Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:48:50 (1126): wrapper (7.7.26015): starting
20:48:50 (1126): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 20:48:50] Arguments: --nthreads 8
[2025-11-26 20:48:50] Threads: 8
[2025-11-26 20:48:50] Checking for CVMFS
[2025-11-26 20:48:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 20:48:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 20:48:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 20:48:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 20:48:51] 2.11.2.0 14221 118468 134636 153342 3 87 10334342 18432000 943 130560 0 87798312 99.975 4923416 30721 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 20:48:51] CVMFS is ok
[2025-11-26 20:48:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 20:48:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 20:48:51] Further information can be found at the LHC@home message board.
[2025-11-26 20:48:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 20:48:51] Checking for apptainer binary...
[2025-11-26 20:48:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 20:48:51] Running /usr/bin/apptainer --version
[2025-11-26 20:48:51] apptainer version 1.3.2-1.el7
[2025-11-26 20:48:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 20:48:52] c-206-9.aglt2.org
[2025-11-26 20:48:52] apptainer works
[2025-11-26 20:48:52] Set ATHENA_PROC_NUMBER=8
[2025-11-26 20:48:52] Set ATHENA_CORE_NUMBER=8
[2025-11-26 20:48:52] Starting ATLAS job with PandaID=6898686934
[2025-11-26 20:48:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:28:59]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:28:59] 2025-11-27 20:27:51,382 | INFO     | time since job start (67129s) is within the limit (172800.0s)
[2025-11-27 15:28:59] 2025-11-27 20:27:51,624 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 15:28:59] 2025-11-27 20:27:51,628 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2389.1666666666665
[2025-11-27 15:28:59] 2025-11-27 20:27:51,630 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898686934/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 15:28:59] 2025-11-27 20:27:51,631 | INFO     | extracted standard info from prmon json
[2025-11-27 15:28:59] 2025-11-27 20:27:51,631 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 15:28:59] 2025-11-27 20:27:51,631 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 15:28:59] 2025-11-27 20:27:51,646 | INFO     | fitting pss+swap vs Time
[2025-11-27 15:28:59] 2025-11-27 20:27:51,647 | INFO     | sum of square deviations: 412720806176.7601
[2025-11-27 15:28:59] 2025-11-27 20:27:51,669 | INFO     | sum of deviations: 2265428574829.762
[2025-11-27 15:28:59] 2025-11-27 20:27:51,669 | INFO     | mean x: 1764241686.22
[2025-11-27 15:28:59] 2025-11-27 20:27:51,669 | INFO     | mean y: 2865137.5836363635
[2025-11-27 15:28:59] 2025-11-27 20:27:51,669 | INFO     | intersect: -9681074874.77643
[2025-11-27 15:28:59] 2025-11-27 20:27:51,670 | INFO     | chi2: 4.436150247741238
[2025-11-27 15:28:59] 2025-11-27 20:27:51,671 | INFO     | sum of square deviations: 407118579899.1563
[2025-11-27 15:28:59] 2025-11-27 20:27:51,692 | INFO     | sum of deviations: 2561089129673.6924
[2025-11-27 15:28:59] 2025-11-27 20:27:51,693 | INFO     | mean x: 1764241533.7232876
[2025-11-27 15:28:59] 2025-11-27 20:27:51,693 | INFO     | mean y: 2873181.596347032
[2025-11-27 15:28:59] 2025-11-27 20:27:51,693 | INFO     | intersect: -11095563581.610975
[2025-11-27 15:28:59] 2025-11-27 20:27:51,694 | INFO     | chi2: 2.258495634001837
[2025-11-27 15:28:59] 2025-11-27 20:27:51,694 | INFO     | current chi2=2.258495634001837 (change=49.08883811697317 %)
[2025-11-27 15:28:59] 2025-11-27 20:27:51,695 | INFO     | sum of square deviations: 401567084791.3807
[2025-11-27 15:28:59] 2025-11-27 20:27:51,722 | INFO     | sum of deviations: 2579853216938.3364
[2025-11-27 15:28:59] 2025-11-27 20:27:51,722 | INFO     | mean x: 1764241381.223853
[2025-11-27 15:28:59] 2025-11-27 20:27:51,722 | INFO     | mean y: 2873693.748623853
[2025-11-27 15:28:59] 2025-11-27 20:27:51,723 | INFO     | intersect: -11331431270.939022
[2025-11-27 15:28:59] 2025-11-27 20:27:51,724 | INFO     | chi2: 2.145125720743386
[2025-11-27 15:28:59] 2025-11-27 20:27:51,724 | INFO     | current chi2=2.145125720743386 (change=5.0197092060599005 %)
[2025-11-27 15:28:59] 2025-11-27 20:27:51,724 | INFO     | right removable region: 1089
[2025-11-27 15:28:59] 2025-11-27 20:27:51,726 | INFO     | sum of square deviations: 407118096779.1573
[2025-11-27 15:28:59] 2025-11-27 20:27:51,769 | INFO     | sum of deviations: 2005725355028.2732
[2025-11-27 15:28:59] 2025-11-27 20:27:51,769 | INFO     | mean x: 1764241838.7232876
[2025-11-27 15:28:59] 2025-11-27 20:27:51,769 | INFO     | mean y: 2872196.624657534
[2025-11-27 15:28:59] 2025-11-27 20:27:51,769 | INFO     | intersect: -8688916786.2869
[2025-11-27 15:28:59] 2025-11-27 20:27:51,771 | INFO     | chi2: 2.616646783205554
[2025-11-27 15:28:59] 2025-11-27 20:27:51,771 | INFO     | current chi2=2.616646783205554 (change=41.01537060116761 %)
[2025-11-27 15:28:59] 2025-11-27 20:27:51,773 | INFO     | sum of square deviations: 401566518589.38
[2025-11-27 15:28:59] 2025-11-27 20:27:51,811 | INFO     | sum of deviations: 1921682049568.2483
[2025-11-27 15:28:59] 2025-11-27 20:27:51,812 | INFO     | mean x: 1764241991.223853
[2025-11-27 15:28:59] 2025-11-27 20:27:51,812 | INFO     | mean y: 2874504.7981651374
[2025-11-27 15:28:59] 2025-11-27 20:27:51,812 | INFO     | intersect: -8439841729.460821
[2025-11-27 15:28:59] 2025-11-27 20:27:51,814 | INFO     | chi2: 2.5417496784191447
[2025-11-27 15:28:59] 2025-11-27 20:27:51,814 | INFO     | current chi2=2.5417496784191447 (change=2.8623314872730257 %)
[2025-11-27 15:28:59] 2025-11-27 20:27:51,814 | INFO     | left removable region: 20
[2025-11-27 15:28:59] 2025-11-27 20:27:51,816 | INFO     | sum of square deviations: 378801166357.3288
[2025-11-27 15:28:59] 2025-11-27 20:27:51,856 | INFO     | sum of deviations: 2112475023880.3196
[2025-11-27 15:28:59] 2025-11-27 20:27:51,856 | INFO     | mean x: 1764241960.7287185
[2025-11-27 15:28:59] 2025-11-27 20:27:51,857 | INFO     | mean y: 2886509.3217960712
[2025-11-27 15:28:59] 2025-11-27 20:27:51,857 | INFO     | intersect: -9835829442.797012
[2025-11-27 15:28:59] 2025-11-27 20:27:51,858 | INFO     | chi2: 0.19991151635213497
[2025-11-27 15:28:59] 2025-11-27 20:27:51,859 | INFO     | current memory leak: 5.58 B/s (using 1069 data points, chi2=0.20)
[2025-11-27 15:28:59] 2025-11-27 20:27:51,860 | INFO     | could have reported an average CPU frequency of 2608 MHz (40 samples)
[2025-11-27 15:28:59] 2025-11-27 20:27:51,860 | INFO     | ..............................
[2025-11-27 15:28:59] 2025-11-27 20:27:51,860 | INFO     | . Timing measurements:
[2025-11-27 15:28:59] 2025-11-27 20:27:51,860 | INFO     | . get job = 0 s
[2025-11-27 15:28:59] 2025-11-27 20:27:51,861 | INFO     | . initial setup = 2 s
[2025-11-27 15:28:59] 2025-11-27 20:27:51,861 | INFO     | . payload setup = 4 s
[2025-11-27 15:28:59] 2025-11-27 20:27:51,861 | INFO     | . stage-in = 0 s
[2025-11-27 15:28:59] 2025-11-27 20:27:51,861 | INFO     | . payload execution = 67093 s
[2025-11-27 15:28:59] 2025-11-27 20:27:51,861 | INFO     | . stage-out = 3 s
[2025-11-27 15:28:59] 2025-11-27 20:27:51,861 | INFO     | . log creation = 0 s
[2025-11-27 15:28:59] 2025-11-27 20:27:51,862 | INFO     | ..............................
[2025-11-27 15:28:59] 2025-11-27 20:27:52,455 | INFO     | 
[2025-11-27 15:28:59] 2025-11-27 20:27:52,456 | INFO     | job summary report
[2025-11-27 15:28:59] 2025-11-27 20:27:52,456 | INFO     | --------------------------------------------------
[2025-11-27 15:28:59] 2025-11-27 20:27:52,456 | INFO     | PanDA job id: 6898686934
[2025-11-27 15:28:59] 2025-11-27 20:27:52,456 | INFO     | task id: 47556173
[2025-11-27 15:28:59] 2025-11-27 20:27:52,456 | INFO     | errors: (none)
[2025-11-27 15:28:59] 2025-11-27 20:27:52,456 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:28:59] 2025-11-27 20:27:52,457 | INFO     | pilot state: finished 
[2025-11-27 15:28:59] 2025-11-27 20:27:52,457 | INFO     | transexitcode: 0
[2025-11-27 15:28:59] 2025-11-27 20:27:52,457 | INFO     | exeerrorcode: 0
[2025-11-27 15:28:59] 2025-11-27 20:27:52,457 | INFO     | exeerrordiag: 
[2025-11-27 15:28:59] 2025-11-27 20:27:52,457 | INFO     | exitcode: 0
[2025-11-27 15:28:59] 2025-11-27 20:27:52,458 | INFO     | exitmsg: OK
[2025-11-27 15:28:59] 2025-11-27 20:27:52,458 | INFO     | cpuconsumptiontime: 525696 s
[2025-11-27 15:28:59] 2025-11-27 20:27:52,458 | INFO     | nevents: 1000
[2025-11-27 15:28:59] 2025-11-27 20:27:52,458 | INFO     | neventsw: 0
[2025-11-27 15:28:59] 2025-11-27 20:27:52,458 | INFO     | pid: 12437
[2025-11-27 15:28:59] 2025-11-27 20:27:52,458 | INFO     | pgrp: 12437
[2025-11-27 15:28:59] 2025-11-27 20:27:52,459 | INFO     | corecount: 8
[2025-11-27 15:28:59] 2025-11-27 20:27:52,459 | INFO     | event service: False
[2025-11-27 15:28:59] 2025-11-27 20:27:52,459 | INFO     | sizes: {0: 2284316, 4: 2284578, 11: 2284606, 67102: 2340027, 67106: 2349021, 67109: 2349077, 67115: 2349451}
[2025-11-27 15:28:59] 2025-11-27 20:27:52,459 | INFO     | --------------------------------------------------
[2025-11-27 15:28:59] 2025-11-27 20:27:52,459 | INFO     | 
[2025-11-27 15:28:59] 2025-11-27 20:27:52,460 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 15:28:59] 2025-11-27 20:27:52,477 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,478 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,478 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,478 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,478 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,478 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,479 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,479 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,479 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,479 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,479 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,480 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,480 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,480 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,480 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,480 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,481 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,481 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:28:59] 2025-11-27 20:27:52,481 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,481 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:28:59] 2025-11-27 20:27:52,481 | INFO     | job 6898686934 has completed (purged errors)
[2025-11-27 15:28:59] 2025-11-27 20:27:52,482 | INFO     | overall cleanup function is called
[2025-11-27 15:28:59] 2025-11-27 20:27:53,498 | INFO     | --- collectZombieJob: --- 10, [12437]
[2025-11-27 15:28:59] 2025-11-27 20:27:53,498 | INFO     | zombie collector waiting for pid 12437
[2025-11-27 15:28:59] 2025-11-27 20:27:53,498 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:28:59] 2025-11-27 20:27:53,498 | INFO     | collected zombie processes
[2025-11-27 15:28:59] 2025-11-27 20:27:53,498 | INFO     | will attempt to kill all subprocesses of pid=12437
[2025-11-27 15:28:59] 2025-11-27 20:27:53,671 | INFO     | process IDs to be killed: [12437] (in reverse order)
[2025-11-27 15:28:59] 2025-11-27 20:27:53,732 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:28:59] 2025-11-27 20:27:53,732 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:28:59] 2025-11-27 20:27:53,738 | INFO     | did not find any defunct processes belonging to 12437
[2025-11-27 15:28:59] 2025-11-27 20:27:53,743 | INFO     | did not find any defunct processes belonging to 12437
[2025-11-27 15:28:59] 2025-11-27 20:27:53,745 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:28:59] 2025-11-27 20:27:53,745 | INFO     | ready for new job
[2025-11-27 15:28:59] 2025-11-27 20:27:53,745 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:28:59] 2025-11-27 20:27:53,750 | INFO     | ***************************************
[2025-11-27 15:28:59] 2025-11-27 20:27:53,750 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:28:59] 2025-11-27 20:27:53,750 | INFO     | ***************************************
[2025-11-27 15:28:59] 2025-11-27 20:27:53,751 | INFO     | 
[2025-11-27 15:28:59] 2025-11-27 20:27:53,752 | INFO     | architecture information:
[2025-11-27 15:28:59] 2025-11-27 20:27:53,752 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:28:59] 2025-11-27 20:27:53,766 | INFO     | cat /etc/os-release:
[2025-11-27 15:28:59] NAME="CentOS Linux"
[2025-11-27 15:28:59] VERSION="7 (Core)"
[2025-11-27 15:28:59] ID="centos"
[2025-11-27 15:28:59] ID_LIKE="rhel fedora"
[2025-11-27 15:28:59] VERSION_ID="7"
[2025-11-27 15:28:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:28:59] ANSI_COLOR="0;31"
[2025-11-27 15:28:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:28:59] HOME_URL="https://www.centos.org/"
[2025-11-27 15:28:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:28:59] 
[2025-11-27 15:28:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:28:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:28:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:28:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:28:59] 
[2025-11-27 15:28:59] 2025-11-27 20:27:53,766 | INFO     | ***************************************
[2025-11-27 15:28:59] 2025-11-27 20:27:54,267 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 15:28:59] 2025-11-27 20:27:54,286 | INFO     | sufficient remaining disk space (24899485696 B)
[2025-11-27 15:28:59] 2025-11-27 20:27:54,286 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:28:59] 2025-11-27 20:27:54,287 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:28:59] 2025-11-27 20:27:54,287 | INFO     | update_server=False
[2025-11-27 15:28:59] 2025-11-27 20:27:54,287 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:28:59] 2025-11-27 20:27:54,437 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 15:28:59] 2025-11-27 20:27:54,437 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 15:28:59] 2025-11-27 20:27:54,437 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:28:59] 2025-11-27 20:27:54,437 | INFO     | will abort loop
[2025-11-27 15:28:59] 2025-11-27 20:27:54,466 | INFO     | all data control threads have been joined
[2025-11-27 15:28:59] 2025-11-27 20:27:54,857 | INFO     | all payload control threads have been joined
[2025-11-27 15:28:59] 2025-11-27 20:27:55,292 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:28:59] 2025-11-27 20:27:55,443 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:28:59] 2025-11-27 20:27:55,472 | INFO     | [data] control thread has finished
[2025-11-27 15:28:59] 2025-11-27 20:27:55,681 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:28:59] 2025-11-27 20:27:55,742 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:28:59] 2025-11-27 20:27:55,834 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:28:59] 2025-11-27 20:27:55,862 | INFO     | [payload] control thread has finished
[2025-11-27 15:28:59] 2025-11-27 20:27:55,968 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:28:59] 2025-11-27 20:27:55,988 | INFO     | all job control threads have been joined
[2025-11-27 15:28:59] 2025-11-27 20:27:56,255 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:28:59] 2025-11-27 20:27:56,321 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:28:59] 2025-11-27 20:27:56,513 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:28:59] 2025-11-27 20:27:56,630 | INFO     | [job] validate thread has finished
[2025-11-27 15:28:59] 2025-11-27 20:27:56,745 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:28:59] 2025-11-27 20:27:56,775 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:28:59] 2025-11-27 20:27:56,994 | INFO     | [job] control thread has finished
[2025-11-27 15:28:59] 2025-11-27 20:27:57,025 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:28:59] 2025-11-27 20:27:57,748 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:28:59] 2025-11-27 20:27:58,030 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:28:59] 2025-11-27 20:28:00,783 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:28:59] 2025-11-27 20:28:24,594 | INFO     | PID=4973 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 15:28:59] 2025-11-27 20:28:24,595 | INFO     | .. there are 3 such processes running
[2025-11-27 15:28:59] 2025-11-27 20:28:24,595 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:28:59] 2025-11-27 20:28:24,596 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:28:59] 2025-11-27 20:28:24,596 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:28:59] 2025-11-27 20:28:53,726 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:28:59] 2025-11-27 20:28:54,179 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139752451970880)>', '<ExcThread(monitor, started 139752145655552)>']
[2025-11-27 15:28:59] 2025-11-27 20:28:54,747 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:28:59] 2025-11-27 20:28:54,747 | INFO     | [monitor] control thread has ended
[2025-11-27 15:28:59] 2025-11-27 20:28:59,204 | INFO     | all workflow threads have been joined
[2025-11-27 15:28:59] 2025-11-27 20:28:59,204 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:28:59] 2025-11-27 20:28:59,204 | INFO     | traces error code: 0
[2025-11-27 15:28:59] 2025-11-27 20:28:59,204 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:28:59] 2025-11-27 20:28:59,291 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:28:59] 2025-11-27 20:28:59,293 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:28:59] 2025-11-27 20:28:59,295 [wrapper] pilotpid: 4973
[2025-11-27 15:28:59] 2025-11-27 20:28:59,297 [wrapper] Pilot exit status: 0
[2025-11-27 15:28:59] 2025-11-27 20:28:59,306 [wrapper] pandaids: 6898686934
[2025-11-27 15:28:59] 2025-11-27 20:28:59,335 [wrapper] cleanup supervisor_pilot 12053 4974
[2025-11-27 15:28:59] 2025-11-27 20:28:59,337 [wrapper] Test setup, not cleaning
[2025-11-27 15:28:59] 2025-11-27 20:28:59,339 [wrapper] apfmon messages muted
[2025-11-27 15:28:59] 2025-11-27 20:28:59,341 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:28:59] 2025-11-27 20:28:59,343 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:28:59]  *** Error codes and diagnostics ***
[2025-11-27 15:28:59]     "exeErrorCode": 0,
[2025-11-27 15:28:59]     "exeErrorDiag": "",
[2025-11-27 15:28:59]     "pilotErrorCode": 0,
[2025-11-27 15:28:59]     "pilotErrorDiag": "",
[2025-11-27 15:28:59]  *** Listing of results directory ***
[2025-11-27 15:28:59] total 1304900
[2025-11-27 15:28:59] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 15:28:59] -rwx------ 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-11-27 15:28:59] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-11-27 15:28:59] -rw-r--r-- 1 boincer umatlas       100 Nov 26 20:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:28:59] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 20:48 run_atlas
[2025-11-27 15:28:59] -rw-r--r-- 1 boincer umatlas       105 Nov 26 20:48 job.xml
[2025-11-27 15:28:59] -rw-r--r-- 2 boincer umatlas 407859050 Nov 26 20:48 EVNT.47483658._003221.pool.root.1
[2025-11-27 15:28:59] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 20:48 start_atlas.sh
[2025-11-27 15:28:59] drwxrwx--x 2 boincer umatlas      4096 Nov 26 20:48 shared
[2025-11-27 15:28:59] -rw-r--r-- 2 boincer umatlas    590105 Nov 26 20:48 input.tar.gz
[2025-11-27 15:28:59] -rw-r--r-- 1 boincer umatlas         0 Nov 26 20:48 boinc_lockfile
[2025-11-27 15:28:59] -rw-r--r-- 1 boincer umatlas      2787 Nov 26 20:48 pandaJob.out
[2025-11-27 15:28:59] -rw------- 1 boincer umatlas        57 Nov 26 20:48 setup.sh.local
[2025-11-27 15:28:59] -rw------- 1 boincer umatlas    991530 Nov 26 20:49 agis_schedconf.cvmfs.json
[2025-11-27 15:28:59] drwx------ 5 boincer umatlas      4096 Nov 26 20:49 pilot3
[2025-11-27 15:28:59] -rw-r--r-- 1 boincer umatlas       533 Nov 27 15:19 boinc_task_state.xml
[2025-11-27 15:28:59] -rw------- 1 boincer umatlas 901276946 Nov 27 15:27 HITS.47556173._001779.pool.root.1
[2025-11-27 15:28:59] -rw------- 1 boincer umatlas      1064 Nov 27 15:27 memory_monitor_summary.json
[2025-11-27 15:28:59] -rw------- 1 boincer umatlas   1516240 Nov 27 15:27 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:28:59] -rw------- 1 boincer umatlas   2286821 Nov 27 15:27 log.47556173._001779.job.log.tgz.1
[2025-11-27 15:28:59] -rw------- 1 boincer umatlas      8660 Nov 27 15:27 heartbeat.json
[2025-11-27 15:28:59] -rw------- 1 boincer umatlas        95 Nov 27 15:28 pilot_heartbeat.json
[2025-11-27 15:28:59] -rw-r--r-- 1 boincer umatlas      5953 Nov 27 15:28 init_data.xml
[2025-11-27 15:28:59] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 15:28 boinc_mmap_file
[2025-11-27 15:28:59] -rw-r--r-- 1 boincer umatlas        29 Nov 27 15:28 wrapper_checkpoint.txt
[2025-11-27 15:28:59] -rw------- 1 boincer umatlas      5006 Nov 27 15:28 pilotlog.txt
[2025-11-27 15:28:59] -rw------- 1 boincer umatlas   9290674 Nov 27 15:28 log.47556173._001779.job.log.1
[2025-11-27 15:28:59] -rw------- 1 boincer umatlas       353 Nov 27 15:28 output.list
[2025-11-27 15:28:59] -rw-r--r-- 1 boincer umatlas       620 Nov 27 15:28 runtime_log
[2025-11-27 15:28:59] -rw------- 1 boincer umatlas  11601920 Nov 27 15:28 result.tar.gz
[2025-11-27 15:28:59] -rw-r--r-- 1 boincer umatlas      9338 Nov 27 15:28 runtime_log.err
[2025-11-27 15:28:59] -rw------- 1 boincer umatlas       666 Nov 27 15:28 RAPMDmRgXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHGNKDmSISKCn.diag
[2025-11-27 15:28:59] -rw-r--r-- 1 boincer umatlas     21253 Nov 27 15:28 stderr.txt
[2025-11-27 15:28:59] HITS file was successfully produced:
[2025-11-27 15:28:59] -rw------- 1 boincer umatlas 901276946 Nov 27 15:27 shared/HITS.pool.root.1
[2025-11-27 15:28:59]  *** Contents of shared directory: ***
[2025-11-27 15:28:59] total 1290388
[2025-11-27 15:28:59] -rw-r--r-- 2 boincer umatlas 407859050 Nov 26 20:48 ATLAS.root_0
[2025-11-27 15:28:59] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 20:48 start_atlas.sh
[2025-11-27 15:28:59] -rw-r--r-- 2 boincer umatlas    590105 Nov 26 20:48 input.tar.gz
[2025-11-27 15:28:59] -rw------- 1 boincer umatlas 901276946 Nov 27 15:27 HITS.pool.root.1
[2025-11-27 15:28:59] -rw------- 1 boincer umatlas  11601920 Nov 27 15:28 result.tar.gz
15:29:00 (1126): run_atlas exited; CPU time 525260.870989
15:29:00 (1126): called boinc_finish(0)

</stderr_txt>
]]>

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