Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:05:34 (4090945): wrapper (7.7.26015): starting
21:05:34 (4090945): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 21:05:34] Arguments: --nthreads 8
[2025-11-26 21:05:34] Threads: 8
[2025-11-26 21:05:34] Checking for CVMFS
[2025-11-26 21:05:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 21:05:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 21:05:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 21:05:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 21:05:35] 2.13.2.0 9514 36545 461616 153342 0 385 36740773 40960000 21215 16776704 0 100301614 99.577 105261717 35545 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 21:05:35] CVMFS is ok
[2025-11-26 21:05:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 21:05:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 21:05:35] Further information can be found at the LHC@home message board.
[2025-11-26 21:05:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 21:05:35] Checking for apptainer binary...
[2025-11-26 21:05:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 21:05:35] Running /usr/bin/apptainer --version
[2025-11-26 21:05:35] apptainer version 1.4.4-1.el9
[2025-11-26 21:05:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 21:05:36] c-211-33-3.aglt2.org
[2025-11-26 21:05:36] apptainer works
[2025-11-26 21:05:36] Set ATHENA_PROC_NUMBER=8
[2025-11-26 21:05:36] Set ATHENA_CORE_NUMBER=8
[2025-11-26 21:05:36] Starting ATLAS job with PandaID=6897372724
[2025-11-26 21:05:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 05:29:50]  *** The last 200 lines of the pilot log: ***
[2025-11-28 05:29:50] 2025-11-28 10:28:39,805 | INFO     | monitor loop #6461: job 0:6897372724 is in state 'finished'
[2025-11-28 05:29:50] 2025-11-28 10:28:39,806 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:29:50] 2025-11-28 10:28:40,613 | INFO     | time since job start (116550s) is within the limit (172800.0s)
[2025-11-28 05:29:50] 2025-11-28 10:28:42,320 | INFO     | monitor loop #6462: job 0:6897372724 is in state 'finished'
[2025-11-28 05:29:50] 2025-11-28 10:28:42,321 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:29:50] 2025-11-28 10:28:42,619 | INFO     | time since job start (116552s) is within the limit (172800.0s)
[2025-11-28 05:29:50] 2025-11-28 10:28:44,679 | INFO     | PID=4095038 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 05:29:50] 2025-11-28 10:28:44,679 | INFO     | .. there are 24 such processes running
[2025-11-28 05:29:50] 2025-11-28 10:28:44,826 | INFO     | monitor loop #6463: job 0:6897372724 is in state 'finished'
[2025-11-28 05:29:50] 2025-11-28 10:28:44,827 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:29:50] 2025-11-28 10:28:45,679 | INFO     | time since job start (116555s) is within the limit (172800.0s)
[2025-11-28 05:29:50] 2025-11-28 10:28:47,347 | INFO     | monitor loop #6464: job 0:6897372724 is in state 'finished'
[2025-11-28 05:29:50] 2025-11-28 10:28:47,348 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:29:50] 2025-11-28 10:28:47,687 | INFO     | time since job start (116557s) is within the limit (172800.0s)
[2025-11-28 05:29:50] 2025-11-28 10:28:49,693 | INFO     | time since job start (116559s) is within the limit (172800.0s)
[2025-11-28 05:29:50] 2025-11-28 10:28:49,852 | INFO     | monitor loop #6465: job 0:6897372724 is in state 'finished'
[2025-11-28 05:29:50] 2025-11-28 10:28:49,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:29:50] 2025-11-28 10:28:50,001 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 05:29:50] 2025-11-28 10:28:50,016 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2601.505177083334
[2025-11-28 05:29:50] 2025-11-28 10:28:50,035 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897372724/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 05:29:50] 2025-11-28 10:28:50,036 | INFO     | extracted standard info from prmon json
[2025-11-28 05:29:50] 2025-11-28 10:28:50,036 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 05:29:50] 2025-11-28 10:28:50,036 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 05:29:50] 2025-11-28 10:28:50,071 | INFO     | fitting pss+swap vs Time
[2025-11-28 05:29:50] 2025-11-28 10:28:50,074 | INFO     | sum of square deviations: 2160507748980.0657
[2025-11-28 05:29:50] 2025-11-28 10:28:50,149 | INFO     | sum of deviations: 6833699696713.5
[2025-11-28 05:29:50] 2025-11-28 10:28:50,149 | INFO     | mean x: 1764267455.3424084
[2025-11-28 05:29:50] 2025-11-28 10:28:50,149 | INFO     | mean y: 2907303.895287958
[2025-11-28 05:29:50] 2025-11-28 10:28:50,150 | INFO     | intersect: -5577481833.883342
[2025-11-28 05:29:50] 2025-11-28 10:28:50,152 | INFO     | chi2: 16.350620578695988
[2025-11-28 05:29:50] 2025-11-28 10:28:50,155 | INFO     | sum of square deviations: 2143586726910.0144
[2025-11-28 05:29:50] 2025-11-28 10:28:50,251 | INFO     | sum of deviations: 7496971909412.2705
[2025-11-28 05:29:50] 2025-11-28 10:28:50,251 | INFO     | mean x: 1764267302.855118
[2025-11-28 05:29:50] 2025-11-28 10:28:50,251 | INFO     | mean y: 2913280.0335958004
[2025-11-28 05:29:50] 2025-11-28 10:28:50,252 | INFO     | intersect: -6167428346.062231
[2025-11-28 05:29:50] 2025-11-28 10:28:50,254 | INFO     | chi2: 12.931197518069729
[2025-11-28 05:29:50] 2025-11-28 10:28:50,254 | INFO     | current chi2=12.931197518069729 (change=20.913108735955813 %)
[2025-11-28 05:29:50] 2025-11-28 10:28:50,254 | INFO     | right removable region: 1904
[2025-11-28 05:29:50] 2025-11-28 10:28:50,257 | INFO     | sum of square deviations: 2143581085020.0073
[2025-11-28 05:29:50] 2025-11-28 10:28:50,335 | INFO     | sum of deviations: 6225346886107.91
[2025-11-28 05:29:50] 2025-11-28 10:28:50,336 | INFO     | mean x: 1764267607.855118
[2025-11-28 05:29:50] 2025-11-28 10:28:50,336 | INFO     | mean y: 2912783.271391076
[2025-11-28 05:29:50] 2025-11-28 10:28:50,336 | INFO     | intersect: -5120839210.798569
[2025-11-28 05:29:50] 2025-11-28 10:28:50,338 | INFO     | chi2: 13.787376804511023
[2025-11-28 05:29:50] 2025-11-28 10:28:50,338 | INFO     | current chi2=13.787376804511023 (change=15.676736927800397 %)
[2025-11-28 05:29:50] 2025-11-28 10:28:50,339 | INFO     | left removable region: 10
[2025-11-28 05:29:50] 2025-11-28 10:28:50,341 | INFO     | sum of square deviations: 2106661456308.295
[2025-11-28 05:29:50] 2025-11-28 10:28:50,413 | INFO     | sum of deviations: 6834133539452.774
[2025-11-28 05:29:50] 2025-11-28 10:28:50,413 | INFO     | mean x: 1764267577.380148
[2025-11-28 05:29:50] 2025-11-28 10:28:50,413 | INFO     | mean y: 2921424.7544878563
[2025-11-28 05:29:50] 2025-11-28 10:28:50,414 | INFO     | intersect: -5720466254.380166
[2025-11-28 05:29:50] 2025-11-28 10:28:50,416 | INFO     | chi2: 9.71909326140874
[2025-11-28 05:29:50] 2025-11-28 10:28:50,416 | INFO     | current memory leak: 3.24 B/s (using 1894 data points, chi2=9.72)
[2025-11-28 05:29:50] 2025-11-28 10:28:50,418 | INFO     | could have reported an average CPU frequency of 2604 MHz (67 samples)
[2025-11-28 05:29:50] 2025-11-28 10:28:50,418 | INFO     | ..............................
[2025-11-28 05:29:50] 2025-11-28 10:28:50,418 | INFO     | . Timing measurements:
[2025-11-28 05:29:50] 2025-11-28 10:28:50,419 | INFO     | . get job = 0 s
[2025-11-28 05:29:50] 2025-11-28 10:28:50,419 | INFO     | . initial setup = 3 s
[2025-11-28 05:29:50] 2025-11-28 10:28:50,419 | INFO     | . payload setup = 12 s
[2025-11-28 05:29:50] 2025-11-28 10:28:50,419 | INFO     | . stage-in = 0 s
[2025-11-28 05:29:50] 2025-11-28 10:28:50,419 | INFO     | . payload execution = 116470 s
[2025-11-28 05:29:50] 2025-11-28 10:28:50,419 | INFO     | . stage-out = 10 s
[2025-11-28 05:29:50] 2025-11-28 10:28:50,419 | INFO     | . log creation = 3 s
[2025-11-28 05:29:50] 2025-11-28 10:28:50,419 | INFO     | ..............................
[2025-11-28 05:29:50] 2025-11-28 10:28:50,880 | INFO     | 
[2025-11-28 05:29:50] 2025-11-28 10:28:50,881 | INFO     | job summary report
[2025-11-28 05:29:50] 2025-11-28 10:28:50,881 | INFO     | --------------------------------------------------
[2025-11-28 05:29:50] 2025-11-28 10:28:50,881 | INFO     | PanDA job id: 6897372724
[2025-11-28 05:29:50] 2025-11-28 10:28:50,881 | INFO     | task id: 47556161
[2025-11-28 05:29:50] 2025-11-28 10:28:50,881 | INFO     | errors: (none)
[2025-11-28 05:29:50] 2025-11-28 10:28:50,881 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 05:29:50] 2025-11-28 10:28:50,881 | INFO     | pilot state: finished 
[2025-11-28 05:29:50] 2025-11-28 10:28:50,881 | INFO     | transexitcode: 0
[2025-11-28 05:29:50] 2025-11-28 10:28:50,881 | INFO     | exeerrorcode: 0
[2025-11-28 05:29:50] 2025-11-28 10:28:50,881 | INFO     | exeerrordiag: 
[2025-11-28 05:29:50] 2025-11-28 10:28:50,881 | INFO     | exitcode: 0
[2025-11-28 05:29:50] 2025-11-28 10:28:50,882 | INFO     | exitmsg: OK
[2025-11-28 05:29:50] 2025-11-28 10:28:50,882 | INFO     | cpuconsumptiontime: 266085 s
[2025-11-28 05:29:50] 2025-11-28 10:28:50,882 | INFO     | nevents: 1000
[2025-11-28 05:29:50] 2025-11-28 10:28:50,882 | INFO     | neventsw: 0
[2025-11-28 05:29:50] 2025-11-28 10:28:50,882 | INFO     | pid: 4107553
[2025-11-28 05:29:50] 2025-11-28 10:28:50,882 | INFO     | pgrp: 4107553
[2025-11-28 05:29:50] 2025-11-28 10:28:50,882 | INFO     | corecount: 8
[2025-11-28 05:29:50] 2025-11-28 10:28:50,882 | INFO     | event service: False
[2025-11-28 05:29:50] 2025-11-28 10:28:50,882 | INFO     | sizes: {0: 2284094, 1: 2284293, 2: 2284293, 12: 2284321, 17: 2284611, 23: 2284639, 116483: 2361795, 116494: 2370789, 116495: 2370845, 116524: 2371091}
[2025-11-28 05:29:50] 2025-11-28 10:28:50,882 | INFO     | --------------------------------------------------
[2025-11-28 05:29:50] 2025-11-28 10:28:50,882 | INFO     | 
[2025-11-28 05:29:50] 2025-11-28 10:28:50,882 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-28 05:29:50] 2025-11-28 10:28:50,951 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,951 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,951 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,951 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,951 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,952 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,952 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,952 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,952 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,952 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,952 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,952 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,952 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,952 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,952 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,952 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,952 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,953 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 05:29:50] 2025-11-28 10:28:50,953 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,953 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 05:29:50] 2025-11-28 10:28:50,953 | INFO     | job 6897372724 has completed (purged errors)
[2025-11-28 05:29:50] 2025-11-28 10:28:50,953 | INFO     | overall cleanup function is called
[2025-11-28 05:29:50] 2025-11-28 10:28:52,013 | INFO     | --- collectZombieJob: --- 10, [4107553]
[2025-11-28 05:29:50] 2025-11-28 10:28:52,014 | INFO     | zombie collector waiting for pid 4107553
[2025-11-28 05:29:50] 2025-11-28 10:28:52,014 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 05:29:50] 2025-11-28 10:28:52,014 | INFO     | collected zombie processes
[2025-11-28 05:29:50] 2025-11-28 10:28:52,014 | INFO     | will attempt to kill all subprocesses of pid=4107553
[2025-11-28 05:29:50] 2025-11-28 10:28:52,955 | INFO     | process IDs to be killed: [4107553] (in reverse order)
[2025-11-28 05:29:50] 2025-11-28 10:28:53,443 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 05:29:50] 2025-11-28 10:28:53,444 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 05:29:50] 2025-11-28 10:28:53,478 | INFO     | did not find any defunct processes belonging to 4107553
[2025-11-28 05:29:50] 2025-11-28 10:28:53,515 | INFO     | did not find any defunct processes belonging to 4107553
[2025-11-28 05:29:50] 2025-11-28 10:28:53,516 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 05:29:50] 2025-11-28 10:28:53,517 | INFO     | ready for new job
[2025-11-28 05:29:50] 2025-11-28 10:28:53,518 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 05:29:50] 2025-11-28 10:28:53,538 | INFO     | ***************************************
[2025-11-28 05:29:50] 2025-11-28 10:28:53,542 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 05:29:50] 2025-11-28 10:28:53,543 | INFO     | ***************************************
[2025-11-28 05:29:50] 2025-11-28 10:28:53,543 | INFO     | 
[2025-11-28 05:29:50] 2025-11-28 10:28:53,557 | INFO     | architecture information:
[2025-11-28 05:29:50] 2025-11-28 10:28:53,559 | INFO     | executing command: cat /etc/os-release
[2025-11-28 05:29:50] 2025-11-28 10:28:53,640 | INFO     | cat /etc/os-release:
[2025-11-28 05:29:50] NAME="CentOS Linux"
[2025-11-28 05:29:50] VERSION="7 (Core)"
[2025-11-28 05:29:50] ID="centos"
[2025-11-28 05:29:50] ID_LIKE="rhel fedora"
[2025-11-28 05:29:50] VERSION_ID="7"
[2025-11-28 05:29:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 05:29:50] ANSI_COLOR="0;31"
[2025-11-28 05:29:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 05:29:50] HOME_URL="https://www.centos.org/"
[2025-11-28 05:29:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 05:29:50] 
[2025-11-28 05:29:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 05:29:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 05:29:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 05:29:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 05:29:50] 
[2025-11-28 05:29:50] 2025-11-28 10:28:53,640 | INFO     | ***************************************
[2025-11-28 05:29:50] 2025-11-28 10:28:54,144 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-28 05:29:50] 2025-11-28 10:28:54,269 | INFO     | sufficient remaining disk space (123467726848 B)
[2025-11-28 05:29:50] 2025-11-28 10:28:54,269 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 05:29:50] 2025-11-28 10:28:54,269 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 05:29:50] 2025-11-28 10:28:54,269 | INFO     | update_server=False
[2025-11-28 05:29:50] 2025-11-28 10:28:54,270 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 05:29:50] 2025-11-28 10:28:54,270 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 05:29:50] 2025-11-28 10:28:54,271 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:29:50] 2025-11-28 10:28:54,271 | INFO     | aborting loop
[2025-11-28 05:29:50] 2025-11-28 10:28:54,274 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 05:29:50] 2025-11-28 10:28:54,351 | INFO     | all payload control threads have been joined
[2025-11-28 05:29:50] 2025-11-28 10:28:54,674 | INFO     | all data control threads have been joined
[2025-11-28 05:29:50] 2025-11-28 10:28:55,276 | INFO     | [job] job monitor thread has finished
[2025-11-28 05:29:50] 2025-11-28 10:28:55,276 | INFO     | [job] retrieve thread has finished
[2025-11-28 05:29:50] 2025-11-28 10:28:55,300 | INFO     | [payload] validate_post thread has finished
[2025-11-28 05:29:50] 2025-11-28 10:28:55,340 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 05:29:50] 2025-11-28 10:28:55,344 | INFO     | [data] copytool_in thread has finished
[2025-11-28 05:29:50] 2025-11-28 10:28:55,360 | INFO     | [payload] control thread has finished
[2025-11-28 05:29:50] 2025-11-28 10:28:55,429 | INFO     | all job control threads have been joined
[2025-11-28 05:29:50] 2025-11-28 10:28:55,540 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:29:50] 2025-11-28 10:28:55,681 | INFO     | [data] control thread has finished
[2025-11-28 05:29:50] 2025-11-28 10:28:56,132 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 05:29:50] 2025-11-28 10:28:56,277 | INFO     | [data] copytool_out thread has finished
[2025-11-28 05:29:50] 2025-11-28 10:28:56,435 | INFO     | [job] control thread has finished
[2025-11-28 05:29:50] 2025-11-28 10:28:56,484 | INFO     | [job] validate thread has finished
[2025-11-28 05:29:50] 2025-11-28 10:28:56,546 | INFO     | [job] queue monitor thread has finished
[2025-11-28 05:29:50] 2025-11-28 10:28:56,740 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 05:29:50] 2025-11-28 10:28:56,741 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 05:29:50] 2025-11-28 10:28:56,859 | INFO     | [payload] failed_post thread has finished
[2025-11-28 05:29:50] 2025-11-28 10:28:58,287 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 05:29:50] 2025-11-28 10:29:23,842 | INFO     | PID=4095038 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 05:29:50] 2025-11-28 10:29:23,843 | INFO     | .. there are 25 such processes running
[2025-11-28 05:29:50] 2025-11-28 10:29:23,843 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 05:29:50] 2025-11-28 10:29:23,843 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 05:29:50] 2025-11-28 10:29:23,843 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 05:29:50] 2025-11-28 10:29:42,744 | INFO     | [monitor] cgroup control has ended
[2025-11-28 05:29:50] 2025-11-28 10:29:43,715 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140574385805120)>', '<ExcThread(monitor, started 140574027912960)>']
[2025-11-28 05:29:50] 2025-11-28 10:29:43,976 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 05:29:50] 2025-11-28 10:29:43,977 | INFO     | [monitor] control thread has ended
[2025-11-28 05:29:50] 2025-11-28 10:29:48,741 | INFO     | all workflow threads have been joined
[2025-11-28 05:29:50] 2025-11-28 10:29:48,742 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 05:29:50] 2025-11-28 10:29:48,742 | INFO     | traces error code: 0
[2025-11-28 05:29:50] 2025-11-28 10:29:48,742 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 05:29:50] 2025-11-28 10:29:49,193 [wrapper] ==== pilot stdout END ====
[2025-11-28 05:29:50] 2025-11-28 10:29:49,201 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 05:29:50] 2025-11-28 10:29:49,209 [wrapper] pilotpid: 4095038
[2025-11-28 05:29:50] 2025-11-28 10:29:49,212 [wrapper] Pilot exit status: 0
[2025-11-28 05:29:50] 2025-11-28 10:29:49,330 [wrapper] pandaids: 6897372724
[2025-11-28 05:29:50] 2025-11-28 10:29:49,519 [wrapper] cleanup supervisor_pilot 1293019 4095039
[2025-11-28 05:29:50] 2025-11-28 10:29:49,541 [wrapper] Test setup, not cleaning
[2025-11-28 05:29:50] 2025-11-28 10:29:49,564 [wrapper] apfmon messages muted
[2025-11-28 05:29:50] 2025-11-28 10:29:49,583 [wrapper] ==== wrapper stdout END ====
[2025-11-28 05:29:50] 2025-11-28 10:29:49,608 [wrapper] ==== wrapper stderr END ====
[2025-11-28 05:29:50]  *** Error codes and diagnostics ***
[2025-11-28 05:29:50]     "exeErrorCode": 0,
[2025-11-28 05:29:50]     "exeErrorDiag": "",
[2025-11-28 05:29:50]     "pilotErrorCode": 0,
[2025-11-28 05:29:50]     "pilotErrorDiag": "",
[2025-11-28 05:29:50]  *** Listing of results directory ***
[2025-11-28 05:29:50] total 1327268
[2025-11-28 05:29:50] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-28 05:29:50] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-28 05:29:50] -rwx------. 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-28 05:29:50] -rw-r--r--. 1 boincer umatlas       100 Nov 26 21:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 05:29:50] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 21:05 run_atlas
[2025-11-28 05:29:50] -rw-r--r--. 1 boincer umatlas       105 Nov 26 21:05 job.xml
[2025-11-28 05:29:50] -rw-r--r--. 2 boincer umatlas 409254072 Nov 26 21:05 EVNT.47483658._002204.pool.root.1
[2025-11-28 05:29:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 21:05 start_atlas.sh
[2025-11-28 05:29:50] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 21:05 shared
[2025-11-28 05:29:50] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 21:05 input.tar.gz
[2025-11-28 05:29:50] -rw-r--r--. 1 boincer umatlas         0 Nov 26 21:05 boinc_lockfile
[2025-11-28 05:29:50] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 21:05 pandaJob.out
[2025-11-28 05:29:50] -rw-------. 1 boincer umatlas        57 Nov 26 21:05 setup.sh.local
[2025-11-28 05:29:50] -rw-------. 1 boincer umatlas    991530 Nov 26 21:06 agis_schedconf.cvmfs.json
[2025-11-28 05:29:50] drwx------. 5 boincer umatlas      4096 Nov 26 21:06 pilot3
[2025-11-28 05:29:50] -rw-r--r--. 1 boincer umatlas       533 Nov 28 04:42 boinc_task_state.xml
[2025-11-28 05:29:50] -rw-------. 1 boincer umatlas 912455520 Nov 28 05:26 HITS.47556161._001875.pool.root.1
[2025-11-28 05:29:50] -rw-r--r--. 1 boincer umatlas      6881 Nov 28 05:27 init_data.xml
[2025-11-28 05:29:50] -rw-------. 1 boincer umatlas      1062 Nov 28 05:28 memory_monitor_summary.json
[2025-11-28 05:29:50] -rw-------. 1 boincer umatlas   1516240 Nov 28 05:28 agis_ddmendpoints.agis.ALL.json
[2025-11-28 05:29:50] -rw-------. 1 boincer umatlas   2751439 Nov 28 05:28 log.47556161._001875.job.log.tgz.1
[2025-11-28 05:29:50] -rw-------. 1 boincer umatlas        95 Nov 28 05:28 pilot_heartbeat.json
[2025-11-28 05:29:50] -rw-------. 1 boincer umatlas      8624 Nov 28 05:28 heartbeat.json
[2025-11-28 05:29:50] -rw-------. 1 boincer umatlas      4825 Nov 28 05:29 pilotlog.txt
[2025-11-28 05:29:50] -rw-------. 1 boincer umatlas  13994303 Nov 28 05:29 log.47556161._001875.job.log.1
[2025-11-28 05:29:50] -rw-------. 1 boincer umatlas       353 Nov 28 05:29 output.list
[2025-11-28 05:29:50] -rw-r--r--. 1 boincer umatlas        29 Nov 28 05:29 wrapper_checkpoint.txt
[2025-11-28 05:29:50] -rw-r--r--. 1 boincer umatlas       620 Nov 28 05:29 runtime_log
[2025-11-28 05:29:50] -rw-------. 1 boincer umatlas  16762880 Nov 28 05:29 result.tar.gz
[2025-11-28 05:29:50] -rw-r--r--. 1 boincer umatlas      9354 Nov 28 05:29 runtime_log.err
[2025-11-28 05:29:50] -rw-------. 1 boincer umatlas       665 Nov 28 05:29 eFINDm6WBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTZJKDmAeRGpm.diag
[2025-11-28 05:29:50] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 05:29 boinc_mmap_file
[2025-11-28 05:29:50] -rw-r--r--. 1 boincer umatlas     21889 Nov 28 05:29 stderr.txt
[2025-11-28 05:29:50] HITS file was successfully produced:
[2025-11-28 05:29:50] -rw-------. 1 boincer umatlas 912455520 Nov 28 05:26 shared/HITS.pool.root.1
[2025-11-28 05:29:50]  *** Contents of shared directory: ***
[2025-11-28 05:29:50] total 1307712
[2025-11-28 05:29:50] -rw-r--r--. 2 boincer umatlas 409254072 Nov 26 21:05 ATLAS.root_0
[2025-11-28 05:29:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 21:05 start_atlas.sh
[2025-11-28 05:29:50] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 21:05 input.tar.gz
[2025-11-28 05:29:50] -rw-------. 1 boincer umatlas 912455520 Nov 28 05:26 HITS.pool.root.1
[2025-11-28 05:29:50] -rw-------. 1 boincer umatlas  16762880 Nov 28 05:29 result.tar.gz
05:29:52 (4090945): run_atlas exited; CPU time 269773.563880
05:29:52 (4090945): called boinc_finish(0)

</stderr_txt>
]]>

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