Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:03:28 (911265): wrapper (7.7.26015): starting
21:03:28 (911265): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 21:03:28] Arguments: --nthreads 8
[2025-11-26 21:03:28] Threads: 8
[2025-11-26 21:03:28] Checking for CVMFS
[2025-11-26 21:03:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 21:03:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 21:03:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 21:03:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 21:03:29] 2.13.2.0 6491 37318 237012 153342 3 590 40320608 40960001 25795 16776704 0 160487279 99.574 167961684 40530 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 21:03:29] CVMFS is ok
[2025-11-26 21:03:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 21:03:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 21:03:29] Further information can be found at the LHC@home message board.
[2025-11-26 21:03:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 21:03:29] Checking for apptainer binary...
[2025-11-26 21:03:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 21:03:29] Running /usr/bin/apptainer --version
[2025-11-26 21:03:29] apptainer version 1.4.4-1.el9
[2025-11-26 21:03:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 21:03:29] c-212-20.aglt2.org
[2025-11-26 21:03:29] apptainer works
[2025-11-26 21:03:29] Set ATHENA_PROC_NUMBER=8
[2025-11-26 21:03:29] Set ATHENA_CORE_NUMBER=8
[2025-11-26 21:03:29] Starting ATLAS job with PandaID=6898686589
[2025-11-26 21:03:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:13:09]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:13:09] 2025-11-27 21:12:23,123 | INFO     | monitor loop #4127: job 0:6898686589 is in state 'finished'
[2025-11-27 16:13:09] 2025-11-27 21:12:23,123 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:13:09] 2025-11-27 21:12:24,597 | INFO     | time since job start (68907s) is within the limit (172800.0s)
[2025-11-27 16:13:09] 2025-11-27 21:12:25,632 | INFO     | monitor loop #4128: job 0:6898686589 is in state 'finished'
[2025-11-27 16:13:09] 2025-11-27 21:12:25,632 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:13:09] 2025-11-27 21:12:26,604 | INFO     | time since job start (68909s) is within the limit (172800.0s)
[2025-11-27 16:13:09] 2025-11-27 21:12:28,143 | INFO     | monitor loop #4129: job 0:6898686589 is in state 'finished'
[2025-11-27 16:13:09] 2025-11-27 21:12:28,143 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:13:09] 2025-11-27 21:12:28,853 | INFO     | PID=915280 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 16:13:09] 2025-11-27 21:12:28,853 | INFO     | .. there are 30 such processes running
[2025-11-27 16:13:09] 2025-11-27 21:12:29,855 | INFO     | time since job start (68912s) is within the limit (172800.0s)
[2025-11-27 16:13:09] 2025-11-27 21:12:30,653 | INFO     | monitor loop #4130: job 0:6898686589 is in state 'finished'
[2025-11-27 16:13:09] 2025-11-27 21:12:30,653 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:13:09] 2025-11-27 21:12:31,862 | INFO     | time since job start (68914s) is within the limit (172800.0s)
[2025-11-27 16:13:09] 2025-11-27 21:12:33,158 | INFO     | monitor loop #4131: job 0:6898686589 is in state 'finished'
[2025-11-27 16:13:09] 2025-11-27 21:12:33,158 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:13:09] 2025-11-27 21:12:33,858 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 16:13:09] 2025-11-27 21:12:33,869 | INFO     | time since job start (68916s) is within the limit (172800.0s)
[2025-11-27 16:13:09] 2025-11-27 21:12:33,876 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3160.659354166668
[2025-11-27 16:13:09] 2025-11-27 21:12:33,928 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6898686589/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:13:09] 2025-11-27 21:12:33,929 | INFO     | extracted standard info from prmon json
[2025-11-27 16:13:09] 2025-11-27 21:12:33,929 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:13:09] 2025-11-27 21:12:33,929 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:13:09] 2025-11-27 21:12:33,944 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:13:09] 2025-11-27 21:12:33,945 | INFO     | sum of square deviations: 446158525910.1702
[2025-11-27 16:13:09] 2025-11-27 21:12:33,975 | INFO     | sum of deviations: 2249720469886.361
[2025-11-27 16:13:09] 2025-11-27 21:12:33,975 | INFO     | mean x: 1764243487.4915855
[2025-11-27 16:13:09] 2025-11-27 21:12:33,976 | INFO     | mean y: 2882292.458813109
[2025-11-27 16:13:09] 2025-11-27 21:12:33,976 | INFO     | intersect: -8893181454.33744
[2025-11-27 16:13:09] 2025-11-27 21:12:33,977 | INFO     | chi2: 20.705673384164356
[2025-11-27 16:13:09] 2025-11-27 21:12:33,978 | INFO     | sum of square deviations: 440257273303.9438
[2025-11-27 16:13:09] 2025-11-27 21:12:34,009 | INFO     | sum of deviations: 2620005333017.675
[2025-11-27 16:13:09] 2025-11-27 21:12:34,009 | INFO     | mean x: 1764243335.0071175
[2025-11-27 16:13:09] 2025-11-27 21:12:34,009 | INFO     | mean y: 2891858.7909252667
[2025-11-27 16:13:09] 2025-11-27 21:12:34,009 | INFO     | intersect: -10496257676.595364
[2025-11-27 16:13:09] 2025-11-27 21:12:34,010 | INFO     | chi2: 17.438249695088672
[2025-11-27 16:13:09] 2025-11-27 21:12:34,010 | INFO     | current chi2=17.438249695088672 (change=15.780330484564686 %)
[2025-11-27 16:13:09] 2025-11-27 21:12:34,011 | INFO     | right removable region: 1123
[2025-11-27 16:13:09] 2025-11-27 21:12:34,012 | INFO     | sum of square deviations: 440254868683.94305
[2025-11-27 16:13:09] 2025-11-27 21:12:34,078 | INFO     | sum of deviations: 1803752786009.7803
[2025-11-27 16:13:09] 2025-11-27 21:12:34,090 | INFO     | mean x: 1764243640.0071175
[2025-11-27 16:13:09] 2025-11-27 21:12:34,090 | INFO     | mean y: 2893811.653024911
[2025-11-27 16:13:09] 2025-11-27 21:12:34,090 | INFO     | intersect: -7225326946.871746
[2025-11-27 16:13:09] 2025-11-27 21:12:34,091 | INFO     | chi2: 16.81953225895747
[2025-11-27 16:13:09] 2025-11-27 21:12:34,092 | INFO     | current chi2=16.81953225895747 (change=18.768484623055038 %)
[2025-11-27 16:13:09] 2025-11-27 21:12:34,092 | INFO     | left removable region: 10
[2025-11-27 16:13:09] 2025-11-27 21:12:34,093 | INFO     | sum of square deviations: 427454494201.4139
[2025-11-27 16:13:09] 2025-11-27 21:12:34,185 | INFO     | sum of deviations: 2044447409593.7388
[2025-11-27 16:13:09] 2025-11-27 21:12:34,188 | INFO     | mean x: 1764243609.5274034
[2025-11-27 16:13:09] 2025-11-27 21:12:34,188 | INFO     | mean y: 2910644.123090746
[2025-11-27 16:13:09] 2025-11-27 21:12:34,188 | INFO     | intersect: -8435188209.251129
[2025-11-27 16:13:09] 2025-11-27 21:12:34,189 | INFO     | chi2: 11.990779768624131
[2025-11-27 16:13:09] 2025-11-27 21:12:34,197 | INFO     | current memory leak: 4.78 B/s (using 1113 data points, chi2=11.99)
[2025-11-27 16:13:09] 2025-11-27 21:12:34,198 | INFO     | could have reported an average CPU frequency of 3147 MHz (41 samples)
[2025-11-27 16:13:09] 2025-11-27 21:12:34,198 | INFO     | ..............................
[2025-11-27 16:13:09] 2025-11-27 21:12:34,198 | INFO     | . Timing measurements:
[2025-11-27 16:13:09] 2025-11-27 21:12:34,198 | INFO     | . get job = 0 s
[2025-11-27 16:13:09] 2025-11-27 21:12:34,198 | INFO     | . initial setup = 5 s
[2025-11-27 16:13:09] 2025-11-27 21:12:34,198 | INFO     | . payload setup = 12 s
[2025-11-27 16:13:09] 2025-11-27 21:12:34,198 | INFO     | . stage-in = 0 s
[2025-11-27 16:13:09] 2025-11-27 21:12:34,198 | INFO     | . payload execution = 68850 s
[2025-11-27 16:13:09] 2025-11-27 21:12:34,199 | INFO     | . stage-out = 7 s
[2025-11-27 16:13:09] 2025-11-27 21:12:34,199 | INFO     | . log creation = 1 s
[2025-11-27 16:13:09] 2025-11-27 21:12:34,199 | INFO     | ..............................
[2025-11-27 16:13:09] 2025-11-27 21:12:34,404 | INFO     | 
[2025-11-27 16:13:09] 2025-11-27 21:12:34,404 | INFO     | job summary report
[2025-11-27 16:13:09] 2025-11-27 21:12:34,404 | INFO     | --------------------------------------------------
[2025-11-27 16:13:09] 2025-11-27 21:12:34,404 | INFO     | PanDA job id: 6898686589
[2025-11-27 16:13:09] 2025-11-27 21:12:34,404 | INFO     | task id: 47556185
[2025-11-27 16:13:09] 2025-11-27 21:12:34,405 | INFO     | errors: (none)
[2025-11-27 16:13:09] 2025-11-27 21:12:34,405 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:13:09] 2025-11-27 21:12:34,405 | INFO     | pilot state: finished 
[2025-11-27 16:13:09] 2025-11-27 21:12:34,405 | INFO     | transexitcode: 0
[2025-11-27 16:13:09] 2025-11-27 21:12:34,405 | INFO     | exeerrorcode: 0
[2025-11-27 16:13:09] 2025-11-27 21:12:34,405 | INFO     | exeerrordiag: 
[2025-11-27 16:13:09] 2025-11-27 21:12:34,405 | INFO     | exitcode: 0
[2025-11-27 16:13:09] 2025-11-27 21:12:34,405 | INFO     | exitmsg: OK
[2025-11-27 16:13:09] 2025-11-27 21:12:34,405 | INFO     | cpuconsumptiontime: 196784 s
[2025-11-27 16:13:09] 2025-11-27 21:12:34,405 | INFO     | nevents: 1000
[2025-11-27 16:13:09] 2025-11-27 21:12:34,405 | INFO     | neventsw: 0
[2025-11-27 16:13:09] 2025-11-27 21:12:34,405 | INFO     | pid: 922036
[2025-11-27 16:13:09] 2025-11-27 21:12:34,405 | INFO     | pgrp: 922036
[2025-11-27 16:13:09] 2025-11-27 21:12:34,405 | INFO     | corecount: 8
[2025-11-27 16:13:09] 2025-11-27 21:12:34,405 | INFO     | event service: False
[2025-11-27 16:13:09] 2025-11-27 21:12:34,406 | INFO     | sizes: {0: 2284314, 1: 2284342, 10: 2284604, 11: 2284632, 68864: 2341206, 68872: 2350200, 68875: 2350384, 68896: 2350726}
[2025-11-27 16:13:09] 2025-11-27 21:12:34,406 | INFO     | --------------------------------------------------
[2025-11-27 16:13:09] 2025-11-27 21:12:34,406 | INFO     | 
[2025-11-27 16:13:09] 2025-11-27 21:12:34,406 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 16:13:09] 2025-11-27 21:12:34,474 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,474 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,475 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,475 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,475 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,475 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,475 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,475 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,475 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,475 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,475 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,475 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,475 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,475 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,476 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,476 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,476 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,476 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:13:09] 2025-11-27 21:12:34,476 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,476 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:13:09] 2025-11-27 21:12:34,476 | INFO     | job 6898686589 has completed (purged errors)
[2025-11-27 16:13:09] 2025-11-27 21:12:34,476 | INFO     | overall cleanup function is called
[2025-11-27 16:13:09] 2025-11-27 21:12:35,500 | INFO     | --- collectZombieJob: --- 10, [922036]
[2025-11-27 16:13:09] 2025-11-27 21:12:35,504 | INFO     | zombie collector waiting for pid 922036
[2025-11-27 16:13:09] 2025-11-27 21:12:35,511 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:13:09] 2025-11-27 21:12:35,511 | INFO     | collected zombie processes
[2025-11-27 16:13:09] 2025-11-27 21:12:35,511 | INFO     | will attempt to kill all subprocesses of pid=922036
[2025-11-27 16:13:09] 2025-11-27 21:12:36,310 | INFO     | process IDs to be killed: [922036] (in reverse order)
[2025-11-27 16:13:09] 2025-11-27 21:12:36,451 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:13:09] 2025-11-27 21:12:36,451 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:13:09] 2025-11-27 21:12:36,486 | INFO     | did not find any defunct processes belonging to 922036
[2025-11-27 16:13:09] 2025-11-27 21:12:36,512 | INFO     | did not find any defunct processes belonging to 922036
[2025-11-27 16:13:09] 2025-11-27 21:12:36,524 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:13:09] 2025-11-27 21:12:36,524 | INFO     | ready for new job
[2025-11-27 16:13:09] 2025-11-27 21:12:36,524 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:13:09] 2025-11-27 21:12:36,534 | INFO     | ***************************************
[2025-11-27 16:13:09] 2025-11-27 21:12:36,534 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:13:09] 2025-11-27 21:12:36,534 | INFO     | ***************************************
[2025-11-27 16:13:09] 2025-11-27 21:12:36,534 | INFO     | 
[2025-11-27 16:13:09] 2025-11-27 21:12:36,543 | INFO     | architecture information:
[2025-11-27 16:13:09] 2025-11-27 21:12:36,543 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:13:09] 2025-11-27 21:12:36,584 | INFO     | cat /etc/os-release:
[2025-11-27 16:13:09] NAME="CentOS Linux"
[2025-11-27 16:13:09] VERSION="7 (Core)"
[2025-11-27 16:13:09] ID="centos"
[2025-11-27 16:13:09] ID_LIKE="rhel fedora"
[2025-11-27 16:13:09] VERSION_ID="7"
[2025-11-27 16:13:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:13:09] ANSI_COLOR="0;31"
[2025-11-27 16:13:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:13:09] HOME_URL="https://www.centos.org/"
[2025-11-27 16:13:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:13:09] 
[2025-11-27 16:13:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:13:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:13:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:13:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:13:09] 
[2025-11-27 16:13:09] 2025-11-27 21:12:36,584 | INFO     | ***************************************
[2025-11-27 16:13:09] 2025-11-27 21:12:37,088 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 16:13:09] 2025-11-27 21:12:37,132 | INFO     | sufficient remaining disk space (122863747072 B)
[2025-11-27 16:13:09] 2025-11-27 21:12:37,132 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:13:09] 2025-11-27 21:12:37,132 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:13:09] 2025-11-27 21:12:37,132 | INFO     | update_server=False
[2025-11-27 16:13:09] 2025-11-27 21:12:37,132 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:13:09] 2025-11-27 21:12:37,132 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:13:09] 2025-11-27 21:12:37,133 | INFO     | aborting loop
[2025-11-27 16:13:09] 2025-11-27 21:12:37,133 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:13:09] 2025-11-27 21:12:37,648 | INFO     | all job control threads have been joined
[2025-11-27 16:13:09] 2025-11-27 21:12:37,756 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:13:09] 2025-11-27 21:12:38,140 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:13:09] 2025-11-27 21:12:38,141 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:13:09] 2025-11-27 21:12:38,183 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:13:09] 2025-11-27 21:12:38,219 | INFO     | all data control threads have been joined
[2025-11-27 16:13:09] 2025-11-27 21:12:38,408 | INFO     | [job] validate thread has finished
[2025-11-27 16:13:09] 2025-11-27 21:12:38,495 | INFO     | all payload control threads have been joined
[2025-11-27 16:13:09] 2025-11-27 21:12:38,656 | INFO     | [job] control thread has finished
[2025-11-27 16:13:09] 2025-11-27 21:12:38,693 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:13:09] 2025-11-27 21:12:38,868 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:13:09] 2025-11-27 21:12:39,030 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:13:09] 2025-11-27 21:12:39,035 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:13:09] 2025-11-27 21:12:39,225 | INFO     | [data] control thread has finished
[2025-11-27 16:13:09] 2025-11-27 21:12:39,248 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:13:09] 2025-11-27 21:12:39,407 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:13:09] 2025-11-27 21:12:39,422 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:13:09] 2025-11-27 21:12:39,506 | INFO     | [payload] control thread has finished
[2025-11-27 16:13:09] 2025-11-27 21:12:39,764 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:13:09] 2025-11-27 21:12:40,428 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:13:09] 2025-11-27 21:12:41,148 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:13:09] 2025-11-27 21:12:59,079 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:13:09] 2025-11-27 21:12:59,194 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139640048781120)>', '<ExcThread(monitor, started 139639553767168)>']
[2025-11-27 16:13:09] 2025-11-27 21:13:04,219 | INFO     | all workflow threads have been joined
[2025-11-27 16:13:09] 2025-11-27 21:13:04,219 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:13:09] 2025-11-27 21:13:04,220 | INFO     | traces error code: 0
[2025-11-27 16:13:09] 2025-11-27 21:13:04,220 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:13:09] 2025-11-27 21:13:08,198 | INFO     | PID=915280 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 16:13:09] 2025-11-27 21:13:08,199 | INFO     | .. there are 30 such processes running
[2025-11-27 16:13:09] 2025-11-27 21:13:08,203 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:13:09] 2025-11-27 21:13:08,203 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:13:09] 2025-11-27 21:13:08,203 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:13:09] 2025-11-27 21:13:08,203 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:13:09] 2025-11-27 21:13:08,203 | INFO     | [monitor] control thread has ended
[2025-11-27 16:13:09] 2025-11-27 21:13:08,580 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:13:09] 2025-11-27 21:13:08,595 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:13:09] 2025-11-27 21:13:08,610 [wrapper] pilotpid: 915280
[2025-11-27 16:13:09] 2025-11-27 21:13:08,627 [wrapper] Pilot exit status: 0
[2025-11-27 16:13:09] 2025-11-27 21:13:08,732 [wrapper] pandaids: 6898686589
[2025-11-27 16:13:09] 2025-11-27 21:13:09,445 [wrapper] cleanup supervisor_pilot 1546706 915281
[2025-11-27 16:13:09] 2025-11-27 21:13:09,452 [wrapper] Test setup, not cleaning
[2025-11-27 16:13:09] 2025-11-27 21:13:09,455 [wrapper] apfmon messages muted
[2025-11-27 16:13:09] 2025-11-27 21:13:09,457 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:13:09] 2025-11-27 21:13:09,459 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:13:09]  *** Error codes and diagnostics ***
[2025-11-27 16:13:09]     "exeErrorCode": 0,
[2025-11-27 16:13:09]     "exeErrorDiag": "",
[2025-11-27 16:13:09]     "pilotErrorCode": 0,
[2025-11-27 16:13:09]     "pilotErrorDiag": "",
[2025-11-27 16:13:09]  *** Listing of results directory ***
[2025-11-27 16:13:09] total 1324688
[2025-11-27 16:13:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 16:13:09] -rwx------. 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-11-27 16:13:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-11-27 16:13:09] -rw-r--r--. 1 boincer umatlas       100 Nov 26 21:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:13:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 21:03 run_atlas
[2025-11-27 16:13:09] -rw-r--r--. 1 boincer umatlas       105 Nov 26 21:03 job.xml
[2025-11-27 16:13:09] -rw-r--r--. 2 boincer umatlas 411231055 Nov 26 21:03 EVNT.47483658._004300.pool.root.1
[2025-11-27 16:13:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 21:03 start_atlas.sh
[2025-11-27 16:13:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 21:03 shared
[2025-11-27 16:13:09] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 21:03 input.tar.gz
[2025-11-27 16:13:09] -rw-r--r--. 1 boincer umatlas         0 Nov 26 21:03 boinc_lockfile
[2025-11-27 16:13:09] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 21:03 pandaJob.out
[2025-11-27 16:13:09] -rw-------. 1 boincer umatlas        57 Nov 26 21:03 setup.sh.local
[2025-11-27 16:13:09] -rw-------. 1 boincer umatlas    991530 Nov 26 21:03 agis_schedconf.cvmfs.json
[2025-11-27 16:13:09] drwx------. 5 boincer umatlas      4096 Nov 26 21:03 pilot3
[2025-11-27 16:13:09] -rw-r--r--. 1 boincer umatlas       532 Nov 27 15:38 boinc_task_state.xml
[2025-11-27 16:13:09] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 16:10 init_data.xml
[2025-11-27 16:13:09] -rw-------. 1 boincer umatlas 919595512 Nov 27 16:10 HITS.47556185._000633.pool.root.1
[2025-11-27 16:13:09] -rw-------. 1 boincer umatlas      1060 Nov 27 16:12 memory_monitor_summary.json
[2025-11-27 16:13:09] -rw-------. 1 boincer umatlas   1516240 Nov 27 16:12 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:13:09] -rw-------. 1 boincer umatlas   2228610 Nov 27 16:12 log.47556185._000633.job.log.tgz.1
[2025-11-27 16:13:09] -rw-------. 1 boincer umatlas      8605 Nov 27 16:12 heartbeat.json
[2025-11-27 16:13:09] -rw-------. 1 boincer umatlas        95 Nov 27 16:13 pilot_heartbeat.json
[2025-11-27 16:13:09] -rw-------. 1 boincer umatlas       822 Nov 27 16:13 pilotlog.txt
[2025-11-27 16:13:09] -rw-r--r--. 1 boincer umatlas        29 Nov 27 16:13 wrapper_checkpoint.txt
[2025-11-27 16:13:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:13 boinc_mmap_file
[2025-11-27 16:13:09] -rw-------. 1 boincer umatlas   8649640 Nov 27 16:13 log.47556185._000633.job.log.1
[2025-11-27 16:13:09] -rw-------. 1 boincer umatlas       353 Nov 27 16:13 output.list
[2025-11-27 16:13:09] -rw-r--r--. 1 boincer umatlas       620 Nov 27 16:13 runtime_log
[2025-11-27 16:13:09] -rw-------. 1 boincer umatlas  10895360 Nov 27 16:13 result.tar.gz
[2025-11-27 16:13:09] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 16:13 runtime_log.err
[2025-11-27 16:13:09] -rw-------. 1 boincer umatlas       663 Nov 27 16:13 opFKDmYgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmo9JKDmzW8snm.diag
[2025-11-27 16:13:09] -rw-r--r--. 1 boincer umatlas      2141 Nov 27 16:13 stderr.txt
[2025-11-27 16:13:09] HITS file was successfully produced:
[2025-11-27 16:13:09] -rw-------. 1 boincer umatlas 919595512 Nov 27 16:10 shared/HITS.pool.root.1
[2025-11-27 16:13:09]  *** Contents of shared directory: ***
[2025-11-27 16:13:09] total 1310884
[2025-11-27 16:13:09] -rw-r--r--. 2 boincer umatlas 411231055 Nov 26 21:03 ATLAS.root_0
[2025-11-27 16:13:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 21:03 start_atlas.sh
[2025-11-27 16:13:09] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 21:03 input.tar.gz
[2025-11-27 16:13:09] -rw-------. 1 boincer umatlas 919595512 Nov 27 16:10 HITS.pool.root.1
[2025-11-27 16:13:09] -rw-------. 1 boincer umatlas  10895360 Nov 27 16:13 result.tar.gz
16:13:11 (911265): run_atlas exited; CPU time 197923.995980
16:13:11 (911265): called boinc_finish(0)

</stderr_txt>
]]>

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