Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:58:46 (2000754): wrapper (7.7.26015): starting
17:58:46 (2000754): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 17:58:46] Arguments: --nthreads 12
[2025-11-26 17:58:46] Threads: 12
[2025-11-26 17:58:46] Checking for CVMFS
[2025-11-26 17:58:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:58:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:58:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:58:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:58:47] 2.11.5.0 3817131 28896 144248 153342 1 172 40444282 45568001 18717 130560 0 255767072 99.794 153227282 24270 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-26 17:58:47] CVMFS is ok
[2025-11-26 17:58:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:58:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:58:47] Further information can be found at the LHC@home message board.
[2025-11-26 17:58:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:58:47] Checking for apptainer binary...
[2025-11-26 17:58:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:58:47] Running /usr/bin/apptainer --version
[2025-11-26 17:58:47] apptainer version 1.4.1-1.el9
[2025-11-26 17:58:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:58:47] wns0035.triumf.lcg
[2025-11-26 17:58:47] apptainer works
[2025-11-26 17:58:47] Set ATHENA_PROC_NUMBER=12
[2025-11-26 17:58:47] Set ATHENA_CORE_NUMBER=12
[2025-11-26 17:58:47] Starting ATLAS job with PandaID=6898643128
[2025-11-26 17:58:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:03:02]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:03:02] 2025-11-27 02:02:05,660 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 18:03:02] 2025-11-27 02:02:05,661 | WARNING  | wrong length of table data, x=[1764208759.0], y=[1567.0] (must be same and length>=4)
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | could have reported an average CPU frequency of 2702 MHz (4 samples)
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | ..............................
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . Timing measurements:
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . get job = 0 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . initial setup = 2 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . payload setup = 4 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . stage-in = 0 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . payload execution = 46 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . stage-out = 0 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . log creation = 0 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | ..............................
[2025-11-26 18:03:02] 2025-11-27 02:02:05,663 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 18:03:02] 2025-11-27 02:02:05,663 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898643128/pilotlog.txt
[2025-11-26 18:03:02] 2025-11-27 02:02:05,673 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 18:03:02] - Log from pilotlog.txt -
[2025-11-26 18:03:02] 2025-11-27 02:02:05,659 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898643128/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:03:02] 2025-11-27 02:02:05,659 | INFO     | extracted standard info from prmon json
[2025-11-26 18:03:02] 2025-11-27 02:02:05,659 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:03:02] 2025-11-27 02:02:05,659 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:03:02] 2025-11-27 02:02:05,660 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 18:03:02] 2025-11-27 02:02:05,660 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 18:03:02] 2025-11-27 02:02:05,661 | WARNING  | wrong length of table data, x=[1764208759.0], y=[1567.0] (must be same and length>=4)
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | could have reported an average CPU frequency of 2702 MHz (4 samples)
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | ..............................
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . Timing measurements:
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . get job = 0 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . initial setup = 2 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . payload setup = 4 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . stage-in = 0 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . payload execution = 46 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . stage-out = 0 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . log creation = 0 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | ..............................
[2025-11-26 18:03:02] 2025-11-27 02:02:05,663 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 18:03:02] 2025-11-27 02:02:05,663 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898643128/pilotlog.txt
[2025-11-26 18:03:02] 2025-11-27 02:02:05,673 | WARNING  | 
[2025-11-26 18:03:02] [begin log extracts]
[2025-11-26 18:03:02] - Log from pilotlog.txt -
[2025-11-26 18:03:02] 2025-11-27 02:02:05,659 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898643128/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:03:02] 2025-11-27 02:02:05,659 | INFO     | extracted standard info from prmon json
[2025-11-26 18:03:02] 2025-11-27 02:02:05,659 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:03:02] 2025-11-27 02:02:05,659 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:03:02] 2025-11-27 02:02:05,660 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 18:03:02] 2025-11-27 02:02:05,660 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 18:03:02] 2025-11-27 02:02:05,661 | WARNING  | wrong length of table data, x=[1764208759.0], y=[1567.0] (must be same and length>=4)
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | could have reported an average CPU frequency of 2702 MHz (4 samples)
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | ..............................
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . Timing measurements:
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . get job = 0 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . initial setup = 2 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . payload setup = 4 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . stage-in = 0 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . payload execution = 46 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . stage-out = 0 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | . log creation = 0 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,662 | INFO     | ..............................
[2025-11-26 18:03:02] 2025-11-27 02:02:05,663 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 18:03:02] 2025-11-27 02:02:05,663 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898643128/pilotlog.txt
[2025-11-26 18:03:02] [end log extracts]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,673 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 18:03:02] 2025-11-27 02:02:05,674 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 18:03:02] 2025-11-27 02:02:05,731 | INFO     | 
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | job summary report
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | --------------------------------------------------
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | PanDA job id: 6898643128
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | task id: 47556185
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 17:59:57,232 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | pilot state: failed 
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | transexitcode: 65
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | exeerrorcode: 65
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | exitcode: 65
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | cpuconsumptiontime: 39 s
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | nevents: 0
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | neventsw: 0
[2025-11-26 18:03:02] 2025-11-27 02:02:05,732 | INFO     | pid: 2010976
[2025-11-26 18:03:02] 2025-11-27 02:02:05,733 | INFO     | pgrp: 2010976
[2025-11-26 18:03:02] 2025-11-27 02:02:05,733 | INFO     | corecount: 12
[2025-11-26 18:03:02] 2025-11-27 02:02:05,733 | INFO     | event service: False
[2025-11-26 18:03:02] 2025-11-27 02:02:05,733 | INFO     | sizes: {0: 2284311, 4: 2284573, 11: 2284601, 54: 2310081, 55: 2314371, 56: 2314399, 176: 2314753}
[2025-11-26 18:03:02] 2025-11-27 02:02:05,733 | INFO     | --------------------------------------------------
[2025-11-26 18:03:02] 2025-11-27 02:02:05,733 | INFO     | 
[2025-11-26 18:03:02] 2025-11-27 02:02:05,733 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 18:03:02] 2025-11-27 02:02:05,748 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,748 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,748 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,748 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,748 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,748 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,748 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,748 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,748 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,748 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,748 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,748 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,748 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,749 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,749 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,749 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,749 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,749 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:03:02] 2025-11-27 02:02:05,749 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,749 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:03:02] 2025-11-27 02:02:05,749 | INFO     | job 6898643128 has completed (purged errors)
[2025-11-26 18:03:02] 2025-11-27 02:02:05,749 | INFO     | overall cleanup function is called
[2025-11-26 18:03:02] 2025-11-27 02:02:06,754 | INFO     | --- collectZombieJob: --- 10, [2010976]
[2025-11-26 18:03:02] 2025-11-27 02:02:06,754 | INFO     | zombie collector waiting for pid 2010976
[2025-11-26 18:03:02] 2025-11-27 02:02:06,754 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:03:02] 2025-11-27 02:02:06,754 | INFO     | collected zombie processes
[2025-11-26 18:03:02] 2025-11-27 02:02:06,754 | INFO     | will attempt to kill all subprocesses of pid=2010976
[2025-11-26 18:03:02] 2025-11-27 02:02:06,915 | INFO     | process IDs to be killed: [2010976] (in reverse order)
[2025-11-26 18:03:02] 2025-11-27 02:02:06,977 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:03:02] 2025-11-27 02:02:06,978 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:03:02] 2025-11-27 02:02:06,985 | INFO     | did not find any defunct processes belonging to 2010976
[2025-11-26 18:03:02] 2025-11-27 02:02:06,993 | INFO     | did not find any defunct processes belonging to 2010976
[2025-11-26 18:03:02] 2025-11-27 02:02:06,994 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:03:02] 2025-11-27 02:02:06,994 | INFO     | ready for new job
[2025-11-26 18:03:02] 2025-11-27 02:02:06,994 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:03:02] 2025-11-27 02:02:06,996 | INFO     | ***************************************
[2025-11-26 18:03:02] 2025-11-27 02:02:06,996 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:03:02] 2025-11-27 02:02:06,996 | INFO     | ***************************************
[2025-11-26 18:03:02] 2025-11-27 02:02:06,996 | INFO     | 
[2025-11-26 18:03:02] 2025-11-27 02:02:06,998 | INFO     | architecture information:
[2025-11-26 18:03:02] 2025-11-27 02:02:06,999 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:03:02] 2025-11-27 02:02:07,009 | INFO     | cat /etc/os-release:
[2025-11-26 18:03:02] NAME="CentOS Linux"
[2025-11-26 18:03:02] VERSION="7 (Core)"
[2025-11-26 18:03:02] ID="centos"
[2025-11-26 18:03:02] ID_LIKE="rhel fedora"
[2025-11-26 18:03:02] VERSION_ID="7"
[2025-11-26 18:03:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:03:02] ANSI_COLOR="0;31"
[2025-11-26 18:03:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:03:02] HOME_URL="https://www.centos.org/"
[2025-11-26 18:03:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:03:02] 
[2025-11-26 18:03:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:03:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:03:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:03:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:03:02] 
[2025-11-26 18:03:02] 2025-11-27 02:02:07,010 | INFO     | ***************************************
[2025-11-26 18:03:02] 2025-11-27 02:02:07,513 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 18:03:02] 2025-11-27 02:02:07,526 | INFO     | sufficient remaining disk space (2005779087360 B)
[2025-11-26 18:03:02] 2025-11-27 02:02:07,526 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:03:02] 2025-11-27 02:02:07,526 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:03:02] 2025-11-27 02:02:07,526 | INFO     | update_server=False
[2025-11-26 18:03:02] 2025-11-27 02:02:07,526 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:03:02] 2025-11-27 02:02:07,527 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:03:02] 2025-11-27 02:02:07,929 | INFO     | all data control threads have been joined
[2025-11-26 18:03:02] 2025-11-27 02:02:08,080 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:03:02] 2025-11-27 02:02:08,108 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:03:02] 2025-11-27 02:02:08,109 | INFO     | aborting loop
[2025-11-26 18:03:02] 2025-11-27 02:02:08,531 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:03:02] 2025-11-27 02:02:08,532 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:03:02] 2025-11-27 02:02:08,550 | INFO     | all payload control threads have been joined
[2025-11-26 18:03:02] 2025-11-27 02:02:08,638 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:03:02] 2025-11-27 02:02:08,721 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:03:02] 2025-11-27 02:02:08,722 | INFO     | all job control threads have been joined
[2025-11-26 18:03:02] 2025-11-27 02:02:08,785 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:03:02] 2025-11-27 02:02:08,933 | INFO     | [data] control thread has finished
[2025-11-26 18:03:02] 2025-11-27 02:02:09,000 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:03:02] 2025-11-27 02:02:09,114 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:03:02] 2025-11-27 02:02:09,556 | INFO     | [payload] control thread has finished
[2025-11-26 18:03:02] 2025-11-27 02:02:09,586 | INFO     | [job] validate thread has finished
[2025-11-26 18:03:02] 2025-11-27 02:02:09,713 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:03:02] 2025-11-27 02:02:09,729 | INFO     | [job] control thread has finished
[2025-11-26 18:03:02] 2025-11-27 02:02:09,826 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:03:02] 2025-11-27 02:02:09,874 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:03:02] 2025-11-27 02:02:09,992 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:03:02] 2025-11-27 02:02:10,085 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:03:02] 2025-11-27 02:02:12,791 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:03:02] 2025-11-27 02:02:37,989 | INFO     | PID=2004407 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:03:02] 2025-11-27 02:02:37,990 | INFO     | .. there are 21 such processes running
[2025-11-26 18:03:02] 2025-11-27 02:02:37,990 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:03:02] 2025-11-27 02:02:37,990 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:03:02] 2025-11-27 02:02:37,990 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:03:02] 2025-11-27 02:02:55,973 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:03:02] 2025-11-27 02:02:56,822 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139844146702144)>', '<ExcThread(monitor, started 139843749254912)>']
[2025-11-26 18:03:02] 2025-11-27 02:02:57,087 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:03:02] 2025-11-27 02:02:57,087 | INFO     | [monitor] control thread has ended
[2025-11-26 18:03:02] 2025-11-27 02:03:01,847 | INFO     | all workflow threads have been joined
[2025-11-26 18:03:02] 2025-11-27 02:03:01,848 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:03:02] 2025-11-27 02:03:01,848 | INFO     | traces error code: 0
[2025-11-26 18:03:02] 2025-11-27 02:03:01,848 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:03:02] 2025-11-27 02:03:01,959 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:03:02] 2025-11-27 02:03:01,961 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:03:02] 2025-11-27 02:03:01,963 [wrapper] pilotpid: 2004407
[2025-11-26 18:03:02] 2025-11-27 02:03:01,965 [wrapper] Pilot exit status: 0
[2025-11-26 18:03:02] 2025-11-27 02:03:01,972 [wrapper] pandaids: 6898643128
[2025-11-26 18:03:02] 2025-11-27 02:03:02,009 [wrapper] cleanup supervisor_pilot 2004413 2004408
[2025-11-26 18:03:02] 2025-11-27 02:03:02,011 [wrapper] Test setup, not cleaning
[2025-11-26 18:03:02] 2025-11-27 02:03:02,012 [wrapper] apfmon messages muted
[2025-11-26 18:03:02] 2025-11-27 02:03:02,014 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:03:02] 2025-11-27 02:03:02,016 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:03:02]  *** Error codes and diagnostics ***
[2025-11-26 18:03:02]     "exeErrorCode": 65,
[2025-11-26 18:03:02]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 18:03:02]     "pilotErrorCode": 1305,
[2025-11-26 18:03:02]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 18:03:02]  *** Listing of results directory ***
[2025-11-26 18:03:02] total 405464
[2025-11-26 18:03:02] -rw-r--r--. 1 boinc boinc    576529 Nov 26 08:12 pilot3.tar.gz
[2025-11-26 18:03:02] -rwx------. 1 boinc boinc     36292 Nov 26 08:36 runpilot2-wrapper.sh
[2025-11-26 18:03:02] -rw-r--r--. 1 boinc boinc      5112 Nov 26 08:37 queuedata.json
[2025-11-26 18:03:02] -rw-r--r--. 1 boinc boinc       100 Nov 26 17:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:03:02] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 17:58 run_atlas
[2025-11-26 18:03:02] -rw-r--r--. 1 boinc boinc       105 Nov 26 17:58 job.xml
[2025-11-26 18:03:02] -rw-r--r--. 1 boinc boinc      6595 Nov 26 17:58 init_data.xml
[2025-11-26 18:03:02] -rw-r--r--. 2 boinc boinc 411000300 Nov 26 17:58 EVNT.47483658._004290.pool.root.1
[2025-11-26 18:03:02] -rw-r--r--. 2 boinc boinc     15847 Nov 26 17:58 start_atlas.sh
[2025-11-26 18:03:02] drwxrwx--x. 2 boinc boinc      4096 Nov 26 17:58 shared
[2025-11-26 18:03:02] -rw-r--r--. 2 boinc boinc    590103 Nov 26 17:58 input.tar.gz
[2025-11-26 18:03:02] -rw-r--r--. 1 boinc boinc         0 Nov 26 17:58 boinc_lockfile
[2025-11-26 18:03:02] -rw-r--r--. 1 boinc boinc      2786 Nov 26 17:58 pandaJob.out
[2025-11-26 18:03:02] -rw-------. 1 boinc boinc    991530 Nov 26 17:58 agis_schedconf.cvmfs.json
[2025-11-26 18:03:02] -rw-------. 1 boinc boinc   1516240 Nov 26 17:58 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:03:02] drwx------. 5 boinc boinc      4096 Nov 26 17:58 pilot3
[2025-11-26 18:03:02] -rw-r--r--. 1 boinc boinc       523 Nov 26 17:59 boinc_task_state.xml
[2025-11-26 18:03:02] -rw-------. 1 boinc boinc       952 Nov 26 18:00 memory_monitor_summary.json
[2025-11-26 18:03:02] -rw-------. 1 boinc boinc     47887 Nov 26 18:00 log.47556185._000534.job.log.tgz.1
[2025-11-26 18:03:02] -rw-------. 1 boinc boinc        95 Nov 26 18:01 pilot_heartbeat.json
[2025-11-26 18:03:02] -rw-------. 1 boinc boinc     10318 Nov 26 18:02 heartbeat.json
[2025-11-26 18:03:02] -rw-r--r--. 1 boinc boinc        23 Nov 26 18:02 wrapper_checkpoint.txt
[2025-11-26 18:03:02] -rw-r--r--. 1 boinc boinc      8192 Nov 26 18:02 boinc_mmap_file
[2025-11-26 18:03:02] -rw-------. 1 boinc boinc      4823 Nov 26 18:03 pilotlog.txt
[2025-11-26 18:03:02] -rw-------. 1 boinc boinc     92502 Nov 26 18:03 log.47556185._000534.job.log.1
[2025-11-26 18:03:02] -rw-------. 1 boinc boinc       186 Nov 26 18:03 output.list
[2025-11-26 18:03:02] -rw-r--r--. 1 boinc boinc       620 Nov 26 18:03 runtime_log
[2025-11-26 18:03:02] -rw-------. 1 boinc boinc    163840 Nov 26 18:03 result.tar.gz
[2025-11-26 18:03:02] -rw-r--r--. 1 boinc boinc      8636 Nov 26 18:03 runtime_log.err
[2025-11-26 18:03:02] -rw-------. 1 boinc boinc       645 Nov 26 18:03 PCdKDmSgXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoGNKDmwwbJhm.diag
[2025-11-26 18:03:02] -rw-r--r--. 1 boinc boinc     22394 Nov 26 18:03 stderr.txt
[2025-11-26 18:03:02] No HITS result produced
[2025-11-26 18:03:02]  *** Contents of shared directory: ***
[2025-11-26 18:03:02] total 402128
[2025-11-26 18:03:02] -rw-r--r--. 2 boinc boinc 411000300 Nov 26 17:58 ATLAS.root_0
[2025-11-26 18:03:02] -rw-r--r--. 2 boinc boinc     15847 Nov 26 17:58 start_atlas.sh
[2025-11-26 18:03:02] -rw-r--r--. 2 boinc boinc    590103 Nov 26 17:58 input.tar.gz
[2025-11-26 18:03:02] -rw-------. 1 boinc boinc    163840 Nov 26 18:03 result.tar.gz
18:03:03 (2000754): run_atlas exited; CPU time 38.079331
18:03:03 (2000754): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN