-11-27 11:41:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 11:41:04] lab01ubuntu
[2025-11-27 11:41:04] apptainer works
[2025-11-27 11:41:04] Set ATHENA_PROC_NUMBER=8
[2025-11-27 11:41:04] Set ATHENA_CORE_NUMBER=8
[2025-11-27 11:41:04] Starting ATLAS job with PandaID=6898120333
[2025-11-27 11:41:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:44:09]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:44:09] 2025-11-27 21:43:30,058 | INFO     | monitor loop #2732: job 0:6898120333 is in state 'finished'
[2025-11-27 21:44:09] 2025-11-27 21:43:30,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:44:09] 2025-11-27 21:43:31,138 | INFO     | time since job start (36108s) is within the limit (172800.0s)
[2025-11-27 21:44:09] 2025-11-27 21:43:32,562 | INFO     | monitor loop #2733: job 0:6898120333 is in state 'finished'
[2025-11-27 21:44:09] 2025-11-27 21:43:32,563 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:44:09] 2025-11-27 21:43:33,144 | INFO     | time since job start (36110s) is within the limit (172800.0s)
[2025-11-27 21:44:09] 2025-11-27 21:43:35,066 | INFO     | monitor loop #2734: job 0:6898120333 is in state 'finished'
[2025-11-27 21:44:09] 2025-11-27 21:43:35,067 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:44:09] 2025-11-27 21:43:35,151 | INFO     | time since job start (36112s) is within the limit (172800.0s)
[2025-11-27 21:44:09] 2025-11-27 21:43:35,510 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 21:44:09] 2025-11-27 21:43:35,513 | INFO     | found 8 cores (8 cores per socket, 1 socket) , CPU MHz: 2893.0279999999993
[2025-11-27 21:44:09] 2025-11-27 21:43:35,518 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6898120333/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 21:44:09] 2025-11-27 21:43:35,520 | INFO     | extracted standard info from prmon json
[2025-11-27 21:44:09] 2025-11-27 21:43:35,521 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 21:44:09] 2025-11-27 21:43:35,521 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 21:44:09] 2025-11-27 21:43:35,547 | INFO     | fitting pss+swap vs Time
[2025-11-27 21:44:09] 2025-11-27 21:43:35,550 | INFO     | sum of square deviations: 64008790840.0
[2025-11-27 21:44:09] 2025-11-27 21:43:35,572 | INFO     | sum of deviations: 664823553519.0004
[2025-11-27 21:44:09] 2025-11-27 21:43:35,573 | INFO     | mean x: 1764261762.0
[2025-11-27 21:44:09] 2025-11-27 21:43:35,573 | INFO     | mean y: 2855175.3874788494
[2025-11-27 21:44:09] 2025-11-27 21:43:35,574 | INFO     | intersect: -18321546185.082478
[2025-11-27 21:44:09] 2025-11-27 21:43:35,576 | INFO     | chi2: 13.158328745674604
[2025-11-27 21:44:09] 2025-11-27 21:43:35,578 | INFO     | sum of square deviations: 62397904822.5
[2025-11-27 21:44:09] 2025-11-27 21:43:35,598 | INFO     | sum of deviations: 847018544967.5002
[2025-11-27 21:44:09] 2025-11-27 21:43:35,599 | INFO     | mean x: 1764261609.5
[2025-11-27 21:44:09] 2025-11-27 21:43:35,599 | INFO     | mean y: 2872427.5887372014
[2025-11-27 21:44:09] 2025-11-27 21:43:35,600 | INFO     | intersect: -23946045499.569923
[2025-11-27 21:44:09] 2025-11-27 21:43:35,602 | INFO     | chi2: 10.365985537216947
[2025-11-27 21:44:09] 2025-11-27 21:43:35,602 | INFO     | current chi2=10.365985537216947 (change=21.22110841299321 %)
[2025-11-27 21:44:09] 2025-11-27 21:43:35,603 | INFO     | right removable region: 585
[2025-11-27 21:44:09] 2025-11-27 21:43:35,605 | INFO     | sum of square deviations: 62397904822.5
[2025-11-27 21:44:09] 2025-11-27 21:43:35,625 | INFO     | sum of deviations: 452737918916.9999
[2025-11-27 21:44:09] 2025-11-27 21:43:35,626 | INFO     | mean x: 1764261914.5
[2025-11-27 21:44:09] 2025-11-27 21:43:35,626 | INFO     | mean y: 2875243.068259386
[2025-11-27 21:44:09] 2025-11-27 21:43:35,627 | INFO     | intersect: -12798007572.907831
[2025-11-27 21:44:09] 2025-11-27 21:43:35,629 | INFO     | chi2: 9.707535212460147
[2025-11-27 21:44:09] 2025-11-27 21:43:35,629 | INFO     | current chi2=9.707535212460147 (change=26.22516582395617 %)
[2025-11-27 21:44:09] 2025-11-27 21:43:35,631 | INFO     | sum of square deviations: 60814275130.0
[2025-11-27 21:44:09] 2025-11-27 21:43:35,652 | INFO     | sum of deviations: 286968689993.99994
[2025-11-27 21:44:09] 2025-11-27 21:43:35,652 | INFO     | mean x: 1764262067.0
[2025-11-27 21:44:09] 2025-11-27 21:43:35,652 | INFO     | mean y: 2891203.342512909
[2025-11-27 21:44:09] 2025-11-27 21:43:35,653 | INFO     | intersect: -8322258986.984134
[2025-11-27 21:44:09] 2025-11-27 21:43:35,655 | INFO     | chi2: 7.7426393061955565
[2025-11-27 21:44:09] 2025-11-27 21:43:35,655 | INFO     | current chi2=7.7426393061955565 (change=20.24093514224435 %)
[2025-11-27 21:44:09] 2025-11-27 21:43:35,656 | INFO     | left removable region: 20
[2025-11-27 21:44:09] 2025-11-27 21:43:35,658 | INFO     | sum of square deviations: 55927113730.0
[2025-11-27 21:44:09] 2025-11-27 21:43:35,678 | INFO     | sum of deviations: 358057722529.9999
[2025-11-27 21:44:09] 2025-11-27 21:43:35,679 | INFO     | mean x: 1764262189.0
[2025-11-27 21:44:09] 2025-11-27 21:43:35,679 | INFO     | mean y: 2929178.277876106
[2025-11-27 21:44:09] 2025-11-27 21:43:35,680 | INFO     | intersect: -11292266643.713495
[2025-11-27 21:44:09] 2025-11-27 21:43:35,682 | INFO     | chi2: 2.818947407282495
[2025-11-27 21:44:09] 2025-11-27 21:43:35,682 | INFO     | current memory leak: 6.40 B/s (using 565 data points, chi2=2.82)
[2025-11-27 21:44:09] 2025-11-27 21:43:35,682 | INFO     | could have reported an average CPU frequency of 2893 MHz (23 samples)
[2025-11-27 21:44:09] 2025-11-27 21:43:35,682 | INFO     | ..............................
[2025-11-27 21:44:09] 2025-11-27 21:43:35,683 | INFO     | . Timing measurements:
[2025-11-27 21:44:09] 2025-11-27 21:43:35,683 | INFO     | . get job = 0 s
[2025-11-27 21:44:09] 2025-11-27 21:43:35,683 | INFO     | . initial setup = 6 s
[2025-11-27 21:44:09] 2025-11-27 21:43:35,683 | INFO     | . payload setup = 18 s
[2025-11-27 21:44:09] 2025-11-27 21:43:35,683 | INFO     | . stage-in = 0 s
[2025-11-27 21:44:09] 2025-11-27 21:43:35,683 | INFO     | . payload execution = 36031 s
[2025-11-27 21:44:09] 2025-11-27 21:43:35,683 | INFO     | . stage-out = 4 s
[2025-11-27 21:44:09] 2025-11-27 21:43:35,683 | INFO     | . log creation = 0 s
[2025-11-27 21:44:09] 2025-11-27 21:43:35,684 | INFO     | ..............................
[2025-11-27 21:44:09] 2025-11-27 21:43:35,771 | INFO     | 
[2025-11-27 21:44:09] 2025-11-27 21:43:35,771 | INFO     | job summary report
[2025-11-27 21:44:09] 2025-11-27 21:43:35,772 | INFO     | --------------------------------------------------
[2025-11-27 21:44:09] 2025-11-27 21:43:35,772 | INFO     | PanDA job id: 6898120333
[2025-11-27 21:44:09] 2025-11-27 21:43:35,772 | INFO     | task id: 47556161
[2025-11-27 21:44:09] 2025-11-27 21:43:35,772 | INFO     | errors: (none)
[2025-11-27 21:44:09] 2025-11-27 21:43:35,773 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 21:44:09] 2025-11-27 21:43:35,773 | INFO     | pilot state: finished 
[2025-11-27 21:44:09] 2025-11-27 21:43:35,773 | INFO     | transexitcode: 0
[2025-11-27 21:44:09] 2025-11-27 21:43:35,773 | INFO     | exeerrorcode: 0
[2025-11-27 21:44:09] 2025-11-27 21:43:35,774 | INFO     | exeerrordiag: 
[2025-11-27 21:44:09] 2025-11-27 21:43:35,774 | INFO     | exitcode: 0
[2025-11-27 21:44:09] 2025-11-27 21:43:35,774 | INFO     | exitmsg: OK
[2025-11-27 21:44:09] 2025-11-27 21:43:35,774 | INFO     | cpuconsumptiontime: 275149 s
[2025-11-27 21:44:09] 2025-11-27 21:43:35,775 | INFO     | nevents: 1000
[2025-11-27 21:44:09] 2025-11-27 21:43:35,775 | INFO     | neventsw: 0
[2025-11-27 21:44:09] 2025-11-27 21:43:35,775 | INFO     | pid: 1461978
[2025-11-27 21:44:09] 2025-11-27 21:43:35,775 | INFO     | pgrp: 1461978
[2025-11-27 21:44:09] 2025-11-27 21:43:35,776 | INFO     | corecount: 8
[2025-11-27 21:44:09] 2025-11-27 21:43:35,776 | INFO     | event service: False
[2025-11-27 21:44:09] 2025-11-27 21:43:35,776 | INFO     | sizes: {0: 2283436, 2: 2284128, 3: 2284327, 14: 2284617, 25: 2284617, 36054: 2326367, 36055: 2326494, 36059: 2335558, 36062: 2335614, 36077: 2335860}
[2025-11-27 21:44:09] 2025-11-27 21:43:35,776 | INFO     | --------------------------------------------------
[2025-11-27 21:44:09] 2025-11-27 21:43:35,777 | INFO     | 
[2025-11-27 21:44:09] 2025-11-27 21:43:35,777 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-11-27 21:44:09] 2025-11-27 21:43:35,840 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,842 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,842 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,843 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,843 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,843 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,844 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,844 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,844 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,845 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,845 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,845 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,846 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,846 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,846 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,846 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,847 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,847 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:44:09] 2025-11-27 21:43:35,848 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,848 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:44:09] 2025-11-27 21:43:35,851 | INFO     | job 6898120333 has completed (purged errors)
[2025-11-27 21:44:09] 2025-11-27 21:43:35,852 | INFO     | overall cleanup function is called
[2025-11-27 21:44:09] 2025-11-27 21:43:36,347 | INFO     | PID=1455559 has CPU usage=14.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 21:44:09] 2025-11-27 21:43:36,887 | INFO     | --- collectZombieJob: --- 10, [1461978]
[2025-11-27 21:44:09] 2025-11-27 21:43:36,888 | INFO     | zombie collector waiting for pid 1461978
[2025-11-27 21:44:09] 2025-11-27 21:43:36,889 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:44:09] 2025-11-27 21:43:36,889 | INFO     | collected zombie processes
[2025-11-27 21:44:09] 2025-11-27 21:43:36,889 | INFO     | will attempt to kill all subprocesses of pid=1461978
[2025-11-27 21:44:09] 2025-11-27 21:43:37,060 | INFO     | process IDs to be killed: [1461978] (in reverse order)
[2025-11-27 21:44:09] 2025-11-27 21:43:37,136 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:44:09] 2025-11-27 21:43:37,137 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:44:09] 2025-11-27 21:43:37,139 | INFO     | did not find any defunct processes belonging to 1461978
[2025-11-27 21:44:09] 2025-11-27 21:43:37,141 | INFO     | did not find any defunct processes belonging to 1461978
[2025-11-27 21:44:09] 2025-11-27 21:43:37,143 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:44:09] 2025-11-27 21:43:37,143 | INFO     | ready for new job
[2025-11-27 21:44:09] 2025-11-27 21:43:37,143 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:44:09] 2025-11-27 21:43:37,149 | INFO     | ***************************************
[2025-11-27 21:44:09] 2025-11-27 21:43:37,149 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:44:09] 2025-11-27 21:43:37,149 | INFO     | ***************************************
[2025-11-27 21:44:09] 2025-11-27 21:43:37,149 | INFO     | 
[2025-11-27 21:44:09] 2025-11-27 21:43:37,150 | INFO     | pilot is running in a VM
[2025-11-27 21:44:09] 2025-11-27 21:43:37,150 | INFO     | architecture information:
[2025-11-27 21:44:09] 2025-11-27 21:43:37,152 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:44:09] 2025-11-27 21:43:37,179 | INFO     | cat /etc/os-release:
[2025-11-27 21:44:09] NAME="CentOS Linux"
[2025-11-27 21:44:09] VERSION="7 (Core)"
[2025-11-27 21:44:09] ID="centos"
[2025-11-27 21:44:09] ID_LIKE="rhel fedora"
[2025-11-27 21:44:09] VERSION_ID="7"
[2025-11-27 21:44:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:44:09] ANSI_COLOR="0;31"
[2025-11-27 21:44:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:44:09] HOME_URL="https://www.centos.org/"
[2025-11-27 21:44:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:44:09] 
[2025-11-27 21:44:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:44:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:44:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:44:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:44:09] 
[2025-11-27 21:44:09] 2025-11-27 21:43:37,179 | INFO     | ***************************************
[2025-11-27 21:44:09] 2025-11-27 21:43:37,683 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-11-27 21:44:09] 2025-11-27 21:43:37,719 | INFO     | sufficient remaining disk space (14028898304 B)
[2025-11-27 21:44:09] 2025-11-27 21:43:37,720 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:44:09] 2025-11-27 21:43:37,721 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:44:09] 2025-11-27 21:43:37,721 | INFO     | update_server=False
[2025-11-27 21:44:09] 2025-11-27 21:43:37,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:44:09] 2025-11-27 21:43:37,722 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:44:09] 2025-11-27 21:43:37,963 | INFO     | all data control threads have been joined
[2025-11-27 21:44:09] 2025-11-27 21:43:38,379 | INFO     | all job control threads have been joined
[2025-11-27 21:44:09] 2025-11-27 21:43:38,578 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:44:09] 2025-11-27 21:43:38,579 | INFO     | aborting loop
[2025-11-27 21:44:09] 2025-11-27 21:43:38,640 | INFO     | all payload control threads have been joined
[2025-11-27 21:44:09] 2025-11-27 21:43:38,728 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:44:09] 2025-11-27 21:43:38,729 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:44:09] 2025-11-27 21:43:38,793 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:44:09] 2025-11-27 21:43:38,811 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:44:09] 2025-11-27 21:43:38,970 | INFO     | [data] control thread has finished
[2025-11-27 21:44:09] 2025-11-27 21:43:39,013 | INFO     | [job] validate thread has finished
[2025-11-27 21:44:09] 2025-11-27 21:43:39,086 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:44:09] 2025-11-27 21:43:39,183 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:44:09] 2025-11-27 21:43:39,385 | INFO     | [job] control thread has finished
[2025-11-27 21:44:09] 2025-11-27 21:43:39,494 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:44:09] 2025-11-27 21:43:39,497 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:44:09] 2025-11-27 21:43:39,532 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:44:09] 2025-11-27 21:43:39,585 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:44:09] 2025-11-27 21:43:39,647 | INFO     | [payload] control thread has finished
[2025-11-27 21:44:09] 2025-11-27 21:43:39,870 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:44:09] 2025-11-27 21:43:40,779 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:44:09] 2025-11-27 21:43:41,093 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:44:09] 2025-11-27 21:43:42,328 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:44:09] 2025-11-27 21:43:44,786 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:44:09] 2025-11-27 21:43:45,602 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131438245246784)>', '<ExcThread(monitor, started 131437516801792)>']
[2025-11-27 21:44:09] 2025-11-27 21:43:50,628 | INFO     | all workflow threads have been joined
[2025-11-27 21:44:09] 2025-11-27 21:43:50,628 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:44:09] 2025-11-27 21:43:50,629 | INFO     | traces error code: 0
[2025-11-27 21:44:09] 2025-11-27 21:43:50,630 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:44:09] 2025-11-27 21:44:08,576 | INFO     | PID=1455559 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 21:44:09] 2025-11-27 21:44:08,578 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:44:09] 2025-11-27 21:44:08,578 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:44:09] 2025-11-27 21:44:08,578 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:44:09] 2025-11-27 21:44:08,578 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:44:09] 2025-11-27 21:44:08,578 | INFO     | [monitor] control thread has ended
[2025-11-27 21:44:09] 2025-11-27 21:44:08,870 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:44:09] 2025-11-27 21:44:08,879 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:44:09] 2025-11-27 21:44:08,888 [wrapper] pilotpid: 1455559
[2025-11-27 21:44:09] 2025-11-27 21:44:08,896 [wrapper] Pilot exit status: 0
[2025-11-27 21:44:09] 2025-11-27 21:44:08,927 [wrapper] pandaids: 6898120333
[2025-11-27 21:44:09] 2025-11-27 21:44:09,006 [wrapper] cleanup supervisor_pilot 1525665 1455560
[2025-11-27 21:44:09] 2025-11-27 21:44:09,015 [wrapper] Test setup, not cleaning
[2025-11-27 21:44:09] 2025-11-27 21:44:09,023 [wrapper] apfmon messages muted
[2025-11-27 21:44:09] 2025-11-27 21:44:09,030 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:44:09] 2025-11-27 21:44:09,038 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:44:09]  *** Error codes and diagnostics ***
[2025-11-27 21:44:09]     "exeErrorCode": 0,
[2025-11-27 21:44:09]     "exeErrorDiag": "",
[2025-11-27 21:44:09]     "pilotErrorCode": 0,
[2025-11-27 21:44:09]     "pilotErrorDiag": "",
[2025-11-27 21:44:09]  *** Listing of results directory ***
[2025-11-27 21:44:09] total 1315064
[2025-11-27 21:44:09] -rw-r--r-- 1 boinc boinc    576529 Nov 26 02:38 pilot3.tar.gz
[2025-11-27 21:44:09] -rw-r--r-- 1 boinc boinc      5112 Nov 26 03:26 queuedata.json
[2025-11-27 21:44:09] -rwx------ 1 boinc boinc     36292 Nov 26 03:27 runpilot2-wrapper.sh
[2025-11-27 21:44:09] -rw-r--r-- 1 boinc boinc       100 Nov 27 11:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:44:09] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 11:41 run_atlas
[2025-11-27 21:44:09] -rw-r--r-- 1 boinc boinc       105 Nov 27 11:41 job.xml
[2025-11-27 21:44:09] -rw-r--r-- 2 boinc boinc 411311522 Nov 27 11:41 EVNT.47483658._002422.pool.root.1
[2025-11-27 21:44:09] -rw-r--r-- 1 boinc boinc      6316 Nov 27 11:41 init_data.xml
[2025-11-27 21:44:09] -rw-r--r-- 2 boinc boinc     15847 Nov 27 11:41 start_atlas.sh
[2025-11-27 21:44:09] drwxrwx--x 2 boinc boinc      4096 Nov 27 11:41 shared
[2025-11-27 21:44:09] -rw-r--r-- 2 boinc boinc    590109 Nov 27 11:41 input.tar.gz
[2025-11-27 21:44:09] -rw-r--r-- 1 boinc boinc         0 Nov 27 11:41 boinc_lockfile
[2025-11-27 21:44:09] -rw-r--r-- 1 boinc boinc      2785 Nov 27 11:41 pandaJob.out
[2025-11-27 21:44:09] -rw------- 1 boinc boinc    991572 Nov 27 11:41 agis_schedconf.cvmfs.json
[2025-11-27 21:44:09] drwx------ 5 boinc boinc      4096 Nov 27 11:41 pilot3
[2025-11-27 21:44:09] -rw-r--r-- 1 boinc boinc       532 Nov 27 21:29 boinc_task_state.xml
[2025-11-27 21:44:09] -rw------- 1 boinc boinc 917407679 Nov 27 21:42 HITS.47556161._004043.pool.root.1
[2025-11-27 21:44:09] -rw------- 1 boinc boinc      1030 Nov 27 21:43 memory_monitor_summary.json
[2025-11-27 21:44:09] -rw------- 1 boinc boinc   1516240 Nov 27 21:43 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:44:09] -rw------- 1 boinc boinc   1867917 Nov 27 21:43 log.47556161._004043.job.log.tgz.1
[2025-11-27 21:44:09] -rw------- 1 boinc boinc      8590 Nov 27 21:43 heartbeat.json
[2025-11-27 21:44:09] -rw-r--r-- 1 boinc boinc        29 Nov 27 21:44 wrapper_checkpoint.txt
[2025-11-27 21:44:09] -rw-r--r-- 1 boinc boinc      8192 Nov 27 21:44 boinc_mmap_file
[2025-11-27 21:44:09] -rw------- 1 boinc boinc        95 Nov 27 21:44 pilot_heartbeat.json
[2025-11-27 21:44:09] -rw------- 1 boinc boinc       747 Nov 27 21:44 pilotlog.txt
[2025-11-27 21:44:09] -rw------- 1 boinc boinc   5125746 Nov 27 21:44 log.47556161._004043.job.log.1
[2025-11-27 21:44:09] -rw------- 1 boinc boinc       353 Nov 27 21:44 output.list
[2025-11-27 21:44:09] -rw-r--r-- 1 boinc boinc       620 Nov 27 21:44 runtime_log
[2025-11-27 21:44:09] -rw------- 1 boinc boinc   7014400 Nov 27 21:44 result.tar.gz
[2025-11-27 21:44:09] -rw------- 1 boinc boinc       656 Nov 27 21:44 UISLDmiMLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUoMKDmJmf7Hn.diag
[2025-11-27 21:44:09] -rw-r--r-- 1 boinc boinc      8904 Nov 27 21:44 runtime_log.err
[2025-11-27 21:44:09] -rw-r--r-- 1 boinc boinc     21808 Nov 27 21:44 stderr.txt
[2025-11-27 21:44:09] HITS file was successfully produced:
[2025-11-27 21:44:09] -rw------- 1 boinc boinc 917407679 Nov 27 21:42 shared/HITS.pool.root.1
[2025-11-27 21:44:09]  *** Contents of shared directory: ***
[2025-11-27 21:44:09] total 1305036
[2025-11-27 21:44:09] -rw-r--r-- 2 boinc boinc 411311522 Nov 27 11:41 ATLAS.root_0
[2025-11-27 21:44:09] -rw-r--r-- 2 boinc boinc     15847 Nov 27 11:41 start_atlas.sh
[2025-11-27 21:44:09] -rw-r--r-- 2 boinc boinc    590109 Nov 27 11:41 input.tar.gz
[2025-11-27 21:44:09] -rw------- 1 boinc boinc 917407679 Nov 27 21:42 HITS.pool.root.1
[2025-11-27 21:44:09] -rw------- 1 boinc boinc   7014400 Nov 27 21:44 result.tar.gz
21:44:11 (1451828): run_atlas exited; CPU time 274805.753461
21:44:11 (1451828): called boinc_finish(0)

</stderr_txt>
]]>

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