Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:08:27 (3057045): wrapper (7.7.26015): starting
18:08:27 (3057045): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 18:08:27] Arguments: --nthreads 8
[2025-11-26 18:08:27] Threads: 8
[2025-11-26 18:08:27] Checking for CVMFS
[2025-11-26 18:08:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:08:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:08:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:08:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:08:28] 2.11.3.0 52815 29204 194148 153342 2 133 42897035 45568000 23076 130560 0 175530816 99.808 97438845 24957 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 18:08:28] CVMFS is ok
[2025-11-26 18:08:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:08:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:08:28] Further information can be found at the LHC@home message board.
[2025-11-26 18:08:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:08:28] Checking for apptainer binary...
[2025-11-26 18:08:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:08:28] Running /usr/bin/apptainer --version
[2025-11-26 18:08:28] apptainer version 1.4.1-1.el9
[2025-11-26 18:08:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:08:28] wns0013.triumf.lcg
[2025-11-26 18:08:28] apptainer works
[2025-11-26 18:08:28] Set ATHENA_PROC_NUMBER=8
[2025-11-26 18:08:28] Set ATHENA_CORE_NUMBER=8
[2025-11-26 18:08:28] Starting ATLAS job with PandaID=6898687106
[2025-11-26 18:08:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:16:04]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:16:04] 2025-11-27 02:15:13,765 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 18:16:04] 2025-11-27 02:15:13,766 | WARNING  | wrong length of table data, x=[1764209412.0, 1764209473.0, 1764209534.0], y=[1486.0, 492868.0, 414099.0] (must be same and length>=4)
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | ..............................
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . Timing measurements:
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . get job = 0 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . initial setup = 6 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . payload setup = 19 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . stage-in = 0 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . payload execution = 182 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . stage-out = 0 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . log creation = 0 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | ..............................
[2025-11-26 18:16:04] 2025-11-27 02:15:13,768 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 18:16:04] 2025-11-27 02:15:13,768 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898687106/pilotlog.txt
[2025-11-26 18:16:04] 2025-11-27 02:15:13,786 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 18:16:04] - Log from pilotlog.txt -
[2025-11-26 18:16:04] 2025-11-27 02:15:13,763 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898687106/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:16:04] 2025-11-27 02:15:13,764 | INFO     | extracted standard info from prmon json
[2025-11-26 18:16:04] 2025-11-27 02:15:13,764 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:16:04] 2025-11-27 02:15:13,765 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:16:04] 2025-11-27 02:15:13,765 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 18:16:04] 2025-11-27 02:15:13,765 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 18:16:04] 2025-11-27 02:15:13,766 | WARNING  | wrong length of table data, x=[1764209412.0, 1764209473.0, 1764209534.0], y=[1486.0, 492868.0, 414099.0] (must be same and length>=4)
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | ..............................
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . Timing measurements:
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . get job = 0 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . initial setup = 6 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . payload setup = 19 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . stage-in = 0 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . payload execution = 182 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . stage-out = 0 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . log creation = 0 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | ..............................
[2025-11-26 18:16:04] 2025-11-27 02:15:13,768 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 18:16:04] 2025-11-27 02:15:13,768 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898687106/pilotlog.txt
[2025-11-26 18:16:04] 2025-11-27 02:15:13,786 | WARNING  | 
[2025-11-26 18:16:04] [begin log extracts]
[2025-11-26 18:16:04] - Log from pilotlog.txt -
[2025-11-26 18:16:04] 2025-11-27 02:15:13,763 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898687106/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:16:04] 2025-11-27 02:15:13,764 | INFO     | extracted standard info from prmon json
[2025-11-26 18:16:04] 2025-11-27 02:15:13,764 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:16:04] 2025-11-27 02:15:13,765 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:16:04] 2025-11-27 02:15:13,765 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 18:16:04] 2025-11-27 02:15:13,765 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 18:16:04] 2025-11-27 02:15:13,766 | WARNING  | wrong length of table data, x=[1764209412.0, 1764209473.0, 1764209534.0], y=[1486.0, 492868.0, 414099.0] (must be same and length>=4)
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | ..............................
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . Timing measurements:
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . get job = 0 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . initial setup = 6 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . payload setup = 19 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . stage-in = 0 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . payload execution = 182 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . stage-out = 0 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | . log creation = 0 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,767 | INFO     | ..............................
[2025-11-26 18:16:04] 2025-11-27 02:15:13,768 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 18:16:04] 2025-11-27 02:15:13,768 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898687106/pilotlog.txt
[2025-11-26 18:16:04] [end log extracts]
[2025-11-26 18:16:04] 2025-11-27 02:15:13,786 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 18:16:04] 2025-11-27 02:15:13,787 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 18:16:04] 2025-11-27 02:15:13,860 | INFO     | 
[2025-11-26 18:16:04] 2025-11-27 02:15:13,860 | INFO     | job summary report
[2025-11-26 18:16:04] 2025-11-27 02:15:13,860 | INFO     | --------------------------------------------------
[2025-11-26 18:16:04] 2025-11-27 02:15:13,860 | INFO     | PanDA job id: 6898687106
[2025-11-26 18:16:04] 2025-11-27 02:15:13,860 | INFO     | task id: 47556173
[2025-11-26 18:16:04] 2025-11-27 02:15:13,861 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 18:12:47,077 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 18:16:04] 2025-11-27 02:15:13,861 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 18:16:04] 2025-11-27 02:15:13,861 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:16:04] 2025-11-27 02:15:13,861 | INFO     | pilot state: failed 
[2025-11-26 18:16:04] 2025-11-27 02:15:13,861 | INFO     | transexitcode: 65
[2025-11-26 18:16:04] 2025-11-27 02:15:13,861 | INFO     | exeerrorcode: 65
[2025-11-26 18:16:04] 2025-11-27 02:15:13,861 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 18:16:04] 2025-11-27 02:15:13,861 | INFO     | exitcode: 65
[2025-11-26 18:16:04] 2025-11-27 02:15:13,861 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 18:16:04] 2025-11-27 02:15:13,861 | INFO     | cpuconsumptiontime: 48 s
[2025-11-26 18:16:04] 2025-11-27 02:15:13,861 | INFO     | nevents: 0
[2025-11-26 18:16:04] 2025-11-27 02:15:13,861 | INFO     | neventsw: 0
[2025-11-26 18:16:04] 2025-11-27 02:15:13,861 | INFO     | pid: 3067468
[2025-11-26 18:16:04] 2025-11-27 02:15:13,862 | INFO     | pgrp: 3067468
[2025-11-26 18:16:04] 2025-11-27 02:15:13,862 | INFO     | corecount: 8
[2025-11-26 18:16:04] 2025-11-27 02:15:13,862 | INFO     | event service: False
[2025-11-26 18:16:04] 2025-11-27 02:15:13,862 | INFO     | sizes: {0: 2283482, 1: 2284335, 12: 2284335, 18: 2284625, 23: 2284653, 203: 2310226, 205: 2314516, 208: 2314544, 344: 2314738}
[2025-11-26 18:16:04] 2025-11-27 02:15:13,862 | INFO     | --------------------------------------------------
[2025-11-26 18:16:04] 2025-11-27 02:15:13,862 | INFO     | 
[2025-11-26 18:16:04] 2025-11-27 02:15:13,862 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 18:16:04] 2025-11-27 02:15:14,057 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,057 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,057 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,058 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,058 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,058 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,058 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,058 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,058 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,058 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,058 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,058 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,058 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,058 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,058 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,059 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,059 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,059 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:16:04] 2025-11-27 02:15:14,059 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,059 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:16:04] 2025-11-27 02:15:14,059 | INFO     | job 6898687106 has completed (purged errors)
[2025-11-26 18:16:04] 2025-11-27 02:15:14,059 | INFO     | overall cleanup function is called
[2025-11-26 18:16:04] 2025-11-27 02:15:15,076 | INFO     | --- collectZombieJob: --- 10, [3067468]
[2025-11-26 18:16:04] 2025-11-27 02:15:15,076 | INFO     | zombie collector waiting for pid 3067468
[2025-11-26 18:16:04] 2025-11-27 02:15:15,076 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:16:04] 2025-11-27 02:15:15,076 | INFO     | collected zombie processes
[2025-11-26 18:16:04] 2025-11-27 02:15:15,076 | INFO     | will attempt to kill all subprocesses of pid=3067468
[2025-11-26 18:16:04] 2025-11-27 02:15:16,290 | INFO     | process IDs to be killed: [3067468] (in reverse order)
[2025-11-26 18:16:04] 2025-11-27 02:15:16,390 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:16:04] 2025-11-27 02:15:16,391 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:16:04] 2025-11-27 02:15:16,441 | INFO     | did not find any defunct processes belonging to 3067468
[2025-11-26 18:16:04] 2025-11-27 02:15:16,489 | INFO     | did not find any defunct processes belonging to 3067468
[2025-11-26 18:16:04] 2025-11-27 02:15:16,515 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:16:04] 2025-11-27 02:15:16,515 | INFO     | ready for new job
[2025-11-26 18:16:04] 2025-11-27 02:15:16,515 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:16:04] 2025-11-27 02:15:16,516 | INFO     | ***************************************
[2025-11-26 18:16:04] 2025-11-27 02:15:16,516 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:16:04] 2025-11-27 02:15:16,516 | INFO     | ***************************************
[2025-11-26 18:16:04] 2025-11-27 02:15:16,516 | INFO     | 
[2025-11-26 18:16:04] 2025-11-27 02:15:16,529 | INFO     | architecture information:
[2025-11-26 18:16:04] 2025-11-27 02:15:16,533 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:16:04] 2025-11-27 02:15:16,660 | INFO     | cat /etc/os-release:
[2025-11-26 18:16:04] NAME="CentOS Linux"
[2025-11-26 18:16:04] VERSION="7 (Core)"
[2025-11-26 18:16:04] ID="centos"
[2025-11-26 18:16:04] ID_LIKE="rhel fedora"
[2025-11-26 18:16:04] VERSION_ID="7"
[2025-11-26 18:16:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:16:04] ANSI_COLOR="0;31"
[2025-11-26 18:16:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:16:04] HOME_URL="https://www.centos.org/"
[2025-11-26 18:16:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:16:04] 
[2025-11-26 18:16:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:16:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:16:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:16:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:16:04] 
[2025-11-26 18:16:04] 2025-11-27 02:15:16,661 | INFO     | ***************************************
[2025-11-26 18:16:04] 2025-11-27 02:15:17,165 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 18:16:04] 2025-11-27 02:15:17,418 | INFO     | sufficient remaining disk space (1120611074048 B)
[2025-11-26 18:16:04] 2025-11-27 02:15:17,419 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:16:04] 2025-11-27 02:15:17,419 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:16:04] 2025-11-27 02:15:17,419 | INFO     | update_server=False
[2025-11-26 18:16:04] 2025-11-27 02:15:17,419 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:16:04] 2025-11-27 02:15:17,549 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:16:04] 2025-11-27 02:15:17,549 | INFO     | aborting loop
[2025-11-26 18:16:04] 2025-11-27 02:15:18,209 | INFO     | all data control threads have been joined
[2025-11-26 18:16:04] 2025-11-27 02:15:18,404 | INFO     | all job control threads have been joined
[2025-11-26 18:16:04] 2025-11-27 02:15:18,425 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:16:04] 2025-11-27 02:15:18,434 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:16:04] 2025-11-27 02:15:18,505 | INFO     | all payload control threads have been joined
[2025-11-26 18:16:04] 2025-11-27 02:15:18,555 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:16:04] 2025-11-27 02:15:18,671 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:16:04] 2025-11-27 02:15:18,679 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:16:04] 2025-11-27 02:15:18,896 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:16:04] 2025-11-27 02:15:19,050 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:16:04] 2025-11-27 02:15:19,215 | INFO     | [data] control thread has finished
[2025-11-26 18:16:04] 2025-11-27 02:15:19,410 | INFO     | [job] control thread has finished
[2025-11-26 18:16:04] 2025-11-27 02:15:19,511 | INFO     | [payload] control thread has finished
[2025-11-26 18:16:04] 2025-11-27 02:15:19,551 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:16:04] 2025-11-27 02:15:19,691 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:16:04] 2025-11-27 02:15:19,712 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:16:04] 2025-11-27 02:15:19,794 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:16:04] 2025-11-27 02:15:19,830 | INFO     | [job] validate thread has finished
[2025-11-26 18:16:04] 2025-11-27 02:15:19,830 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:16:04] 2025-11-27 02:15:19,902 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:16:04] 2025-11-27 02:15:20,441 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:16:04] 2025-11-27 02:15:23,700 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:16:04] 2025-11-27 02:15:46,444 | INFO     | PID=3060729 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:16:04] 2025-11-27 02:15:46,444 | INFO     | .. there are 26 such processes running
[2025-11-26 18:16:04] 2025-11-27 02:15:46,444 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:16:04] 2025-11-27 02:15:46,445 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:16:04] 2025-11-27 02:15:46,445 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:16:04] 2025-11-27 02:15:56,175 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:16:04] 2025-11-27 02:15:58,232 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139823016367936)>', '<ExcThread(monitor, started 139822609962752)>']
[2025-11-26 18:16:04] 2025-11-27 02:15:58,518 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:16:04] 2025-11-27 02:15:58,518 | INFO     | [monitor] control thread has ended
[2025-11-26 18:16:04] 2025-11-27 02:16:03,258 | INFO     | all workflow threads have been joined
[2025-11-26 18:16:04] 2025-11-27 02:16:03,258 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:16:04] 2025-11-27 02:16:03,258 | INFO     | traces error code: 0
[2025-11-26 18:16:04] 2025-11-27 02:16:03,259 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:16:04] 2025-11-27 02:16:03,842 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:16:04] 2025-11-27 02:16:03,849 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:16:04] 2025-11-27 02:16:03,868 [wrapper] pilotpid: 3060729
[2025-11-26 18:16:04] 2025-11-27 02:16:03,940 [wrapper] Pilot exit status: 0
[2025-11-26 18:16:04] 2025-11-27 02:16:04,086 [wrapper] pandaids: 6898687106
[2025-11-26 18:16:04] 2025-11-27 02:16:04,164 [wrapper] cleanup supervisor_pilot 3060735 3060730
[2025-11-26 18:16:04] 2025-11-27 02:16:04,167 [wrapper] Test setup, not cleaning
[2025-11-26 18:16:04] 2025-11-27 02:16:04,169 [wrapper] apfmon messages muted
[2025-11-26 18:16:04] 2025-11-27 02:16:04,170 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:16:04] 2025-11-27 02:16:04,172 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:16:04]  *** Error codes and diagnostics ***
[2025-11-26 18:16:04]     "exeErrorCode": 65,
[2025-11-26 18:16:04]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 18:16:04]     "pilotErrorCode": 1305,
[2025-11-26 18:16:04]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 18:16:04]  *** Listing of results directory ***
[2025-11-26 18:16:04] total 403420
[2025-11-26 18:16:04] -rw-r--r--. 1 boinc boinc    576529 Nov 26 08:12 pilot3.tar.gz
[2025-11-26 18:16:04] -rwx------. 1 boinc boinc     36292 Nov 26 08:36 runpilot2-wrapper.sh
[2025-11-26 18:16:04] -rw-r--r--. 1 boinc boinc      5112 Nov 26 08:37 queuedata.json
[2025-11-26 18:16:04] -rw-r--r--. 1 boinc boinc       100 Nov 26 18:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:16:04] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 18:08 run_atlas
[2025-11-26 18:16:04] -rw-r--r--. 1 boinc boinc       105 Nov 26 18:08 job.xml
[2025-11-26 18:16:04] -rw-r--r--. 1 boinc boinc      6445 Nov 26 18:08 init_data.xml
[2025-11-26 18:16:04] -rw-r--r--. 2 boinc boinc 408862629 Nov 26 18:08 EVNT.47483658._003223.pool.root.1
[2025-11-26 18:16:04] -rw-r--r--. 2 boinc boinc     15847 Nov 26 18:08 start_atlas.sh
[2025-11-26 18:16:04] drwxrwx--x. 2 boinc boinc      4096 Nov 26 18:08 shared
[2025-11-26 18:16:04] -rw-r--r--. 2 boinc boinc    590108 Nov 26 18:08 input.tar.gz
[2025-11-26 18:16:04] -rw-r--r--. 1 boinc boinc         0 Nov 26 18:08 boinc_lockfile
[2025-11-26 18:16:04] -rw-r--r--. 1 boinc boinc      2784 Nov 26 18:08 pandaJob.out
[2025-11-26 18:16:04] -rw-------. 1 boinc boinc    991530 Nov 26 18:08 agis_schedconf.cvmfs.json
[2025-11-26 18:16:04] -rw-------. 1 boinc boinc   1516240 Nov 26 18:08 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:16:04] drwx------. 5 boinc boinc      4096 Nov 26 18:08 pilot3
[2025-11-26 18:16:04] -rw-r--r--. 1 boinc boinc       524 Nov 26 18:11 boinc_task_state.xml
[2025-11-26 18:16:04] -rw-------. 1 boinc boinc       996 Nov 26 18:12 memory_monitor_summary.json
[2025-11-26 18:16:04] -rw-------. 1 boinc boinc     49342 Nov 26 18:12 log.47556173._001791.job.log.tgz.1
[2025-11-26 18:16:04] -rw-------. 1 boinc boinc        95 Nov 26 18:14 pilot_heartbeat.json
[2025-11-26 18:16:04] -rw-------. 1 boinc boinc     10330 Nov 26 18:15 heartbeat.json
[2025-11-26 18:16:04] -rw-------. 1 boinc boinc      4823 Nov 26 18:16 pilotlog.txt
[2025-11-26 18:16:04] -rw-r--r--. 1 boinc boinc      8192 Nov 26 18:16 boinc_mmap_file
[2025-11-26 18:16:04] -rw-r--r--. 1 boinc boinc        23 Nov 26 18:16 wrapper_checkpoint.txt
[2025-11-26 18:16:04] -rw-------. 1 boinc boinc    112580 Nov 26 18:16 log.47556173._001791.job.log.1
[2025-11-26 18:16:04] -rw-------. 1 boinc boinc       186 Nov 26 18:16 output.list
[2025-11-26 18:16:04] -rw-r--r--. 1 boinc boinc       620 Nov 26 18:16 runtime_log
[2025-11-26 18:16:04] -rw-------. 1 boinc boinc    184320 Nov 26 18:16 result.tar.gz
[2025-11-26 18:16:04] -rw-r--r--. 1 boinc boinc      8634 Nov 26 18:16 runtime_log.err
[2025-11-26 18:16:04] -rw-------. 1 boinc boinc       646 Nov 26 18:16 CZ0MDmRgXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOGNKDma5h1To.diag
[2025-11-26 18:16:04] -rw-r--r--. 1 boinc boinc     22564 Nov 26 18:16 stderr.txt
[2025-11-26 18:16:04] No HITS result produced
[2025-11-26 18:16:04]  *** Contents of shared directory: ***
[2025-11-26 18:16:04] total 400060
[2025-11-26 18:16:04] -rw-r--r--. 2 boinc boinc 408862629 Nov 26 18:08 ATLAS.root_0
[2025-11-26 18:16:04] -rw-r--r--. 2 boinc boinc     15847 Nov 26 18:08 start_atlas.sh
[2025-11-26 18:16:04] -rw-r--r--. 2 boinc boinc    590108 Nov 26 18:08 input.tar.gz
[2025-11-26 18:16:04] -rw-------. 1 boinc boinc    184320 Nov 26 18:16 result.tar.gz
18:16:06 (3057045): run_atlas exited; CPU time 55.208299
18:16:06 (3057045): called boinc_finish(0)

</stderr_txt>
]]>

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