Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:32:23 (499662): wrapper (7.7.26015): starting
18:32:23 (499662): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 18:32:23] Arguments: --nthreads 12
[2025-11-26 18:32:23] Threads: 12
[2025-11-26 18:32:23] Checking for CVMFS
[2025-11-26 18:32:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:32:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:32:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:32:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:32:23] 2.11.5.0 158711 29130 215372 153343 3 398 24166495 45568000 17772 130560 0 250259023 99.788 163971634 29943 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 18:32:23] CVMFS is ok
[2025-11-26 18:32:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:32:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:32:23] Further information can be found at the LHC@home message board.
[2025-11-26 18:32:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:32:23] Checking for apptainer binary...
[2025-11-26 18:32:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:32:23] Running /usr/bin/apptainer --version
[2025-11-26 18:32:24] apptainer version 1.4.1-1.el9
[2025-11-26 18:32:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:32:24] wns0067.triumf.lcg
[2025-11-26 18:32:24] apptainer works
[2025-11-26 18:32:24] Set ATHENA_PROC_NUMBER=12
[2025-11-26 18:32:24] Set ATHENA_CORE_NUMBER=12
[2025-11-26 18:32:24] Starting ATLAS job with PandaID=6898378207
[2025-11-26 18:32:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:36:38]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:36:38] 2025-11-27 02:35:42,034 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 18:36:38] 2025-11-27 02:35:42,035 | WARNING  | wrong length of table data, x=[1764210775.0], y=[693.0] (must be same and length>=4)
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | could have reported an average CPU frequency of 2671 MHz (4 samples)
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | ..............................
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . Timing measurements:
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . get job = 0 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . initial setup = 2 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . payload setup = 4 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . stage-in = 0 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . payload execution = 45 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . stage-out = 0 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . log creation = 0 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | ..............................
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898378207/pilotlog.txt
[2025-11-26 18:36:38] 2025-11-27 02:35:42,045 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 18:36:38] - Log from pilotlog.txt -
[2025-11-26 18:36:38] 2025-11-27 02:35:42,033 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898378207/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:36:38] 2025-11-27 02:35:42,034 | INFO     | extracted standard info from prmon json
[2025-11-26 18:36:38] 2025-11-27 02:35:42,034 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:36:38] 2025-11-27 02:35:42,034 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:36:38] 2025-11-27 02:35:42,034 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 18:36:38] 2025-11-27 02:35:42,034 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 18:36:38] 2025-11-27 02:35:42,035 | WARNING  | wrong length of table data, x=[1764210775.0], y=[693.0] (must be same and length>=4)
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | could have reported an average CPU frequency of 2671 MHz (4 samples)
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | ..............................
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . Timing measurements:
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . get job = 0 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . initial setup = 2 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . payload setup = 4 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . stage-in = 0 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . payload execution = 45 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . stage-out = 0 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . log creation = 0 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | ..............................
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898378207/pilotlog.txt
[2025-11-26 18:36:38] 2025-11-27 02:35:42,046 | WARNING  | 
[2025-11-26 18:36:38] [begin log extracts]
[2025-11-26 18:36:38] - Log from pilotlog.txt -
[2025-11-26 18:36:38] 2025-11-27 02:35:42,033 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898378207/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:36:38] 2025-11-27 02:35:42,034 | INFO     | extracted standard info from prmon json
[2025-11-26 18:36:38] 2025-11-27 02:35:42,034 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:36:38] 2025-11-27 02:35:42,034 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:36:38] 2025-11-27 02:35:42,034 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 18:36:38] 2025-11-27 02:35:42,034 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 18:36:38] 2025-11-27 02:35:42,035 | WARNING  | wrong length of table data, x=[1764210775.0], y=[693.0] (must be same and length>=4)
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | could have reported an average CPU frequency of 2671 MHz (4 samples)
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | ..............................
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . Timing measurements:
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . get job = 0 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . initial setup = 2 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . payload setup = 4 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . stage-in = 0 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . payload execution = 45 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . stage-out = 0 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | . log creation = 0 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | ..............................
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 18:36:38] 2025-11-27 02:35:42,036 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898378207/pilotlog.txt
[2025-11-26 18:36:38] [end log extracts]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,046 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 18:36:38] 2025-11-27 02:35:42,046 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 18:36:38] 2025-11-27 02:35:42,101 | INFO     | 
[2025-11-26 18:36:38] 2025-11-27 02:35:42,101 | INFO     | job summary report
[2025-11-26 18:36:38] 2025-11-27 02:35:42,101 | INFO     | --------------------------------------------------
[2025-11-26 18:36:38] 2025-11-27 02:35:42,101 | INFO     | PanDA job id: 6898378207
[2025-11-26 18:36:38] 2025-11-27 02:35:42,101 | INFO     | task id: 47556161
[2025-11-26 18:36:38] 2025-11-27 02:35:42,101 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 18:33:33,435 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 18:36:38] 2025-11-27 02:35:42,101 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 18:36:38] 2025-11-27 02:35:42,101 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:36:38] 2025-11-27 02:35:42,101 | INFO     | pilot state: failed 
[2025-11-26 18:36:38] 2025-11-27 02:35:42,101 | INFO     | transexitcode: 65
[2025-11-26 18:36:38] 2025-11-27 02:35:42,101 | INFO     | exeerrorcode: 65
[2025-11-26 18:36:38] 2025-11-27 02:35:42,102 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 18:36:38] 2025-11-27 02:35:42,102 | INFO     | exitcode: 65
[2025-11-26 18:36:38] 2025-11-27 02:35:42,102 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 18:36:38] 2025-11-27 02:35:42,102 | INFO     | cpuconsumptiontime: 39 s
[2025-11-26 18:36:38] 2025-11-27 02:35:42,102 | INFO     | nevents: 0
[2025-11-26 18:36:38] 2025-11-27 02:35:42,102 | INFO     | neventsw: 0
[2025-11-26 18:36:38] 2025-11-27 02:35:42,102 | INFO     | pid: 509872
[2025-11-26 18:36:38] 2025-11-27 02:35:42,102 | INFO     | pgrp: 509872
[2025-11-26 18:36:38] 2025-11-27 02:35:42,102 | INFO     | corecount: 12
[2025-11-26 18:36:38] 2025-11-27 02:35:42,102 | INFO     | event service: False
[2025-11-26 18:36:38] 2025-11-27 02:35:42,102 | INFO     | sizes: {0: 2284142, 1: 2284341, 4: 2284603, 11: 2284631, 54: 2310111, 55: 2314401, 56: 2314557, 176: 2314783}
[2025-11-26 18:36:38] 2025-11-27 02:35:42,102 | INFO     | --------------------------------------------------
[2025-11-26 18:36:38] 2025-11-27 02:35:42,102 | INFO     | 
[2025-11-26 18:36:38] 2025-11-27 02:35:42,102 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 18:36:38] 2025-11-27 02:35:42,116 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,116 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,116 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,116 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,116 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,116 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,117 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,117 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,117 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,117 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,117 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,117 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,117 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,117 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,117 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,117 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,117 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,117 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:36:38] 2025-11-27 02:35:42,117 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,117 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:36:38] 2025-11-27 02:35:42,117 | INFO     | job 6898378207 has completed (purged errors)
[2025-11-26 18:36:38] 2025-11-27 02:35:42,117 | INFO     | overall cleanup function is called
[2025-11-26 18:36:38] 2025-11-27 02:35:43,125 | INFO     | --- collectZombieJob: --- 10, [509872]
[2025-11-26 18:36:38] 2025-11-27 02:35:43,125 | INFO     | zombie collector waiting for pid 509872
[2025-11-26 18:36:38] 2025-11-27 02:35:43,125 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:36:38] 2025-11-27 02:35:43,125 | INFO     | collected zombie processes
[2025-11-26 18:36:38] 2025-11-27 02:35:43,125 | INFO     | will attempt to kill all subprocesses of pid=509872
[2025-11-26 18:36:38] 2025-11-27 02:35:43,271 | INFO     | process IDs to be killed: [509872] (in reverse order)
[2025-11-26 18:36:38] 2025-11-27 02:35:43,328 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:36:38] 2025-11-27 02:35:43,328 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:36:38] 2025-11-27 02:35:43,334 | INFO     | did not find any defunct processes belonging to 509872
[2025-11-26 18:36:38] 2025-11-27 02:35:43,340 | INFO     | did not find any defunct processes belonging to 509872
[2025-11-26 18:36:38] 2025-11-27 02:35:43,341 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:36:38] 2025-11-27 02:35:43,341 | INFO     | ready for new job
[2025-11-26 18:36:38] 2025-11-27 02:35:43,341 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:36:38] 2025-11-27 02:35:43,343 | INFO     | ***************************************
[2025-11-26 18:36:38] 2025-11-27 02:35:43,343 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:36:38] 2025-11-27 02:35:43,343 | INFO     | ***************************************
[2025-11-26 18:36:38] 2025-11-27 02:35:43,343 | INFO     | 
[2025-11-26 18:36:38] 2025-11-27 02:35:43,345 | INFO     | architecture information:
[2025-11-26 18:36:38] 2025-11-27 02:35:43,345 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:36:38] 2025-11-27 02:35:43,354 | INFO     | cat /etc/os-release:
[2025-11-26 18:36:38] NAME="CentOS Linux"
[2025-11-26 18:36:38] VERSION="7 (Core)"
[2025-11-26 18:36:38] ID="centos"
[2025-11-26 18:36:38] ID_LIKE="rhel fedora"
[2025-11-26 18:36:38] VERSION_ID="7"
[2025-11-26 18:36:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:36:38] ANSI_COLOR="0;31"
[2025-11-26 18:36:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:36:38] HOME_URL="https://www.centos.org/"
[2025-11-26 18:36:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:36:38] 
[2025-11-26 18:36:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:36:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:36:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:36:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:36:38] 
[2025-11-26 18:36:38] 2025-11-27 02:35:43,354 | INFO     | ***************************************
[2025-11-26 18:36:38] 2025-11-27 02:35:43,857 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 18:36:38] 2025-11-27 02:35:43,867 | INFO     | sufficient remaining disk space (1916767567872 B)
[2025-11-26 18:36:38] 2025-11-27 02:35:43,867 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:36:38] 2025-11-27 02:35:43,868 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:36:38] 2025-11-27 02:35:43,868 | INFO     | update_server=False
[2025-11-26 18:36:38] 2025-11-27 02:35:43,868 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:36:38] 2025-11-27 02:35:43,868 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:36:38] 2025-11-27 02:35:43,999 | INFO     | all data control threads have been joined
[2025-11-26 18:36:38] 2025-11-27 02:35:44,237 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:36:38] 2025-11-27 02:35:44,238 | INFO     | aborting loop
[2025-11-26 18:36:38] 2025-11-27 02:35:44,265 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:36:38] 2025-11-27 02:35:44,693 | INFO     | all payload control threads have been joined
[2025-11-26 18:36:38] 2025-11-27 02:35:44,854 | INFO     | all job control threads have been joined
[2025-11-26 18:36:38] 2025-11-27 02:35:44,873 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:36:38] 2025-11-27 02:35:44,873 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:36:38] 2025-11-27 02:35:44,973 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:36:38] 2025-11-27 02:35:45,005 | INFO     | [data] control thread has finished
[2025-11-26 18:36:38] 2025-11-27 02:35:45,241 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:36:38] 2025-11-27 02:35:45,271 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:36:38] 2025-11-27 02:35:45,579 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:36:38] 2025-11-27 02:35:45,697 | INFO     | [payload] control thread has finished
[2025-11-26 18:36:38] 2025-11-27 02:35:45,822 | INFO     | [job] validate thread has finished
[2025-11-26 18:36:38] 2025-11-27 02:35:45,859 | INFO     | [job] control thread has finished
[2025-11-26 18:36:38] 2025-11-27 02:35:45,943 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:36:38] 2025-11-27 02:35:45,982 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:36:38] 2025-11-27 02:35:46,012 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:36:38] 2025-11-27 02:35:46,197 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:36:38] 2025-11-27 02:35:46,270 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:36:38] 2025-11-27 02:35:46,372 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:36:38] 2025-11-27 02:35:48,978 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:36:38] 2025-11-27 02:36:14,125 | INFO     | PID=503304 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 18:36:38] 2025-11-27 02:36:14,126 | INFO     | .. there are 19 such processes running
[2025-11-26 18:36:38] 2025-11-27 02:36:14,126 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:36:38] 2025-11-27 02:36:14,126 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:36:38] 2025-11-27 02:36:14,126 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:36:38] 2025-11-27 02:36:32,162 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:36:38] 2025-11-27 02:36:32,966 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139663765997376)>', '<ExcThread(monitor, started 139663377413888)>']
[2025-11-26 18:36:38] 2025-11-27 02:36:33,218 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:36:38] 2025-11-27 02:36:33,218 | INFO     | [monitor] control thread has ended
[2025-11-26 18:36:38] 2025-11-27 02:36:37,985 | INFO     | all workflow threads have been joined
[2025-11-26 18:36:38] 2025-11-27 02:36:37,985 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:36:38] 2025-11-27 02:36:37,985 | INFO     | traces error code: 0
[2025-11-26 18:36:38] 2025-11-27 02:36:37,986 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:36:38] 2025-11-27 02:36:38,096 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:36:38] 2025-11-27 02:36:38,098 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:36:38] 2025-11-27 02:36:38,100 [wrapper] pilotpid: 503304
[2025-11-26 18:36:38] 2025-11-27 02:36:38,102 [wrapper] Pilot exit status: 0
[2025-11-26 18:36:38] 2025-11-27 02:36:38,109 [wrapper] pandaids: 6898378207
[2025-11-26 18:36:38] 2025-11-27 02:36:38,148 [wrapper] cleanup supervisor_pilot  503310 503305
[2025-11-26 18:36:38] 2025-11-27 02:36:38,149 [wrapper] Test setup, not cleaning
[2025-11-26 18:36:38] 2025-11-27 02:36:38,151 [wrapper] apfmon messages muted
[2025-11-26 18:36:38] 2025-11-27 02:36:38,153 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:36:38] 2025-11-27 02:36:38,155 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:36:38]  *** Error codes and diagnostics ***
[2025-11-26 18:36:38]     "exeErrorCode": 65,
[2025-11-26 18:36:38]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 18:36:38]     "pilotErrorCode": 1305,
[2025-11-26 18:36:38]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 18:36:38]  *** Listing of results directory ***
[2025-11-26 18:36:38] total 403024
[2025-11-26 18:36:38] -rw-r--r--. 1 boinc boinc    576529 Nov 26 08:12 pilot3.tar.gz
[2025-11-26 18:36:38] -rwx------. 1 boinc boinc     36292 Nov 26 08:38 runpilot2-wrapper.sh
[2025-11-26 18:36:38] -rw-r--r--. 1 boinc boinc      5112 Nov 26 08:41 queuedata.json
[2025-11-26 18:36:38] -rw-r--r--. 1 boinc boinc       100 Nov 26 18:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:36:38] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 18:32 run_atlas
[2025-11-26 18:36:38] -rw-r--r--. 1 boinc boinc       105 Nov 26 18:32 job.xml
[2025-11-26 18:36:38] -rw-r--r--. 1 boinc boinc      6596 Nov 26 18:32 init_data.xml
[2025-11-26 18:36:38] -rw-r--r--. 2 boinc boinc 408498303 Nov 26 18:32 EVNT.47483658._002594.pool.root.1
[2025-11-26 18:36:38] -rw-r--r--. 2 boinc boinc     15847 Nov 26 18:32 start_atlas.sh
[2025-11-26 18:36:38] drwxrwx--x. 2 boinc boinc      4096 Nov 26 18:32 shared
[2025-11-26 18:36:38] -rw-r--r--. 2 boinc boinc    590110 Nov 26 18:32 input.tar.gz
[2025-11-26 18:36:38] -rw-r--r--. 1 boinc boinc         0 Nov 26 18:32 boinc_lockfile
[2025-11-26 18:36:38] -rw-r--r--. 1 boinc boinc      2787 Nov 26 18:32 pandaJob.out
[2025-11-26 18:36:38] -rw-------. 1 boinc boinc    991554 Nov 26 18:32 agis_schedconf.cvmfs.json
[2025-11-26 18:36:38] -rw-------. 1 boinc boinc   1516240 Nov 26 18:32 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:36:38] drwx------. 5 boinc boinc      4096 Nov 26 18:32 pilot3
[2025-11-26 18:36:38] -rw-r--r--. 1 boinc boinc       523 Nov 26 18:33 boinc_task_state.xml
[2025-11-26 18:36:38] -rw-------. 1 boinc boinc       982 Nov 26 18:33 memory_monitor_summary.json
[2025-11-26 18:36:38] -rw-------. 1 boinc boinc     48444 Nov 26 18:33 log.47556161._005770.job.log.tgz.1
[2025-11-26 18:36:38] -rw-------. 1 boinc boinc        95 Nov 26 18:35 pilot_heartbeat.json
[2025-11-26 18:36:38] -rw-------. 1 boinc boinc     10316 Nov 26 18:35 heartbeat.json
[2025-11-26 18:36:38] -rw-r--r--. 1 boinc boinc        23 Nov 26 18:36 wrapper_checkpoint.txt
[2025-11-26 18:36:38] -rw-r--r--. 1 boinc boinc      8192 Nov 26 18:36 boinc_mmap_file
[2025-11-26 18:36:38] -rw-------. 1 boinc boinc      4822 Nov 26 18:36 pilotlog.txt
[2025-11-26 18:36:38] -rw-------. 1 boinc boinc     92489 Nov 26 18:36 log.47556161._005770.job.log.1
[2025-11-26 18:36:38] -rw-------. 1 boinc boinc       186 Nov 26 18:36 output.list
[2025-11-26 18:36:38] -rw-r--r--. 1 boinc boinc       620 Nov 26 18:36 runtime_log
[2025-11-26 18:36:38] -rw-------. 1 boinc boinc    163840 Nov 26 18:36 result.tar.gz
[2025-11-26 18:36:38] -rw-r--r--. 1 boinc boinc      8636 Nov 26 18:36 runtime_log.err
[2025-11-26 18:36:38] -rw-------. 1 boinc boinc       644 Nov 26 18:36 g82LDmliXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYINKDmsmFGPn.diag
[2025-11-26 18:36:38] -rw-r--r--. 1 boinc boinc     22390 Nov 26 18:36 stderr.txt
[2025-11-26 18:36:38] No HITS result produced
[2025-11-26 18:36:38]  *** Contents of shared directory: ***
[2025-11-26 18:36:38] total 399688
[2025-11-26 18:36:38] -rw-r--r--. 2 boinc boinc 408498303 Nov 26 18:32 ATLAS.root_0
[2025-11-26 18:36:38] -rw-r--r--. 2 boinc boinc     15847 Nov 26 18:32 start_atlas.sh
[2025-11-26 18:36:38] -rw-r--r--. 2 boinc boinc    590110 Nov 26 18:32 input.tar.gz
[2025-11-26 18:36:38] -rw-------. 1 boinc boinc    163840 Nov 26 18:36 result.tar.gz
18:36:39 (499662): run_atlas exited; CPU time 39.106007
18:36:39 (499662): called boinc_finish(0)

</stderr_txt>
]]>

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