Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:48:26 (1338509): wrapper (7.7.26015): starting
17:48:26 (1338509): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 17:48:26] Arguments: --nthreads 8
[2025-11-26 17:48:26] Threads: 8
[2025-11-26 17:48:26] Checking for CVMFS
[2025-11-26 17:48:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:48:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:48:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:48:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:48:26] 2.11.3.0 3352839 29187 166240 153342 2 560 42166310 45568000 17135 130560 0 193686011 99.783 130202874 24559 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 17:48:26] CVMFS is ok
[2025-11-26 17:48:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:48:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:48:26] Further information can be found at the LHC@home message board.
[2025-11-26 17:48:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:48:26] Checking for apptainer binary...
[2025-11-26 17:48:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:48:26] Running /usr/bin/apptainer --version
[2025-11-26 17:48:26] apptainer version 1.4.1-1.el9
[2025-11-26 17:48:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:48:26] wns0010.triumf.lcg
[2025-11-26 17:48:26] apptainer works
[2025-11-26 17:48:26] Set ATHENA_PROC_NUMBER=8
[2025-11-26 17:48:26] Set ATHENA_CORE_NUMBER=8
[2025-11-26 17:48:26] Starting ATLAS job with PandaID=6898687463
[2025-11-26 17:48:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:52:42]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:52:42] 2025-11-27 01:51:53,735 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 17:52:42] 2025-11-27 01:51:53,736 | WARNING  | wrong length of table data, x=[1764208139.0], y=[1102.0] (must be same and length>=4)
[2025-11-26 17:52:42] 2025-11-27 01:51:53,736 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 17:52:42] 2025-11-27 01:51:53,736 | INFO     | ..............................
[2025-11-26 17:52:42] 2025-11-27 01:51:53,736 | INFO     | . Timing measurements:
[2025-11-26 17:52:42] 2025-11-27 01:51:53,736 | INFO     | . get job = 0 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . initial setup = 2 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . payload setup = 4 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . stage-in = 0 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . payload execution = 56 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . stage-out = 0 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . log creation = 0 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | ..............................
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898687463/pilotlog.txt
[2025-11-26 17:52:42] 2025-11-27 01:51:53,746 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 17:52:42] - Log from pilotlog.txt -
[2025-11-26 17:52:42] 2025-11-27 01:51:53,734 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898687463/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 17:52:42] 2025-11-27 01:51:53,734 | INFO     | extracted standard info from prmon json
[2025-11-26 17:52:42] 2025-11-27 01:51:53,734 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 17:52:42] 2025-11-27 01:51:53,735 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 17:52:42] 2025-11-27 01:51:53,735 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 17:52:42] 2025-11-27 01:51:53,735 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 17:52:42] 2025-11-27 01:51:53,736 | WARNING  | wrong length of table data, x=[1764208139.0], y=[1102.0] (must be same and length>=4)
[2025-11-26 17:52:42] 2025-11-27 01:51:53,736 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 17:52:42] 2025-11-27 01:51:53,736 | INFO     | ..............................
[2025-11-26 17:52:42] 2025-11-27 01:51:53,736 | INFO     | . Timing measurements:
[2025-11-26 17:52:42] 2025-11-27 01:51:53,736 | INFO     | . get job = 0 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . initial setup = 2 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . payload setup = 4 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . stage-in = 0 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . payload execution = 56 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . stage-out = 0 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . log creation = 0 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | ..............................
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898687463/pilotlog.txt
[2025-11-26 17:52:42] 2025-11-27 01:51:53,747 | WARNING  | 
[2025-11-26 17:52:42] [begin log extracts]
[2025-11-26 17:52:42] - Log from pilotlog.txt -
[2025-11-26 17:52:42] 2025-11-27 01:51:53,734 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898687463/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 17:52:42] 2025-11-27 01:51:53,734 | INFO     | extracted standard info from prmon json
[2025-11-26 17:52:42] 2025-11-27 01:51:53,734 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 17:52:42] 2025-11-27 01:51:53,735 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 17:52:42] 2025-11-27 01:51:53,735 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 17:52:42] 2025-11-27 01:51:53,735 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 17:52:42] 2025-11-27 01:51:53,736 | WARNING  | wrong length of table data, x=[1764208139.0], y=[1102.0] (must be same and length>=4)
[2025-11-26 17:52:42] 2025-11-27 01:51:53,736 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 17:52:42] 2025-11-27 01:51:53,736 | INFO     | ..............................
[2025-11-26 17:52:42] 2025-11-27 01:51:53,736 | INFO     | . Timing measurements:
[2025-11-26 17:52:42] 2025-11-27 01:51:53,736 | INFO     | . get job = 0 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . initial setup = 2 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . payload setup = 4 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . stage-in = 0 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . payload execution = 56 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . stage-out = 0 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | . log creation = 0 s
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | ..............................
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 17:52:42] 2025-11-27 01:51:53,737 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898687463/pilotlog.txt
[2025-11-26 17:52:42] [end log extracts]
[2025-11-26 17:52:42] 2025-11-27 01:51:53,747 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 17:52:42] 2025-11-27 01:51:53,748 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 17:52:42] 2025-11-27 01:51:54,137 | INFO     | 
[2025-11-26 17:52:42] 2025-11-27 01:51:54,137 | INFO     | job summary report
[2025-11-26 17:52:42] 2025-11-27 01:51:54,137 | INFO     | --------------------------------------------------
[2025-11-26 17:52:42] 2025-11-27 01:51:54,137 | INFO     | PanDA job id: 6898687463
[2025-11-26 17:52:42] 2025-11-27 01:51:54,137 | INFO     | task id: 47556161
[2025-11-26 17:52:42] 2025-11-27 01:51:54,138 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 17:49:47,463 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 17:52:42] 2025-11-27 01:51:54,138 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 17:52:42] 2025-11-27 01:51:54,138 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 17:52:42] 2025-11-27 01:51:54,138 | INFO     | pilot state: failed 
[2025-11-26 17:52:42] 2025-11-27 01:51:54,138 | INFO     | transexitcode: 65
[2025-11-26 17:52:42] 2025-11-27 01:51:54,138 | INFO     | exeerrorcode: 65
[2025-11-26 17:52:42] 2025-11-27 01:51:54,138 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 17:52:42] 2025-11-27 01:51:54,138 | INFO     | exitcode: 65
[2025-11-26 17:52:42] 2025-11-27 01:51:54,138 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 17:52:42] 2025-11-27 01:51:54,138 | INFO     | cpuconsumptiontime: 48 s
[2025-11-26 17:52:42] 2025-11-27 01:51:54,138 | INFO     | nevents: 0
[2025-11-26 17:52:42] 2025-11-27 01:51:54,138 | INFO     | neventsw: 0
[2025-11-26 17:52:42] 2025-11-27 01:51:54,138 | INFO     | pid: 1348713
[2025-11-26 17:52:42] 2025-11-27 01:51:54,138 | INFO     | pgrp: 1348713
[2025-11-26 17:52:42] 2025-11-27 01:51:54,138 | INFO     | corecount: 8
[2025-11-26 17:52:42] 2025-11-27 01:51:54,139 | INFO     | event service: False
[2025-11-26 17:52:42] 2025-11-27 01:51:54,139 | INFO     | sizes: {0: 2284307, 3: 2284569, 11: 2284597, 64: 2310122, 65: 2314440, 184: 2314578}
[2025-11-26 17:52:42] 2025-11-27 01:51:54,139 | INFO     | --------------------------------------------------
[2025-11-26 17:52:42] 2025-11-27 01:51:54,139 | INFO     | 
[2025-11-26 17:52:42] 2025-11-27 01:51:54,139 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 17:52:42] 2025-11-27 01:51:54,153 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,154 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,154 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,154 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,154 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,154 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,154 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,154 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,154 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,154 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,155 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,155 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,155 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,155 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,155 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,155 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,155 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,155 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 17:52:42] 2025-11-27 01:51:54,155 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,155 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 17:52:42] 2025-11-27 01:51:54,155 | INFO     | job 6898687463 has completed (purged errors)
[2025-11-26 17:52:42] 2025-11-27 01:51:54,155 | INFO     | overall cleanup function is called
[2025-11-26 17:52:42] 2025-11-27 01:51:55,161 | INFO     | --- collectZombieJob: --- 10, [1348713]
[2025-11-26 17:52:42] 2025-11-27 01:51:55,161 | INFO     | zombie collector waiting for pid 1348713
[2025-11-26 17:52:42] 2025-11-27 01:51:55,161 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 17:52:42] 2025-11-27 01:51:55,161 | INFO     | collected zombie processes
[2025-11-26 17:52:42] 2025-11-27 01:51:55,161 | INFO     | will attempt to kill all subprocesses of pid=1348713
[2025-11-26 17:52:42] 2025-11-27 01:51:55,340 | INFO     | process IDs to be killed: [1348713] (in reverse order)
[2025-11-26 17:52:42] 2025-11-27 01:51:55,393 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 17:52:42] 2025-11-27 01:51:55,393 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 17:52:42] 2025-11-27 01:51:55,399 | INFO     | did not find any defunct processes belonging to 1348713
[2025-11-26 17:52:42] 2025-11-27 01:51:55,405 | INFO     | did not find any defunct processes belonging to 1348713
[2025-11-26 17:52:42] 2025-11-27 01:51:55,406 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 17:52:42] 2025-11-27 01:51:55,406 | INFO     | ready for new job
[2025-11-26 17:52:42] 2025-11-27 01:51:55,406 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 17:52:42] 2025-11-27 01:51:55,408 | INFO     | ***************************************
[2025-11-26 17:52:42] 2025-11-27 01:51:55,408 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 17:52:42] 2025-11-27 01:51:55,408 | INFO     | ***************************************
[2025-11-26 17:52:42] 2025-11-27 01:51:55,408 | INFO     | 
[2025-11-26 17:52:42] 2025-11-27 01:51:55,409 | INFO     | architecture information:
[2025-11-26 17:52:42] 2025-11-27 01:51:55,410 | INFO     | executing command: cat /etc/os-release
[2025-11-26 17:52:42] 2025-11-27 01:51:55,420 | INFO     | cat /etc/os-release:
[2025-11-26 17:52:42] NAME="CentOS Linux"
[2025-11-26 17:52:42] VERSION="7 (Core)"
[2025-11-26 17:52:42] ID="centos"
[2025-11-26 17:52:42] ID_LIKE="rhel fedora"
[2025-11-26 17:52:42] VERSION_ID="7"
[2025-11-26 17:52:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 17:52:42] ANSI_COLOR="0;31"
[2025-11-26 17:52:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 17:52:42] HOME_URL="https://www.centos.org/"
[2025-11-26 17:52:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 17:52:42] 
[2025-11-26 17:52:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 17:52:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 17:52:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 17:52:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 17:52:42] 
[2025-11-26 17:52:42] 2025-11-27 01:51:55,421 | INFO     | ***************************************
[2025-11-26 17:52:42] 2025-11-27 01:51:55,924 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 17:52:42] 2025-11-27 01:51:55,935 | INFO     | sufficient remaining disk space (1227354013696 B)
[2025-11-26 17:52:42] 2025-11-27 01:51:55,935 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 17:52:42] 2025-11-27 01:51:55,935 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 17:52:42] 2025-11-27 01:51:55,935 | INFO     | update_server=False
[2025-11-26 17:52:42] 2025-11-27 01:51:55,935 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:52:42] 2025-11-27 01:51:55,935 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:52:42] 2025-11-27 01:51:55,936 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:52:42] 2025-11-27 01:51:55,936 | INFO     | aborting loop
[2025-11-26 17:52:42] 2025-11-27 01:51:56,338 | INFO     | all data control threads have been joined
[2025-11-26 17:52:42] 2025-11-27 01:51:56,725 | INFO     | all job control threads have been joined
[2025-11-26 17:52:42] 2025-11-27 01:51:56,938 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:52:42] 2025-11-27 01:51:56,941 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:52:42] 2025-11-27 01:51:56,990 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:52:42] 2025-11-27 01:51:57,039 | INFO     | all payload control threads have been joined
[2025-11-26 17:52:42] 2025-11-27 01:51:57,211 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:52:42] 2025-11-27 01:51:57,344 | INFO     | [data] control thread has finished
[2025-11-26 17:52:42] 2025-11-27 01:51:57,392 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:52:42] 2025-11-27 01:51:57,468 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:52:42] 2025-11-27 01:51:57,730 | INFO     | [job] control thread has finished
[2025-11-26 17:52:42] 2025-11-27 01:51:57,941 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:52:42] 2025-11-27 01:51:58,032 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:52:42] 2025-11-27 01:51:58,045 | INFO     | [payload] control thread has finished
[2025-11-26 17:52:42] 2025-11-27 01:51:58,168 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:52:42] 2025-11-27 01:51:58,197 | INFO     | [job] validate thread has finished
[2025-11-26 17:52:42] 2025-11-27 01:51:58,243 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:52:42] 2025-11-27 01:51:58,371 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:52:42] 2025-11-27 01:51:58,829 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:52:42] 2025-11-27 01:51:59,834 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:52:42] 2025-11-27 01:52:02,036 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:52:42] 2025-11-27 01:52:25,818 | INFO     | PID=1342162 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 17:52:42] 2025-11-27 01:52:25,819 | INFO     | .. there are 19 such processes running
[2025-11-26 17:52:42] 2025-11-27 01:52:25,819 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:52:42] 2025-11-27 01:52:25,819 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:52:42] 2025-11-27 01:52:25,819 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:52:42] 2025-11-27 01:52:35,486 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:52:42] 2025-11-27 01:52:37,220 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140407440213824)>', '<ExcThread(monitor, started 140406759085824)>']
[2025-11-26 17:52:42] 2025-11-27 01:52:37,871 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:52:42] 2025-11-27 01:52:37,871 | INFO     | [monitor] control thread has ended
[2025-11-26 17:52:42] 2025-11-27 01:52:42,240 | INFO     | all workflow threads have been joined
[2025-11-26 17:52:42] 2025-11-27 01:52:42,241 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:52:42] 2025-11-27 01:52:42,241 | INFO     | traces error code: 0
[2025-11-26 17:52:42] 2025-11-27 01:52:42,242 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:52:42] 2025-11-27 01:52:42,353 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:52:42] 2025-11-27 01:52:42,355 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:52:42] 2025-11-27 01:52:42,358 [wrapper] pilotpid: 1342162
[2025-11-26 17:52:42] 2025-11-27 01:52:42,360 [wrapper] Pilot exit status: 0
[2025-11-26 17:52:42] 2025-11-27 01:52:42,369 [wrapper] pandaids: 6898687463
[2025-11-26 17:52:42] 2025-11-27 01:52:42,404 [wrapper] cleanup supervisor_pilot 1342168 1342163
[2025-11-26 17:52:42] 2025-11-27 01:52:42,406 [wrapper] Test setup, not cleaning
[2025-11-26 17:52:42] 2025-11-27 01:52:42,408 [wrapper] apfmon messages muted
[2025-11-26 17:52:42] 2025-11-27 01:52:42,410 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:52:42] 2025-11-27 01:52:42,413 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:52:42]  *** Error codes and diagnostics ***
[2025-11-26 17:52:42]     "exeErrorCode": 65,
[2025-11-26 17:52:42]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 17:52:42]     "pilotErrorCode": 1305,
[2025-11-26 17:52:42]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 17:52:42]  *** Listing of results directory ***
[2025-11-26 17:52:42] total 405372
[2025-11-26 17:52:42] -rw-r--r--. 1 boinc boinc    576529 Nov 26 08:12 pilot3.tar.gz
[2025-11-26 17:52:42] -rwx------. 1 boinc boinc     36292 Nov 26 08:36 runpilot2-wrapper.sh
[2025-11-26 17:52:42] -rw-r--r--. 1 boinc boinc      5112 Nov 26 08:37 queuedata.json
[2025-11-26 17:52:42] -rw-r--r--. 1 boinc boinc       100 Nov 26 17:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:52:42] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 17:48 run_atlas
[2025-11-26 17:52:42] -rw-r--r--. 1 boinc boinc       105 Nov 26 17:48 job.xml
[2025-11-26 17:52:42] -rw-r--r--. 1 boinc boinc      6445 Nov 26 17:48 init_data.xml
[2025-11-26 17:52:42] -rw-r--r--. 2 boinc boinc 410904213 Nov 26 17:48 EVNT.47483658._002673.pool.root.1
[2025-11-26 17:52:42] -rw-r--r--. 2 boinc boinc     15847 Nov 26 17:48 start_atlas.sh
[2025-11-26 17:52:42] drwxrwx--x. 2 boinc boinc      4096 Nov 26 17:48 shared
[2025-11-26 17:52:42] -rw-r--r--. 2 boinc boinc    590109 Nov 26 17:48 input.tar.gz
[2025-11-26 17:52:42] -rw-r--r--. 1 boinc boinc         0 Nov 26 17:48 boinc_lockfile
[2025-11-26 17:52:42] -rw-r--r--. 1 boinc boinc      2784 Nov 26 17:48 pandaJob.out
[2025-11-26 17:52:42] -rw-------. 1 boinc boinc    991530 Nov 26 17:48 agis_schedconf.cvmfs.json
[2025-11-26 17:52:42] -rw-------. 1 boinc boinc   1516240 Nov 26 17:48 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:52:42] drwx------. 5 boinc boinc      4096 Nov 26 17:48 pilot3
[2025-11-26 17:52:42] -rw-r--r--. 1 boinc boinc       523 Nov 26 17:49 boinc_task_state.xml
[2025-11-26 17:52:42] -rw-------. 1 boinc boinc       948 Nov 26 17:49 memory_monitor_summary.json
[2025-11-26 17:52:42] -rw-------. 1 boinc boinc     47093 Nov 26 17:49 log.47556161._006551.job.log.tgz.1
[2025-11-26 17:52:42] -rw-------. 1 boinc boinc        95 Nov 26 17:51 pilot_heartbeat.json
[2025-11-26 17:52:42] -rw-------. 1 boinc boinc     10314 Nov 26 17:51 heartbeat.json
[2025-11-26 17:52:42] -rw-r--r--. 1 boinc boinc        23 Nov 26 17:52 wrapper_checkpoint.txt
[2025-11-26 17:52:42] -rw-------. 1 boinc boinc      4823 Nov 26 17:52 pilotlog.txt
[2025-11-26 17:52:42] -rw-r--r--. 1 boinc boinc      8192 Nov 26 17:52 boinc_mmap_file
[2025-11-26 17:52:42] -rw-------. 1 boinc boinc     92828 Nov 26 17:52 log.47556161._006551.job.log.1
[2025-11-26 17:52:42] -rw-------. 1 boinc boinc       186 Nov 26 17:52 output.list
[2025-11-26 17:52:42] -rw-r--r--. 1 boinc boinc       620 Nov 26 17:52 runtime_log
[2025-11-26 17:52:42] -rw-------. 1 boinc boinc    163840 Nov 26 17:52 result.tar.gz
[2025-11-26 17:52:42] -rw-------. 1 boinc boinc       645 Nov 26 17:52 wZOLDmFgXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqENKDmN3etTn.diag
[2025-11-26 17:52:42] -rw-r--r--. 1 boinc boinc      8634 Nov 26 17:52 runtime_log.err
[2025-11-26 17:52:42] -rw-r--r--. 1 boinc boinc     22375 Nov 26 17:52 stderr.txt
[2025-11-26 17:52:42] No HITS result produced
[2025-11-26 17:52:42]  *** Contents of shared directory: ***
[2025-11-26 17:52:42] total 402036
[2025-11-26 17:52:42] -rw-r--r--. 2 boinc boinc 410904213 Nov 26 17:48 ATLAS.root_0
[2025-11-26 17:52:42] -rw-r--r--. 2 boinc boinc     15847 Nov 26 17:48 start_atlas.sh
[2025-11-26 17:52:42] -rw-r--r--. 2 boinc boinc    590109 Nov 26 17:48 input.tar.gz
[2025-11-26 17:52:42] -rw-------. 1 boinc boinc    163840 Nov 26 17:52 result.tar.gz
17:52:43 (1338509): run_atlas exited; CPU time 47.773850
17:52:43 (1338509): called boinc_finish(0)

</stderr_txt>
]]>

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