Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:15:26 (2628337): wrapper (7.7.26015): starting
18:15:26 (2628337): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 18:15:26] Arguments: --nthreads 12
[2025-11-26 18:15:26] Threads: 12
[2025-11-26 18:15:26] Checking for CVMFS
[2025-11-26 18:15:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:15:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:15:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:15:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:15:26] 2.11.5.0 1657931 29113 226320 153342 1 424 28737310 45568001 22757 130560 0 281387228 99.757 202048106 25478 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-26 18:15:26] CVMFS is ok
[2025-11-26 18:15:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:15:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:15:26] Further information can be found at the LHC@home message board.
[2025-11-26 18:15:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:15:26] Checking for apptainer binary...
[2025-11-26 18:15:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:15:26] Running /usr/bin/apptainer --version
[2025-11-26 18:15:26] apptainer version 1.4.1-1.el9
[2025-11-26 18:15:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:15:26] wns0039.triumf.lcg
[2025-11-26 18:15:26] apptainer works
[2025-11-26 18:15:26] Set ATHENA_PROC_NUMBER=12
[2025-11-26 18:15:26] Set ATHENA_CORE_NUMBER=12
[2025-11-26 18:15:26] Starting ATLAS job with PandaID=6898490913
[2025-11-26 18:15:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:19:41]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:19:41] 2025-11-27 02:18:44,940 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 18:19:41] 2025-11-27 02:18:44,941 | WARNING  | wrong length of table data, x=[1764209757.0], y=[1792.0] (must be same and length>=4)
[2025-11-26 18:19:41] 2025-11-27 02:18:44,941 | INFO     | could have reported an average CPU frequency of 2587 MHz (4 samples)
[2025-11-26 18:19:41] 2025-11-27 02:18:44,941 | INFO     | ..............................
[2025-11-26 18:19:41] 2025-11-27 02:18:44,941 | INFO     | . Timing measurements:
[2025-11-26 18:19:41] 2025-11-27 02:18:44,941 | INFO     | . get job = 0 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . initial setup = 2 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . payload setup = 4 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . stage-in = 0 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . payload execution = 45 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . stage-out = 0 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . log creation = 0 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | ..............................
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898490913/pilotlog.txt
[2025-11-26 18:19:41] 2025-11-27 02:18:44,950 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 18:19:41] - Log from pilotlog.txt -
[2025-11-26 18:19:41] 2025-11-27 02:18:44,939 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898490913/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:19:41] 2025-11-27 02:18:44,939 | INFO     | extracted standard info from prmon json
[2025-11-26 18:19:41] 2025-11-27 02:18:44,939 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:19:41] 2025-11-27 02:18:44,939 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:19:41] 2025-11-27 02:18:44,940 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 18:19:41] 2025-11-27 02:18:44,940 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 18:19:41] 2025-11-27 02:18:44,941 | WARNING  | wrong length of table data, x=[1764209757.0], y=[1792.0] (must be same and length>=4)
[2025-11-26 18:19:41] 2025-11-27 02:18:44,941 | INFO     | could have reported an average CPU frequency of 2587 MHz (4 samples)
[2025-11-26 18:19:41] 2025-11-27 02:18:44,941 | INFO     | ..............................
[2025-11-26 18:19:41] 2025-11-27 02:18:44,941 | INFO     | . Timing measurements:
[2025-11-26 18:19:41] 2025-11-27 02:18:44,941 | INFO     | . get job = 0 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . initial setup = 2 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . payload setup = 4 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . stage-in = 0 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . payload execution = 45 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . stage-out = 0 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . log creation = 0 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | ..............................
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898490913/pilotlog.txt
[2025-11-26 18:19:41] 2025-11-27 02:18:44,951 | WARNING  | 
[2025-11-26 18:19:41] [begin log extracts]
[2025-11-26 18:19:41] - Log from pilotlog.txt -
[2025-11-26 18:19:41] 2025-11-27 02:18:44,939 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898490913/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:19:41] 2025-11-27 02:18:44,939 | INFO     | extracted standard info from prmon json
[2025-11-26 18:19:41] 2025-11-27 02:18:44,939 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:19:41] 2025-11-27 02:18:44,939 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:19:41] 2025-11-27 02:18:44,940 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 18:19:41] 2025-11-27 02:18:44,940 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 18:19:41] 2025-11-27 02:18:44,941 | WARNING  | wrong length of table data, x=[1764209757.0], y=[1792.0] (must be same and length>=4)
[2025-11-26 18:19:41] 2025-11-27 02:18:44,941 | INFO     | could have reported an average CPU frequency of 2587 MHz (4 samples)
[2025-11-26 18:19:41] 2025-11-27 02:18:44,941 | INFO     | ..............................
[2025-11-26 18:19:41] 2025-11-27 02:18:44,941 | INFO     | . Timing measurements:
[2025-11-26 18:19:41] 2025-11-27 02:18:44,941 | INFO     | . get job = 0 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . initial setup = 2 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . payload setup = 4 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . stage-in = 0 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . payload execution = 45 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . stage-out = 0 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | . log creation = 0 s
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | ..............................
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 18:19:41] 2025-11-27 02:18:44,942 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898490913/pilotlog.txt
[2025-11-26 18:19:41] [end log extracts]
[2025-11-26 18:19:41] 2025-11-27 02:18:44,951 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 18:19:41] 2025-11-27 02:18:44,951 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 18:19:41] 2025-11-27 02:18:45,005 | INFO     | 
[2025-11-26 18:19:41] 2025-11-27 02:18:45,005 | INFO     | job summary report
[2025-11-26 18:19:41] 2025-11-27 02:18:45,005 | INFO     | --------------------------------------------------
[2025-11-26 18:19:41] 2025-11-27 02:18:45,005 | INFO     | PanDA job id: 6898490913
[2025-11-26 18:19:41] 2025-11-27 02:18:45,005 | INFO     | task id: 47556173
[2025-11-26 18:19:41] 2025-11-27 02:18:45,005 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 18:16:35,729 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 18:19:41] 2025-11-27 02:18:45,005 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 18:19:41] 2025-11-27 02:18:45,005 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | pilot state: failed 
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | transexitcode: 65
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | exeerrorcode: 65
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | exitcode: 65
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | cpuconsumptiontime: 38 s
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | nevents: 0
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | neventsw: 0
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | pid: 2638578
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | pgrp: 2638578
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | corecount: 12
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | event service: False
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | sizes: {0: 2284307, 4: 2284569, 11: 2284597, 54: 2310075, 55: 2314365, 56: 2314393, 176: 2314747}
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | --------------------------------------------------
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | 
[2025-11-26 18:19:41] 2025-11-27 02:18:45,006 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 18:19:41] 2025-11-27 02:18:45,019 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,019 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,019 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,019 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,019 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,019 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,019 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,019 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,020 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,020 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,020 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,020 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,020 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,020 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,020 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,020 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,020 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,020 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:19:41] 2025-11-27 02:18:45,020 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,020 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:19:41] 2025-11-27 02:18:45,020 | INFO     | job 6898490913 has completed (purged errors)
[2025-11-26 18:19:41] 2025-11-27 02:18:45,020 | INFO     | overall cleanup function is called
[2025-11-26 18:19:41] 2025-11-27 02:18:46,027 | INFO     | --- collectZombieJob: --- 10, [2638578]
[2025-11-26 18:19:41] 2025-11-27 02:18:46,027 | INFO     | zombie collector waiting for pid 2638578
[2025-11-26 18:19:41] 2025-11-27 02:18:46,027 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:19:41] 2025-11-27 02:18:46,027 | INFO     | collected zombie processes
[2025-11-26 18:19:41] 2025-11-27 02:18:46,027 | INFO     | will attempt to kill all subprocesses of pid=2638578
[2025-11-26 18:19:41] 2025-11-27 02:18:46,183 | INFO     | process IDs to be killed: [2638578] (in reverse order)
[2025-11-26 18:19:41] 2025-11-27 02:18:46,242 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:19:41] 2025-11-27 02:18:46,243 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:19:41] 2025-11-27 02:18:46,249 | INFO     | did not find any defunct processes belonging to 2638578
[2025-11-26 18:19:41] 2025-11-27 02:18:46,255 | INFO     | did not find any defunct processes belonging to 2638578
[2025-11-26 18:19:41] 2025-11-27 02:18:46,256 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:19:41] 2025-11-27 02:18:46,256 | INFO     | ready for new job
[2025-11-26 18:19:41] 2025-11-27 02:18:46,256 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:19:41] 2025-11-27 02:18:46,257 | INFO     | ***************************************
[2025-11-26 18:19:41] 2025-11-27 02:18:46,258 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:19:41] 2025-11-27 02:18:46,258 | INFO     | ***************************************
[2025-11-26 18:19:41] 2025-11-27 02:18:46,258 | INFO     | 
[2025-11-26 18:19:41] 2025-11-27 02:18:46,259 | INFO     | architecture information:
[2025-11-26 18:19:41] 2025-11-27 02:18:46,260 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:19:41] 2025-11-27 02:18:46,270 | INFO     | cat /etc/os-release:
[2025-11-26 18:19:41] NAME="CentOS Linux"
[2025-11-26 18:19:41] VERSION="7 (Core)"
[2025-11-26 18:19:41] ID="centos"
[2025-11-26 18:19:41] ID_LIKE="rhel fedora"
[2025-11-26 18:19:41] VERSION_ID="7"
[2025-11-26 18:19:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:19:41] ANSI_COLOR="0;31"
[2025-11-26 18:19:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:19:41] HOME_URL="https://www.centos.org/"
[2025-11-26 18:19:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:19:41] 
[2025-11-26 18:19:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:19:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:19:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:19:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:19:41] 
[2025-11-26 18:19:41] 2025-11-27 02:18:46,270 | INFO     | ***************************************
[2025-11-26 18:19:41] 2025-11-27 02:18:46,773 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 18:19:41] 2025-11-27 02:18:46,784 | INFO     | sufficient remaining disk space (1802104733696 B)
[2025-11-26 18:19:41] 2025-11-27 02:18:46,784 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:19:41] 2025-11-27 02:18:46,784 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:19:41] 2025-11-27 02:18:46,785 | INFO     | update_server=False
[2025-11-26 18:19:41] 2025-11-27 02:18:46,785 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:19:41] 2025-11-27 02:18:46,785 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:19:41] 2025-11-27 02:18:46,960 | INFO     | all data control threads have been joined
[2025-11-26 18:19:41] 2025-11-27 02:18:47,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:19:41] 2025-11-27 02:18:47,024 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:19:41] 2025-11-27 02:18:47,024 | INFO     | aborting loop
[2025-11-26 18:19:41] 2025-11-27 02:18:47,491 | INFO     | all payload control threads have been joined
[2025-11-26 18:19:41] 2025-11-27 02:18:47,683 | INFO     | all job control threads have been joined
[2025-11-26 18:19:41] 2025-11-27 02:18:47,689 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:19:41] 2025-11-27 02:18:47,790 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:19:41] 2025-11-27 02:18:47,790 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:19:41] 2025-11-27 02:18:47,937 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:19:41] 2025-11-27 02:18:47,965 | INFO     | [data] control thread has finished
[2025-11-26 18:19:41] 2025-11-27 02:18:48,029 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:19:41] 2025-11-27 02:18:48,385 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:19:41] 2025-11-27 02:18:48,496 | INFO     | [payload] control thread has finished
[2025-11-26 18:19:41] 2025-11-27 02:18:48,544 | INFO     | [job] validate thread has finished
[2025-11-26 18:19:41] 2025-11-27 02:18:48,688 | INFO     | [job] control thread has finished
[2025-11-26 18:19:41] 2025-11-27 02:18:48,711 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:19:41] 2025-11-27 02:18:48,784 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:19:41] 2025-11-27 02:18:48,804 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:19:41] 2025-11-27 02:18:48,955 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:19:41] 2025-11-27 02:18:48,969 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:19:41] 2025-11-27 02:18:49,016 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:19:41] 2025-11-27 02:18:51,694 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:19:41] 2025-11-27 02:19:16,928 | INFO     | PID=2632016 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:19:41] 2025-11-27 02:19:16,928 | INFO     | .. there are 21 such processes running
[2025-11-26 18:19:41] 2025-11-27 02:19:16,928 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:19:41] 2025-11-27 02:19:16,928 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:19:41] 2025-11-27 02:19:16,928 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:19:41] 2025-11-27 02:19:34,889 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:19:41] 2025-11-27 02:19:35,804 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139696603023168)>', '<ExcThread(monitor, started 139696042645248)>']
[2025-11-26 18:19:41] 2025-11-27 02:19:36,028 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:19:41] 2025-11-27 02:19:36,028 | INFO     | [monitor] control thread has ended
[2025-11-26 18:19:41] 2025-11-27 02:19:40,829 | INFO     | all workflow threads have been joined
[2025-11-26 18:19:41] 2025-11-27 02:19:40,829 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:19:41] 2025-11-27 02:19:40,830 | INFO     | traces error code: 0
[2025-11-26 18:19:41] 2025-11-27 02:19:40,830 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:19:41] 2025-11-27 02:19:40,932 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:19:41] 2025-11-27 02:19:40,934 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:19:41] 2025-11-27 02:19:40,936 [wrapper] pilotpid: 2632016
[2025-11-26 18:19:41] 2025-11-27 02:19:40,938 [wrapper] Pilot exit status: 0
[2025-11-26 18:19:41] 2025-11-27 02:19:40,944 [wrapper] pandaids: 6898490913
[2025-11-26 18:19:41] 2025-11-27 02:19:40,983 [wrapper] cleanup supervisor_pilot 2632022 2632017
[2025-11-26 18:19:41] 2025-11-27 02:19:40,984 [wrapper] Test setup, not cleaning
[2025-11-26 18:19:41] 2025-11-27 02:19:40,986 [wrapper] apfmon messages muted
[2025-11-26 18:19:41] 2025-11-27 02:19:40,988 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:19:41] 2025-11-27 02:19:40,989 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:19:41]  *** Error codes and diagnostics ***
[2025-11-26 18:19:41]     "exeErrorCode": 65,
[2025-11-26 18:19:41]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 18:19:41]     "pilotErrorCode": 1305,
[2025-11-26 18:19:41]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 18:19:41]  *** Listing of results directory ***
[2025-11-26 18:19:41] total 402396
[2025-11-26 18:19:41] -rw-r--r--. 1 boinc boinc    576529 Nov 26 08:12 pilot3.tar.gz
[2025-11-26 18:19:41] -rwx------. 1 boinc boinc     36292 Nov 26 08:36 runpilot2-wrapper.sh
[2025-11-26 18:19:41] -rw-r--r--. 1 boinc boinc      5112 Nov 26 08:37 queuedata.json
[2025-11-26 18:19:41] -rw-r--r--. 1 boinc boinc       100 Nov 26 18:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:19:41] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 18:15 run_atlas
[2025-11-26 18:19:41] -rw-r--r--. 1 boinc boinc       105 Nov 26 18:15 job.xml
[2025-11-26 18:19:41] -rw-r--r--. 2 boinc boinc 407859050 Nov 26 18:15 EVNT.47483658._003221.pool.root.1
[2025-11-26 18:19:41] -rw-r--r--. 1 boinc boinc      6595 Nov 26 18:15 init_data.xml
[2025-11-26 18:19:41] -rw-r--r--. 2 boinc boinc     15847 Nov 26 18:15 start_atlas.sh
[2025-11-26 18:19:41] drwxrwx--x. 2 boinc boinc      4096 Nov 26 18:15 shared
[2025-11-26 18:19:41] -rw-r--r--. 2 boinc boinc    590106 Nov 26 18:15 input.tar.gz
[2025-11-26 18:19:41] -rw-r--r--. 1 boinc boinc         0 Nov 26 18:15 boinc_lockfile
[2025-11-26 18:19:41] -rw-r--r--. 1 boinc boinc      2784 Nov 26 18:15 pandaJob.out
[2025-11-26 18:19:41] -rw-------. 1 boinc boinc    991530 Nov 26 18:15 agis_schedconf.cvmfs.json
[2025-11-26 18:19:41] -rw-------. 1 boinc boinc   1516240 Nov 26 18:15 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:19:41] drwx------. 5 boinc boinc      4096 Nov 26 18:15 pilot3
[2025-11-26 18:19:41] -rw-r--r--. 1 boinc boinc       523 Nov 26 18:16 boinc_task_state.xml
[2025-11-26 18:19:41] -rw-------. 1 boinc boinc       989 Nov 26 18:16 memory_monitor_summary.json
[2025-11-26 18:19:41] -rw-------. 1 boinc boinc     47618 Nov 26 18:16 log.47556173._001771.job.log.tgz.1
[2025-11-26 18:19:41] -rw-------. 1 boinc boinc        95 Nov 26 18:18 pilot_heartbeat.json
[2025-11-26 18:19:41] -rw-------. 1 boinc boinc     10314 Nov 26 18:18 heartbeat.json
[2025-11-26 18:19:41] -rw-r--r--. 1 boinc boinc      8192 Nov 26 18:19 boinc_mmap_file
[2025-11-26 18:19:41] -rw-r--r--. 1 boinc boinc        23 Nov 26 18:19 wrapper_checkpoint.txt
[2025-11-26 18:19:41] -rw-------. 1 boinc boinc      4823 Nov 26 18:19 pilotlog.txt
[2025-11-26 18:19:41] -rw-------. 1 boinc boinc     92493 Nov 26 18:19 log.47556173._001771.job.log.1
[2025-11-26 18:19:41] -rw-------. 1 boinc boinc       186 Nov 26 18:19 output.list
[2025-11-26 18:19:41] -rw-r--r--. 1 boinc boinc       620 Nov 26 18:19 runtime_log
[2025-11-26 18:19:41] -rw-------. 1 boinc boinc    163840 Nov 26 18:19 result.tar.gz
[2025-11-26 18:19:41] -rw-r--r--. 1 boinc boinc      8636 Nov 26 18:19 runtime_log.err
[2025-11-26 18:19:41] -rw-------. 1 boinc boinc       646 Nov 26 18:19 AiqLDmRgXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAGNKDmXC6QVn.diag
[2025-11-26 18:19:41] -rw-r--r--. 1 boinc boinc     22394 Nov 26 18:19 stderr.txt
[2025-11-26 18:19:41] No HITS result produced
[2025-11-26 18:19:41]  *** Contents of shared directory: ***
[2025-11-26 18:19:41] total 399060
[2025-11-26 18:19:41] -rw-r--r--. 2 boinc boinc 407859050 Nov 26 18:15 ATLAS.root_0
[2025-11-26 18:19:41] -rw-r--r--. 2 boinc boinc     15847 Nov 26 18:15 start_atlas.sh
[2025-11-26 18:19:41] -rw-r--r--. 2 boinc boinc    590106 Nov 26 18:15 input.tar.gz
[2025-11-26 18:19:41] -rw-------. 1 boinc boinc    163840 Nov 26 18:19 result.tar.gz
18:19:42 (2628337): run_atlas exited; CPU time 38.145456
18:19:42 (2628337): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN