Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:07:56 (4121434): wrapper (7.7.26015): starting
21:07:56 (4121434): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 21:07:56] Arguments: --nthreads 8
[2025-11-26 21:07:56] Threads: 8
[2025-11-26 21:07:56] Checking for CVMFS
[2025-11-26 21:07:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 21:07:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 21:07:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 21:07:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 21:07:58] 2.13.2.0 9514 36548 473632 153342 1 387 36740786 40960000 20980 16776704 0 100387468 99.577 105261721 35545 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 21:07:58] CVMFS is ok
[2025-11-26 21:07:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 21:07:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 21:07:58] Further information can be found at the LHC@home message board.
[2025-11-26 21:07:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 21:07:58] Checking for apptainer binary...
[2025-11-26 21:07:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 21:07:58] Running /usr/bin/apptainer --version
[2025-11-26 21:07:58] apptainer version 1.4.4-1.el9
[2025-11-26 21:07:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 21:07:58] c-211-33-3.aglt2.org
[2025-11-26 21:07:58] apptainer works
[2025-11-26 21:07:58] Set ATHENA_PROC_NUMBER=8
[2025-11-26 21:07:58] Set ATHENA_CORE_NUMBER=8
[2025-11-26 21:07:58] Starting ATLAS job with PandaID=6898686583
[2025-11-26 21:07:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 04:36:26]  *** The last 200 lines of the pilot log: ***
[2025-11-28 04:36:26] 2025-11-28 09:35:38,606 | INFO     | time since job start (113225s) is within the limit (172800.0s)
[2025-11-28 04:36:26] 2025-11-28 09:35:40,613 | INFO     | time since job start (113227s) is within the limit (172800.0s)
[2025-11-28 04:36:26] 2025-11-28 09:35:41,114 | INFO     | monitor loop #6203: job 0:6898686583 is in state 'finished'
[2025-11-28 04:36:26] 2025-11-28 09:35:41,115 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:36:26] 2025-11-28 09:35:42,630 | INFO     | time since job start (113229s) is within the limit (172800.0s)
[2025-11-28 04:36:26] 2025-11-28 09:35:43,621 | INFO     | monitor loop #6204: job 0:6898686583 is in state 'finished'
[2025-11-28 04:36:26] 2025-11-28 09:35:43,622 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:36:26] 2025-11-28 09:35:44,653 | INFO     | time since job start (113231s) is within the limit (172800.0s)
[2025-11-28 04:36:26] 2025-11-28 09:35:46,126 | INFO     | monitor loop #6205: job 0:6898686583 is in state 'finished'
[2025-11-28 04:36:26] 2025-11-28 09:35:46,127 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:36:26] 2025-11-28 09:35:46,660 | INFO     | time since job start (113233s) is within the limit (172800.0s)
[2025-11-28 04:36:26] 2025-11-28 09:35:48,633 | INFO     | monitor loop #6206: job 0:6898686583 is in state 'finished'
[2025-11-28 04:36:26] 2025-11-28 09:35:48,634 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:36:26] 2025-11-28 09:35:48,688 | INFO     | time since job start (113235s) is within the limit (172800.0s)
[2025-11-28 04:36:26] 2025-11-28 09:35:49,873 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 04:36:26] 2025-11-28 09:35:49,910 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2600.582989583334
[2025-11-28 04:36:26] 2025-11-28 09:35:50,011 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6898686583/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 04:36:26] 2025-11-28 09:35:50,029 | INFO     | extracted standard info from prmon json
[2025-11-28 04:36:26] 2025-11-28 09:35:50,030 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 04:36:26] 2025-11-28 09:35:50,030 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 04:36:26] 2025-11-28 09:35:50,211 | INFO     | fitting pss+swap vs Time
[2025-11-28 04:36:26] 2025-11-28 09:35:50,236 | INFO     | sum of square deviations: 1979170179822.8496
[2025-11-28 04:36:26] 2025-11-28 09:35:50,666 | INFO     | sum of deviations: 6146541904937.693
[2025-11-28 04:36:26] 2025-11-28 09:35:50,667 | INFO     | mean x: 1764265935.883558
[2025-11-28 04:36:26] 2025-11-28 09:35:50,667 | INFO     | mean y: 2943213.609703504
[2025-11-28 04:36:26] 2025-11-28 09:35:50,667 | INFO     | intersect: -5476188705.87639
[2025-11-28 04:36:26] 2025-11-28 09:35:50,673 | INFO     | chi2: 22.12699440761608
[2025-11-28 04:36:26] 2025-11-28 09:35:50,681 | INFO     | sum of square deviations: 1963210978300.785
[2025-11-28 04:36:26] 2025-11-28 09:35:50,701 | INFO     | time since job start (113237s) is within the limit (172800.0s)
[2025-11-28 04:36:26] 2025-11-28 09:35:50,844 | INFO     | sum of deviations: 6851134809601.248
[2025-11-28 04:36:26] 2025-11-28 09:35:50,845 | INFO     | mean x: 1764265783.3967566
[2025-11-28 04:36:26] 2025-11-28 09:35:50,845 | INFO     | mean y: 2949944.812972973
[2025-11-28 04:36:26] 2025-11-28 09:35:50,845 | INFO     | intersect: -6153913915.269844
[2025-11-28 04:36:26] 2025-11-28 09:35:50,852 | INFO     | chi2: 18.20654098996594
[2025-11-28 04:36:26] 2025-11-28 09:35:50,852 | INFO     | current chi2=18.20654098996594 (change=17.717966323979027 %)
[2025-11-28 04:36:26] 2025-11-28 09:35:50,852 | INFO     | right removable region: 1849
[2025-11-28 04:36:26] 2025-11-28 09:35:50,859 | INFO     | sum of square deviations: 1963205452310.7795
[2025-11-28 04:36:26] 2025-11-28 09:35:51,028 | INFO     | sum of deviations: 5409479239875.153
[2025-11-28 04:36:26] 2025-11-28 09:35:51,029 | INFO     | mean x: 1764266088.3967566
[2025-11-28 04:36:26] 2025-11-28 09:35:51,029 | INFO     | mean y: 2950254.4616216216
[2025-11-28 04:36:26] 2025-11-28 09:35:51,029 | INFO     | intersect: -4858365084.472757
[2025-11-28 04:36:26] 2025-11-28 09:35:51,032 | INFO     | chi2: 18.308718920901
[2025-11-28 04:36:26] 2025-11-28 09:35:51,033 | INFO     | current chi2=18.308718920901 (change=17.256186793272 %)
[2025-11-28 04:36:26] 2025-11-28 09:35:51,033 | INFO     | left removable region: 10
[2025-11-28 04:36:26] 2025-11-28 09:35:51,040 | INFO     | sum of square deviations: 1928392357170.7937
[2025-11-28 04:36:26] 2025-11-28 09:35:51,201 | INFO     | sum of deviations: 5698797862895.939
[2025-11-28 04:36:26] 2025-11-28 09:35:51,201 | INFO     | mean x: 1764266057.925503
[2025-11-28 04:36:26] 2025-11-28 09:35:51,202 | INFO     | mean y: 2963369.379010332
[2025-11-28 04:36:26] 2025-11-28 09:35:51,202 | INFO     | intersect: -5210807367.213481
[2025-11-28 04:36:26] 2025-11-28 09:35:51,209 | INFO     | chi2: 11.87165245676605
[2025-11-28 04:36:26] 2025-11-28 09:35:51,209 | INFO     | current memory leak: 2.96 B/s (using 1839 data points, chi2=11.87)
[2025-11-28 04:36:26] 2025-11-28 09:35:51,215 | INFO     | could have reported an average CPU frequency of 2605 MHz (65 samples)
[2025-11-28 04:36:26] 2025-11-28 09:35:51,216 | INFO     | ..............................
[2025-11-28 04:36:26] 2025-11-28 09:35:51,216 | INFO     | . Timing measurements:
[2025-11-28 04:36:26] 2025-11-28 09:35:51,216 | INFO     | . get job = 0 s
[2025-11-28 04:36:26] 2025-11-28 09:35:51,216 | INFO     | . initial setup = 4 s
[2025-11-28 04:36:26] 2025-11-28 09:35:51,216 | INFO     | . payload setup = 20 s
[2025-11-28 04:36:26] 2025-11-28 09:35:51,216 | INFO     | . stage-in = 0 s
[2025-11-28 04:36:26] 2025-11-28 09:35:51,216 | INFO     | . payload execution = 113133 s
[2025-11-28 04:36:26] 2025-11-28 09:35:51,216 | INFO     | . stage-out = 10 s
[2025-11-28 04:36:26] 2025-11-28 09:35:51,217 | INFO     | . log creation = 4 s
[2025-11-28 04:36:26] 2025-11-28 09:35:51,217 | INFO     | ..............................
[2025-11-28 04:36:26] 2025-11-28 09:35:51,220 | INFO     | monitor loop #6207: job 0:6898686583 is in state 'finished'
[2025-11-28 04:36:26] 2025-11-28 09:35:51,220 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:36:26] 2025-11-28 09:35:51,459 | INFO     | 
[2025-11-28 04:36:26] 2025-11-28 09:35:51,459 | INFO     | job summary report
[2025-11-28 04:36:26] 2025-11-28 09:35:51,459 | INFO     | --------------------------------------------------
[2025-11-28 04:36:26] 2025-11-28 09:35:51,459 | INFO     | PanDA job id: 6898686583
[2025-11-28 04:36:26] 2025-11-28 09:35:51,459 | INFO     | task id: 47556185
[2025-11-28 04:36:26] 2025-11-28 09:35:51,459 | INFO     | errors: (none)
[2025-11-28 04:36:26] 2025-11-28 09:35:51,460 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 04:36:26] 2025-11-28 09:35:51,460 | INFO     | pilot state: finished 
[2025-11-28 04:36:26] 2025-11-28 09:35:51,460 | INFO     | transexitcode: 0
[2025-11-28 04:36:26] 2025-11-28 09:35:51,460 | INFO     | exeerrorcode: 0
[2025-11-28 04:36:26] 2025-11-28 09:35:51,460 | INFO     | exeerrordiag: 
[2025-11-28 04:36:26] 2025-11-28 09:35:51,460 | INFO     | exitcode: 0
[2025-11-28 04:36:26] 2025-11-28 09:35:51,460 | INFO     | exitmsg: OK
[2025-11-28 04:36:26] 2025-11-28 09:35:51,460 | INFO     | cpuconsumptiontime: 280499 s
[2025-11-28 04:36:26] 2025-11-28 09:35:51,460 | INFO     | nevents: 1000
[2025-11-28 04:36:26] 2025-11-28 09:35:51,460 | INFO     | neventsw: 0
[2025-11-28 04:36:26] 2025-11-28 09:35:51,460 | INFO     | pid: 4137190
[2025-11-28 04:36:26] 2025-11-28 09:35:51,460 | INFO     | pgrp: 4137190
[2025-11-28 04:36:26] 2025-11-28 09:35:51,461 | INFO     | corecount: 8
[2025-11-28 04:36:26] 2025-11-28 09:35:51,461 | INFO     | event service: False
[2025-11-28 04:36:26] 2025-11-28 09:35:51,461 | INFO     | sizes: {0: 2284143, 1: 2284228, 2: 2284370, 13: 2284370, 14: 2284688, 24: 2284716, 113155: 2360384, 113156: 2360383, 113168: 2369433, 113172: 2369489, 113202: 2369
[2025-11-28 04:36:26] 2025-11-28 09:35:51,461 | INFO     | --------------------------------------------------
[2025-11-28 04:36:26] 2025-11-28 09:35:51,461 | INFO     | 
[2025-11-28 04:36:26] 2025-11-28 09:35:51,461 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-28 04:36:26] 2025-11-28 09:35:51,513 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,513 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,513 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,513 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,513 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,513 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,514 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,514 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,514 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,514 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,514 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,514 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,514 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,514 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,514 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,514 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,514 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,515 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 04:36:26] 2025-11-28 09:35:51,515 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,515 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 04:36:26] 2025-11-28 09:35:51,515 | INFO     | job 6898686583 has completed (purged errors)
[2025-11-28 04:36:26] 2025-11-28 09:35:51,515 | INFO     | overall cleanup function is called
[2025-11-28 04:36:26] 2025-11-28 09:35:52,548 | INFO     | --- collectZombieJob: --- 10, [4137190]
[2025-11-28 04:36:26] 2025-11-28 09:35:52,549 | INFO     | zombie collector waiting for pid 4137190
[2025-11-28 04:36:26] 2025-11-28 09:35:52,549 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 04:36:26] 2025-11-28 09:35:52,549 | INFO     | collected zombie processes
[2025-11-28 04:36:26] 2025-11-28 09:35:52,549 | INFO     | will attempt to kill all subprocesses of pid=4137190
[2025-11-28 04:36:26] 2025-11-28 09:35:54,391 | INFO     | process IDs to be killed: [4137190] (in reverse order)
[2025-11-28 04:36:26] 2025-11-28 09:35:54,688 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 04:36:26] 2025-11-28 09:35:54,688 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 04:36:26] 2025-11-28 09:35:54,724 | INFO     | did not find any defunct processes belonging to 4137190
[2025-11-28 04:36:26] 2025-11-28 09:35:54,758 | INFO     | did not find any defunct processes belonging to 4137190
[2025-11-28 04:36:26] 2025-11-28 09:35:54,762 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 04:36:26] 2025-11-28 09:35:54,762 | INFO     | ready for new job
[2025-11-28 04:36:26] 2025-11-28 09:35:54,763 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 04:36:26] 2025-11-28 09:35:54,780 | INFO     | ***************************************
[2025-11-28 04:36:26] 2025-11-28 09:35:54,780 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 04:36:26] 2025-11-28 09:35:54,780 | INFO     | ***************************************
[2025-11-28 04:36:26] 2025-11-28 09:35:54,780 | INFO     | 
[2025-11-28 04:36:26] 2025-11-28 09:35:54,791 | INFO     | architecture information:
[2025-11-28 04:36:26] 2025-11-28 09:35:54,795 | INFO     | executing command: cat /etc/os-release
[2025-11-28 04:36:26] 2025-11-28 09:35:54,842 | INFO     | cat /etc/os-release:
[2025-11-28 04:36:26] NAME="CentOS Linux"
[2025-11-28 04:36:26] VERSION="7 (Core)"
[2025-11-28 04:36:26] ID="centos"
[2025-11-28 04:36:26] ID_LIKE="rhel fedora"
[2025-11-28 04:36:26] VERSION_ID="7"
[2025-11-28 04:36:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 04:36:26] ANSI_COLOR="0;31"
[2025-11-28 04:36:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 04:36:26] HOME_URL="https://www.centos.org/"
[2025-11-28 04:36:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 04:36:26] 
[2025-11-28 04:36:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 04:36:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 04:36:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 04:36:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 04:36:26] 
[2025-11-28 04:36:26] 2025-11-28 09:35:54,842 | INFO     | ***************************************
[2025-11-28 04:36:26] 2025-11-28 09:35:55,346 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-28 04:36:26] 2025-11-28 09:35:55,418 | INFO     | sufficient remaining disk space (119315365888 B)
[2025-11-28 04:36:26] 2025-11-28 09:35:55,418 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 04:36:26] 2025-11-28 09:35:55,419 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 04:36:26] 2025-11-28 09:35:55,419 | INFO     | update_server=False
[2025-11-28 04:36:26] 2025-11-28 09:35:55,419 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 04:36:26] 2025-11-28 09:35:55,419 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 04:36:26] 2025-11-28 09:35:55,419 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 04:36:26] 2025-11-28 09:35:55,419 | INFO     | aborting loop
[2025-11-28 04:36:26] 2025-11-28 09:35:55,764 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 04:36:26] 2025-11-28 09:35:56,169 | INFO     | all job control threads have been joined
[2025-11-28 04:36:26] 2025-11-28 09:35:56,248 | INFO     | all data control threads have been joined
[2025-11-28 04:36:26] 2025-11-28 09:35:56,425 | INFO     | [job] retrieve thread has finished
[2025-11-28 04:36:26] 2025-11-28 09:35:56,425 | INFO     | [job] job monitor thread has finished
[2025-11-28 04:36:26] 2025-11-28 09:35:56,499 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 04:36:26] 2025-11-28 09:35:56,518 | INFO     | [payload] failed_post thread has finished
[2025-11-28 04:36:26] 2025-11-28 09:35:56,518 | INFO     | [payload] validate_post thread has finished
[2025-11-28 04:36:26] 2025-11-28 09:35:56,803 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 04:36:26] 2025-11-28 09:35:56,911 | INFO     | all payload control threads have been joined
[2025-11-28 04:36:26] 2025-11-28 09:35:57,184 | INFO     | [job] control thread has finished
[2025-11-28 04:36:26] 2025-11-28 09:35:57,254 | INFO     | [data] control thread has finished
[2025-11-28 04:36:26] 2025-11-28 09:35:57,294 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 04:36:26] 2025-11-28 09:35:57,295 | INFO     | [data] copytool_in thread has finished
[2025-11-28 04:36:26] 2025-11-28 09:35:57,296 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 04:36:26] 2025-11-28 09:35:57,296 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 04:36:26] 2025-11-28 09:35:57,505 | INFO     | [job] queue monitor thread has finished
[2025-11-28 04:36:26] 2025-11-28 09:35:57,621 | INFO     | [job] validate thread has finished
[2025-11-28 04:36:26] 2025-11-28 09:35:57,771 | INFO     | [data] copytool_out thread has finished
[2025-11-28 04:36:26] 2025-11-28 09:35:57,917 | INFO     | [payload] control thread has finished
[2025-11-28 04:36:26] 2025-11-28 09:35:59,427 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 04:36:26] 2025-11-28 09:36:00,987 | INFO     | [monitor] cgroup control has ended
[2025-11-28 04:36:26] 2025-11-28 09:36:01,737 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139710682965824)>', '<ExcThread(monitor, started 139709909034752)>']
[2025-11-28 04:36:26] 2025-11-28 09:36:06,762 | INFO     | all workflow threads have been joined
[2025-11-28 04:36:26] 2025-11-28 09:36:06,763 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 04:36:26] 2025-11-28 09:36:06,763 | INFO     | traces error code: 0
[2025-11-28 04:36:26] 2025-11-28 09:36:06,763 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 04:36:26] 2025-11-28 09:36:24,356 | INFO     | PID=4125516 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 04:36:26] 2025-11-28 09:36:24,359 | INFO     | .. there are 27 such processes running
[2025-11-28 04:36:26] 2025-11-28 09:36:24,360 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 04:36:26] 2025-11-28 09:36:24,360 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 04:36:26] 2025-11-28 09:36:24,360 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 04:36:26] 2025-11-28 09:36:24,360 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 04:36:26] 2025-11-28 09:36:24,360 | INFO     | [monitor] control thread has ended
[2025-11-28 04:36:26] 2025-11-28 09:36:24,992 [wrapper] ==== pilot stdout END ====
[2025-11-28 04:36:26] 2025-11-28 09:36:25,007 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 04:36:26] 2025-11-28 09:36:25,022 [wrapper] pilotpid: 4125516
[2025-11-28 04:36:26] 2025-11-28 09:36:25,042 [wrapper] Pilot exit status: 0
[2025-11-28 04:36:26] 2025-11-28 09:36:25,119 [wrapper] pandaids: 6898686583
[2025-11-28 04:36:26] 2025-11-28 09:36:25,352 [wrapper] cleanup supervisor_pilot 1170089 4125517
[2025-11-28 04:36:26] 2025-11-28 09:36:25,368 [wrapper] Test setup, not cleaning
[2025-11-28 04:36:26] 2025-11-28 09:36:25,387 [wrapper] apfmon messages muted
[2025-11-28 04:36:26] 2025-11-28 09:36:25,410 [wrapper] ==== wrapper stdout END ====
[2025-11-28 04:36:26] 2025-11-28 09:36:25,433 [wrapper] ==== wrapper stderr END ====
[2025-11-28 04:36:26]  *** Error codes and diagnostics ***
[2025-11-28 04:36:26]     "exeErrorCode": 0,
[2025-11-28 04:36:26]     "exeErrorDiag": "",
[2025-11-28 04:36:26]     "pilotErrorCode": 0,
[2025-11-28 04:36:26]     "pilotErrorDiag": "",
[2025-11-28 04:36:26]  *** Listing of results directory ***
[2025-11-28 04:36:26] total 1335996
[2025-11-28 04:36:26] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-28 04:36:26] -rwx------. 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-11-28 04:36:26] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-11-28 04:36:26] -rw-r--r--. 1 boincer umatlas       100 Nov 26 21:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 04:36:26] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 21:07 run_atlas
[2025-11-28 04:36:26] -rw-r--r--. 1 boincer umatlas       105 Nov 26 21:07 job.xml
[2025-11-28 04:36:26] -rw-r--r--. 2 boincer umatlas 411466306 Nov 26 21:07 EVNT.47483658._004299.pool.root.1
[2025-11-28 04:36:26] -rw-r--r--. 2 boincer umatlas    590111 Nov 26 21:07 input.tar.gz
[2025-11-28 04:36:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 21:07 start_atlas.sh
[2025-11-28 04:36:26] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 21:07 shared
[2025-11-28 04:36:26] -rw-r--r--. 1 boincer umatlas         0 Nov 26 21:07 boinc_lockfile
[2025-11-28 04:36:26] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 21:07 pandaJob.out
[2025-11-28 04:36:26] -rw-------. 1 boincer umatlas        57 Nov 26 21:07 setup.sh.local
[2025-11-28 04:36:26] -rw-------. 1 boincer umatlas    991530 Nov 26 21:08 agis_schedconf.cvmfs.json
[2025-11-28 04:36:26] drwx------. 5 boincer umatlas      4096 Nov 26 21:08 pilot3
[2025-11-28 04:36:26] -rw-r--r--. 1 boincer umatlas       533 Nov 28 04:00 boinc_task_state.xml
[2025-11-28 04:36:26] -rw-r--r--. 1 boincer umatlas      6880 Nov 28 04:30 init_data.xml
[2025-11-28 04:36:26] -rw-------. 1 boincer umatlas 920164192 Nov 28 04:31 HITS.47556185._000627.pool.root.1
[2025-11-28 04:36:26] -rw-------. 1 boincer umatlas      1061 Nov 28 04:35 memory_monitor_summary.json
[2025-11-28 04:36:26] -rw-------. 1 boincer umatlas   1516240 Nov 28 04:35 agis_ddmendpoints.agis.ALL.json
[2025-11-28 04:36:26] -rw-------. 1 boincer umatlas   2718613 Nov 28 04:35 log.47556185._000627.job.log.tgz.1
[2025-11-28 04:36:26] -rw-------. 1 boincer umatlas      8641 Nov 28 04:35 heartbeat.json
[2025-11-28 04:36:26] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 04:36 boinc_mmap_file
[2025-11-28 04:36:26] -rw-r--r--. 1 boincer umatlas        29 Nov 28 04:36 wrapper_checkpoint.txt
[2025-11-28 04:36:26] -rw-------. 1 boincer umatlas       823 Nov 28 04:36 pilotlog.txt
[2025-11-28 04:36:26] -rw-------. 1 boincer umatlas        95 Nov 28 04:36 pilot_heartbeat.json
[2025-11-28 04:36:26] -rw-------. 1 boincer umatlas  13538072 Nov 28 04:36 log.47556185._000627.job.log.1
[2025-11-28 04:36:26] -rw-------. 1 boincer umatlas       353 Nov 28 04:36 output.list
[2025-11-28 04:36:26] -rw-r--r--. 1 boincer umatlas       620 Nov 28 04:36 runtime_log
[2025-11-28 04:36:26] -rw-------. 1 boincer umatlas  16271360 Nov 28 04:36 result.tar.gz
[2025-11-28 04:36:26] -rw-r--r--. 1 boincer umatlas      9354 Nov 28 04:36 runtime_log.err
[2025-11-28 04:36:26] -rw-------. 1 boincer umatlas       665 Nov 28 04:36 PjKODmXgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmk9JKDmSVu8No.diag
[2025-11-28 04:36:26] -rw-r--r--. 1 boincer umatlas     21816 Nov 28 04:36 stderr.txt
[2025-11-28 04:36:26] HITS file was successfully produced:
[2025-11-28 04:36:26] -rw-------. 1 boincer umatlas 920164192 Nov 28 04:31 shared/HITS.pool.root.1
[2025-11-28 04:36:26]  *** Contents of shared directory: ***
[2025-11-28 04:36:26] total 1316920
[2025-11-28 04:36:26] -rw-r--r--. 2 boincer umatlas 411466306 Nov 26 21:07 ATLAS.root_0
[2025-11-28 04:36:26] -rw-r--r--. 2 boincer umatlas    590111 Nov 26 21:07 input.tar.gz
[2025-11-28 04:36:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 21:07 start_atlas.sh
[2025-11-28 04:36:26] -rw-------. 1 boincer umatlas 920164192 Nov 28 04:31 HITS.pool.root.1
[2025-11-28 04:36:26] -rw-------. 1 boincer umatlas  16271360 Nov 28 04:36 result.tar.gz
04:36:27 (4121434): run_atlas exited; CPU time 284052.822789
04:36:27 (4121434): called boinc_finish(0)

</stderr_txt>
]]>

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