Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:58:44 (223880): wrapper (7.7.26015): starting
21:58:44 (223880): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 21:58:44] Arguments: --nthreads 8
[2025-11-26 21:58:44] Threads: 8
[2025-11-26 21:58:44] Checking for CVMFS
[2025-11-26 21:58:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 21:58:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 21:58:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 21:58:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 21:58:45] 2.13.3.0 15397 30781 254684 153343 2 916 27298514 32935936 54750 16776704 0 317601983 99.619 305848017 35779 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 21:58:45] CVMFS is ok
[2025-11-26 21:58:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 21:58:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 21:58:45] Further information can be found at the LHC@home message board.
[2025-11-26 21:58:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 21:58:45] Checking for apptainer binary...
[2025-11-26 21:58:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 21:58:45] Running /usr/bin/apptainer --version
[2025-11-26 21:58:45] apptainer version 1.4.4-1.el9
[2025-11-26 21:58:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 21:58:45] c7-16-8.aglt2.org
[2025-11-26 21:58:45] apptainer works
[2025-11-26 21:58:45] Set ATHENA_PROC_NUMBER=8
[2025-11-26 21:58:45] Set ATHENA_CORE_NUMBER=8
[2025-11-26 21:58:45] Starting ATLAS job with PandaID=6897394695
[2025-11-26 21:58:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:02:30 (1067654): wrapper (7.7.26015): starting
00:02:30 (1067654): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:02:30] Arguments: --nthreads 9
[2025-11-27 00:02:30] Threads: 9
[2025-11-27 00:02:30] This job has been restarted, cleaning up previous attempt
[2025-11-27 00:02:30] Checking for CVMFS
[2025-11-27 00:02:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:02:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:02:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:02:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:02:31] 2.13.3.0 15397 30905 250732 153347 3 771 16550988 32935936 57581 16776704 0 319059190 99.619 307526723 35705 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:02:31] CVMFS is ok
[2025-11-27 00:02:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:02:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:02:31] Further information can be found at the LHC@home message board.
[2025-11-27 00:02:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:02:31] Checking for apptainer binary...
[2025-11-27 00:02:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:02:31] Running /usr/bin/apptainer --version
[2025-11-27 00:02:31] apptainer version 1.4.4-1.el9
[2025-11-27 00:02:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:02:31] c7-16-8.aglt2.org
[2025-11-27 00:02:31] apptainer works
[2025-11-27 00:02:31] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:02:31] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:02:31] Starting ATLAS job with PandaID=6897394695
[2025-11-27 00:02:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:12:30]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:12:30] 2025-11-27 23:59:24,852 | INFO     | time since job start (68191s) is within the limit (172800.0s)
[2025-11-27 19:12:30] 2025-11-27 23:59:26,005 | INFO     | monitor loop #3234: job 0:6897394695 is in state 'finished'
[2025-11-27 19:12:30] 2025-11-27 23:59:26,005 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:12:30] 2025-11-27 23:59:26,274 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 19:12:30] 2025-11-27 23:59:26,280 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3207.982093750001
[2025-11-27 19:12:30] 2025-11-27 23:59:26,342 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6897394695/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:12:30] 2025-11-27 23:59:26,343 | INFO     | extracted standard info from prmon json
[2025-11-27 19:12:30] 2025-11-27 23:59:26,343 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:12:30] 2025-11-27 23:59:26,343 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:12:30] 2025-11-27 23:59:26,365 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:12:30] 2025-11-27 23:59:26,368 | INFO     | sum of square deviations: 432153495904.7414
[2025-11-27 19:12:30] 2025-11-27 23:59:26,407 | INFO     | sum of deviations: 4012095514313.7236
[2025-11-27 19:12:30] 2025-11-27 23:59:26,408 | INFO     | mean x: 1764253870.9847806
[2025-11-27 19:12:30] 2025-11-27 23:59:26,408 | INFO     | mean y: 3097342.631154879
[2025-11-27 19:12:30] 2025-11-27 23:59:26,408 | INFO     | intersect: -16376163982.259127
[2025-11-27 19:12:30] 2025-11-27 23:59:26,409 | INFO     | chi2: 8.485395180898431
[2025-11-27 19:12:30] 2025-11-27 23:59:26,410 | INFO     | sum of square deviations: 426376457959.87067
[2025-11-27 19:12:30] 2025-11-27 23:59:26,441 | INFO     | sum of deviations: 4426762096469.944
[2025-11-27 19:12:30] 2025-11-27 23:59:26,441 | INFO     | mean x: 1764253718.4892087
[2025-11-27 19:12:30] 2025-11-27 23:59:26,441 | INFO     | mean y: 3108290.7041366906
[2025-11-27 19:12:30] 2025-11-27 23:59:26,442 | INFO     | intersect: -18313877424.063526
[2025-11-27 19:12:30] 2025-11-27 23:59:26,442 | INFO     | chi2: 5.152753590373399
[2025-11-27 19:12:30] 2025-11-27 23:59:26,443 | INFO     | current chi2=5.152753590373399 (change=39.27503103246363 %)
[2025-11-27 19:12:30] 2025-11-27 23:59:26,444 | INFO     | sum of square deviations: 420650938787.90985
[2025-11-27 19:12:30] 2025-11-27 23:59:26,494 | INFO     | sum of deviations: 4460061402057.088
[2025-11-27 19:12:30] 2025-11-27 23:59:26,494 | INFO     | mean x: 1764253565.9909666
[2025-11-27 19:12:30] 2025-11-27 23:59:26,494 | INFO     | mean y: 3109171.908762421
[2025-11-27 19:12:30] 2025-11-27 23:59:26,495 | INFO     | intersect: -18702849872.878338
[2025-11-27 19:12:30] 2025-11-27 23:59:26,496 | INFO     | chi2: 4.894084299146513
[2025-11-27 19:12:30] 2025-11-27 23:59:26,496 | INFO     | current chi2=4.894084299146513 (change=5.020020590740898 %)
[2025-11-27 19:12:30] 2025-11-27 23:59:26,496 | INFO     | right removable region: 1106
[2025-11-27 19:12:30] 2025-11-27 23:59:26,497 | INFO     | sum of square deviations: 426375786959.8705
[2025-11-27 19:12:30] 2025-11-27 23:59:26,524 | INFO     | sum of deviations: 3570341220933.0903
[2025-11-27 19:12:30] 2025-11-27 23:59:26,524 | INFO     | mean x: 1764254023.4892087
[2025-11-27 19:12:30] 2025-11-27 23:59:26,524 | INFO     | mean y: 3108999.6744604316
[2025-11-27 19:12:30] 2025-11-27 23:59:26,524 | INFO     | intersect: -14770217856.368198
[2025-11-27 19:12:30] 2025-11-27 23:59:26,525 | INFO     | chi2: 5.070916278392522
[2025-11-27 19:12:30] 2025-11-27 23:59:26,525 | INFO     | current chi2=5.070916278392522 (change=40.23948006796762 %)
[2025-11-27 19:12:30] 2025-11-27 23:59:26,526 | INFO     | sum of square deviations: 420650206662.8489
[2025-11-27 19:12:30] 2025-11-27 23:59:26,548 | INFO     | sum of deviations: 3399096977831.9844
[2025-11-27 19:12:30] 2025-11-27 23:59:26,549 | INFO     | mean x: 1764254175.9882565
[2025-11-27 19:12:30] 2025-11-27 23:59:26,549 | INFO     | mean y: 3113557.075880759
[2025-11-27 19:12:30] 2025-11-27 23:59:26,549 | INFO     | intersect: -14253080645.951416
[2025-11-27 19:12:30] 2025-11-27 23:59:26,550 | INFO     | chi2: 4.642121370990384
[2025-11-27 19:12:30] 2025-11-27 23:59:26,550 | INFO     | current chi2=4.642121370990384 (change=8.45596503395765 %)
[2025-11-27 19:12:30] 2025-11-27 23:59:26,550 | INFO     | left removable region: 20
[2025-11-27 19:12:30] 2025-11-27 23:59:26,551 | INFO     | sum of square deviations: 397162561115.45496
[2025-11-27 19:12:30] 2025-11-27 23:59:26,594 | INFO     | sum of deviations: 3604312244817.175
[2025-11-27 19:12:30] 2025-11-27 23:59:26,595 | INFO     | mean x: 1764254145.4935544
[2025-11-27 19:12:30] 2025-11-27 23:59:26,595 | INFO     | mean y: 3131974.811233886
[2025-11-27 19:12:30] 2025-11-27 23:59:26,595 | INFO     | intersect: -16007749820.573664
[2025-11-27 19:12:30] 2025-11-27 23:59:26,596 | INFO     | chi2: 0.8220257047375563
[2025-11-27 19:12:30] 2025-11-27 23:59:26,596 | INFO     | current memory leak: 9.08 B/s (using 1086 data points, chi2=0.82)
[2025-11-27 19:12:30] 2025-11-27 23:59:26,630 | INFO     | could have reported an average CPU frequency of 3163 MHz (41 samples)
[2025-11-27 19:12:30] 2025-11-27 23:59:26,632 | INFO     | ..............................
[2025-11-27 19:12:30] 2025-11-27 23:59:26,632 | INFO     | . Timing measurements:
[2025-11-27 19:12:30] 2025-11-27 23:59:26,632 | INFO     | . get job = 0 s
[2025-11-27 19:12:30] 2025-11-27 23:59:26,632 | INFO     | . initial setup = 2 s
[2025-11-27 19:12:30] 2025-11-27 23:59:26,633 | INFO     | . payload setup = 14 s
[2025-11-27 19:12:30] 2025-11-27 23:59:26,633 | INFO     | . stage-in = 0 s
[2025-11-27 19:12:30] 2025-11-27 23:59:26,633 | INFO     | . payload execution = 68124 s
[2025-11-27 19:12:30] 2025-11-27 23:59:26,633 | INFO     | . stage-out = 4 s
[2025-11-27 19:12:30] 2025-11-27 23:59:26,633 | INFO     | . log creation = 0 s
[2025-11-27 19:12:30] 2025-11-27 23:59:26,633 | INFO     | ..............................
[2025-11-27 19:12:30] 2025-11-27 23:59:26,734 | INFO     | 
[2025-11-27 19:12:30] 2025-11-27 23:59:26,734 | INFO     | job summary report
[2025-11-27 19:12:30] 2025-11-27 23:59:26,734 | INFO     | --------------------------------------------------
[2025-11-27 19:12:30] 2025-11-27 23:59:26,734 | INFO     | PanDA job id: 6897394695
[2025-11-27 19:12:30] 2025-11-27 23:59:26,734 | INFO     | task id: 47556161
[2025-11-27 19:12:30] 2025-11-27 23:59:26,735 | INFO     | errors: (none)
[2025-11-27 19:12:30] 2025-11-27 23:59:26,735 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:12:30] 2025-11-27 23:59:26,735 | INFO     | pilot state: finished 
[2025-11-27 19:12:30] 2025-11-27 23:59:26,735 | INFO     | transexitcode: 0
[2025-11-27 19:12:30] 2025-11-27 23:59:26,735 | INFO     | exeerrorcode: 0
[2025-11-27 19:12:30] 2025-11-27 23:59:26,735 | INFO     | exeerrordiag: 
[2025-11-27 19:12:30] 2025-11-27 23:59:26,735 | INFO     | exitcode: 0
[2025-11-27 19:12:30] 2025-11-27 23:59:26,735 | INFO     | exitmsg: OK
[2025-11-27 19:12:30] 2025-11-27 23:59:26,735 | INFO     | cpuconsumptiontime: 200329 s
[2025-11-27 19:12:30] 2025-11-27 23:59:26,735 | INFO     | nevents: 1000
[2025-11-27 19:12:30] 2025-11-27 23:59:26,735 | INFO     | neventsw: 0
[2025-11-27 19:12:30] 2025-11-27 23:59:26,735 | INFO     | pid: 1098140
[2025-11-27 19:12:30] 2025-11-27 23:59:26,735 | INFO     | pgrp: 1098140
[2025-11-27 19:12:30] 2025-11-27 23:59:26,736 | INFO     | corecount: 9
[2025-11-27 19:12:30] 2025-11-27 23:59:26,736 | INFO     | event service: False
[2025-11-27 19:12:30] 2025-11-27 23:59:26,736 | INFO     | sizes: {0: 2284265, 11: 2284265, 12: 2284555, 22: 2284583, 68143: 2339870, 68148: 2348864, 68151: 2349048, 68160: 2349390}
[2025-11-27 19:12:30] 2025-11-27 23:59:26,736 | INFO     | --------------------------------------------------
[2025-11-27 19:12:30] 2025-11-27 23:59:26,736 | INFO     | 
[2025-11-27 19:12:30] 2025-11-27 23:59:26,736 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 19:12:30] 2025-11-27 23:59:26,771 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,771 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,772 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,772 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,772 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,772 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,772 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,772 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,772 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,772 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,772 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,772 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,772 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,772 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,772 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,772 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,773 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,773 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:12:30] 2025-11-27 23:59:26,773 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,773 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:12:30] 2025-11-27 23:59:26,773 | INFO     | job 6897394695 has completed (purged errors)
[2025-11-27 19:12:30] 2025-11-27 23:59:26,773 | INFO     | overall cleanup function is called
[2025-11-27 19:12:30] 2025-11-27 23:59:27,793 | INFO     | --- collectZombieJob: --- 10, [1098140]
[2025-11-27 19:12:30] 2025-11-27 23:59:27,794 | INFO     | zombie collector waiting for pid 1098140
[2025-11-27 19:12:30] 2025-11-27 23:59:27,794 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:12:30] 2025-11-27 23:59:27,794 | INFO     | collected zombie processes
[2025-11-27 19:12:30] 2025-11-27 23:59:27,794 | INFO     | will attempt to kill all subprocesses of pid=1098140
[2025-11-27 19:12:30] 2025-11-27 23:59:28,882 | INFO     | process IDs to be killed: [1098140] (in reverse order)
[2025-11-27 19:12:30] 2025-11-27 23:59:29,102 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:12:30] 2025-11-27 23:59:29,104 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:12:30] 2025-11-27 23:59:29,139 | INFO     | did not find any defunct processes belonging to 1098140
[2025-11-27 19:12:30] 2025-11-27 23:59:29,210 | INFO     | did not find any defunct processes belonging to 1098140
[2025-11-27 19:12:30] 2025-11-27 23:59:29,215 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:12:30] 2025-11-27 23:59:29,215 | INFO     | ready for new job
[2025-11-27 19:12:30] 2025-11-27 23:59:29,215 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:12:30] 2025-11-27 23:59:29,222 | INFO     | ***************************************
[2025-11-27 19:12:30] 2025-11-27 23:59:29,226 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:12:30] 2025-11-27 23:59:29,226 | INFO     | ***************************************
[2025-11-27 19:12:30] 2025-11-27 23:59:29,226 | INFO     | 
[2025-11-27 19:12:30] 2025-11-27 23:59:29,235 | INFO     | architecture information:
[2025-11-27 19:12:30] 2025-11-27 23:59:29,243 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:12:30] 2025-11-27 23:59:29,307 | INFO     | cat /etc/os-release:
[2025-11-27 19:12:30] NAME="CentOS Linux"
[2025-11-27 19:12:30] VERSION="7 (Core)"
[2025-11-27 19:12:30] ID="centos"
[2025-11-27 19:12:30] ID_LIKE="rhel fedora"
[2025-11-27 19:12:30] VERSION_ID="7"
[2025-11-27 19:12:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:12:30] ANSI_COLOR="0;31"
[2025-11-27 19:12:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:12:30] HOME_URL="https://www.centos.org/"
[2025-11-27 19:12:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:12:30] 
[2025-11-27 19:12:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:12:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:12:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:12:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:12:30] 
[2025-11-27 19:12:30] 2025-11-27 23:59:29,308 | INFO     | ***************************************
[2025-11-27 19:12:30] 2025-11-27 23:59:29,812 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 19:12:30] 2025-11-27 23:59:29,829 | INFO     | sufficient remaining disk space (65799192576 B)
[2025-11-27 19:12:30] 2025-11-27 23:59:29,829 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:12:30] 2025-11-27 23:59:29,829 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:12:30] 2025-11-27 23:59:29,829 | INFO     | update_server=False
[2025-11-27 19:12:30] 2025-11-27 23:59:29,829 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:12:30] 2025-11-27 23:59:29,829 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:12:30] 2025-11-27 23:59:29,829 | INFO     | aborting loop
[2025-11-27 19:12:30] 2025-11-27 23:59:30,120 | INFO     | all payload control threads have been joined
[2025-11-27 19:12:30] 2025-11-27 23:59:30,320 | INFO     | all data control threads have been joined
[2025-11-27 19:12:30] 2025-11-27 23:59:30,837 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:12:30] 2025-11-27 23:59:30,838 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:12:30] 2025-11-27 23:59:30,892 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:12:30] 2025-11-27 23:59:30,947 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:12:30] 2025-11-27 23:59:31,004 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:12:30] 2025-11-27 23:59:31,016 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:12:30] 2025-11-27 23:59:31,127 | INFO     | [payload] control thread has finished
[2025-11-27 19:12:30] 2025-11-27 23:59:31,158 | INFO     | [job] validate thread has finished
[2025-11-27 19:12:30] 2025-11-27 23:59:31,280 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:12:30] 2025-11-27 23:59:31,327 | INFO     | [data] control thread has finished
[2025-11-27 19:12:30] 2025-11-27 23:59:31,528 | INFO     | all job control threads have been joined
[2025-11-27 19:12:30] 2025-11-27 23:59:31,750 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:12:30] 2025-11-27 23:59:32,253 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:12:30] 2025-11-27 23:59:32,271 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:12:30] 2025-11-27 23:59:32,300 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:12:30] 2025-11-27 23:59:32,535 | INFO     | [job] control thread has finished
[2025-11-27 19:12:30] 2025-11-27 23:59:32,755 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:12:30] 2025-11-27 23:59:32,899 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:12:30] 2025-11-27 23:59:33,280 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:12:30] 2025-11-27 23:59:37,288 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:12:30] 2025-11-27 23:59:58,938 | INFO     | PID=1072737 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:12:30] 2025-11-27 23:59:58,938 | INFO     | .. there are 80 such processes running
[2025-11-27 19:12:30] 2025-11-27 23:59:58,939 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:12:30] 2025-11-27 23:59:58,939 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:12:30] 2025-11-27 23:59:58,939 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:12:30] 2025-11-27 23:59:59,775 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:12:30] 2025-11-28 00:00:01,025 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139778050746176)>', '<ExcThread(monitor, started 139777789634304)>']
[2025-11-27 19:12:30] 2025-11-28 00:00:01,954 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:12:30] 2025-11-28 00:00:01,954 | INFO     | [monitor] control thread has ended
[2025-11-27 19:12:30] 2025-11-28 00:00:06,068 | INFO     | all workflow threads have been joined
[2025-11-27 19:12:30] 2025-11-28 00:00:06,068 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:12:30] 2025-11-28 00:00:06,069 | INFO     | traces error code: 0
[2025-11-27 19:12:30] 2025-11-28 00:00:06,069 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:12:30] 2025-11-28 00:00:06,651 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:12:30] 2025-11-28 00:00:06,655 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:12:30] 2025-11-28 00:00:06,660 [wrapper] pilotpid: 1072737
[2025-11-27 19:12:30] 2025-11-28 00:00:06,667 [wrapper] Pilot exit status: 0
[2025-11-27 19:12:30] 2025-11-28 00:00:06,699 [wrapper] pandaids: 6897394695 6897394695
[2025-11-27 19:12:30] 2025-11-28 00:00:06,885 [wrapper] cleanup supervisor_pilot 4169024 1072738
[2025-11-27 19:12:30] 2025-11-28 00:00:06,891 [wrapper] Test setup, not cleaning
[2025-11-27 19:12:30] 2025-11-28 00:00:06,897 [wrapper] apfmon messages muted
[2025-11-27 19:12:30] 2025-11-28 00:00:06,904 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:12:30] 2025-11-28 00:00:06,909 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:12:30]  *** Error codes and diagnostics ***
[2025-11-27 19:12:30]     "exeErrorCode": 0,
[2025-11-27 19:12:30]     "exeErrorDiag": "",
[2025-11-27 19:12:30]     "pilotErrorCode": 0,
[2025-11-27 19:12:30]     "pilotErrorDiag": "",
[2025-11-27 19:12:30]  *** Listing of results directory ***
[2025-11-27 19:12:30] total 1715248
[2025-11-27 19:12:30] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 19:12:30] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 19:12:30] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 19:12:30] -rwx------. 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-27 19:12:30] -rw-r--r--. 1 boincer umatlas       100 Nov 26 21:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:12:30] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 21:58 run_atlas
[2025-11-27 19:12:30] -rw-r--r--. 1 boincer umatlas       105 Nov 26 21:58 job.xml
[2025-11-27 19:12:30] -rw-r--r--. 3 boincer umatlas 410400362 Nov 26 21:58 EVNT.47483658._002232.pool.root.1
[2025-11-27 19:12:30] -rw-r--r--. 3 boincer umatlas 410400362 Nov 26 21:58 ATLAS.root_0
[2025-11-27 19:12:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 21:58 start_atlas.sh
[2025-11-27 19:12:30] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 21:58 shared
[2025-11-27 19:12:30] -rw-r--r--. 2 boincer umatlas    590111 Nov 26 21:58 input.tar.gz
[2025-11-27 19:12:30] -rw-r--r--. 1 boincer umatlas         0 Nov 26 21:58 boinc_lockfile
[2025-11-27 19:12:30] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 00:02 pandaJob.out
[2025-11-27 19:12:30] -rw-------. 1 boincer umatlas        57 Nov 27 00:02 setup.sh.local
[2025-11-27 19:12:30] -rw-------. 1 boincer umatlas    991570 Nov 27 00:02 agis_schedconf.cvmfs.json
[2025-11-27 19:12:30] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:51 boinc_task_state.xml
[2025-11-27 19:12:30] -rw-------. 1 boincer umatlas 912204756 Nov 27 18:58 HITS.47556161._002154.pool.root.1
[2025-11-27 19:12:30] -rw-------. 1 boincer umatlas      1070 Nov 27 18:59 memory_monitor_summary.json
[2025-11-27 19:12:30] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:59 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:12:30] -rw-------. 1 boincer umatlas   2253278 Nov 27 18:59 log.47556161._002154.job.log.tgz.1
[2025-11-27 19:12:30] -rw-------. 1 boincer umatlas      8628 Nov 27 18:59 heartbeat.json
[2025-11-27 19:12:30] -rw-------. 1 boincer umatlas        97 Nov 27 18:59 pilot_heartbeat.json
[2025-11-27 19:12:30] -rw-------. 1 boincer umatlas      4824 Nov 27 19:00 pilotlog.txt
[2025-11-27 19:12:30] -rw-------. 1 boincer umatlas   7480992 Nov 27 19:00 log.47556161._002154.job.log.1
[2025-11-27 19:12:30] -rw-------. 1 boincer umatlas       353 Nov 27 19:00 output.list
[2025-11-27 19:12:30] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:00 runtime_log
[2025-11-27 19:12:30] -rw-------. 1 boincer umatlas   9758720 Nov 27 19:00 result.tar.gz
[2025-11-27 19:12:30] -rw-r--r--. 1 boincer umatlas      9423 Nov 27 19:00 runtime_log.err
[2025-11-27 19:12:30] -rw-------. 1 boincer umatlas       790 Nov 27 19:00 OnwMDmDXBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjVMKDmZWEKPo.diag
[2025-11-27 19:12:30] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 19:10 init_data.xml
[2025-11-27 19:12:30] -rw-r--r--. 1 boincer umatlas        29 Nov 27 19:12 wrapper_checkpoint.txt
[2025-11-27 19:12:30] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:12 boinc_mmap_file
[2025-11-27 19:12:30] -rw-r--r--. 1 boincer umatlas     23508 Nov 27 19:12 stderr.txt
[2025-11-27 19:12:30] HITS file was successfully produced:
[2025-11-27 19:12:30] -rw-------. 1 boincer umatlas 912204756 Nov 27 18:58 shared/HITS.pool.root.1
[2025-11-27 19:12:30]  *** Contents of shared directory: ***
[2025-11-27 19:12:30] total 1301748
[2025-11-27 19:12:30] -rw-r--r--. 3 boincer umatlas 410400362 Nov 26 21:58 ATLAS.root_0
[2025-11-27 19:12:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 21:58 start_atlas.sh
[2025-11-27 19:12:30] -rw-r--r--. 2 boincer umatlas    590111 Nov 26 21:58 input.tar.gz
[2025-11-27 19:12:30] -rw-------. 1 boincer umatlas 912204756 Nov 27 18:58 HITS.pool.root.1
[2025-11-27 19:12:30] -rw-------. 1 boincer umatlas   9758720 Nov 27 19:00 result.tar.gz
19:12:31 (1067654): run_atlas exited; CPU time 201871.115888
19:12:31 (1067654): called boinc_finish(0)

</stderr_txt>
]]>

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