Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:31:07 (4075213): wrapper (7.7.26015): starting
20:31:07 (4075213): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 20:31:07] Arguments: --nthreads 8
[2025-11-26 20:31:07] Threads: 8
[2025-11-26 20:31:07] Checking for CVMFS
[2025-11-26 20:31:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 20:31:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 20:31:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 20:31:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 20:31:07] 2.13.3.0 12460 30832 345020 153342 0 605 24317485 32935936 58825 16776704 0 321549226 99.641 298017320 36894 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 20:31:07] CVMFS is ok
[2025-11-26 20:31:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 20:31:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 20:31:07] Further information can be found at the LHC@home message board.
[2025-11-26 20:31:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 20:31:07] Checking for apptainer binary...
[2025-11-26 20:31:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 20:31:07] Running /usr/bin/apptainer --version
[2025-11-26 20:31:08] apptainer version 1.4.4-1.el9
[2025-11-26 20:31:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 20:31:08] c7-6-31.aglt2.org
[2025-11-26 20:31:08] apptainer works
[2025-11-26 20:31:08] Set ATHENA_PROC_NUMBER=8
[2025-11-26 20:31:08] Set ATHENA_CORE_NUMBER=8
[2025-11-26 20:31:08] Starting ATLAS job with PandaID=6898687927
[2025-11-26 20:31:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:20:12 (4075213): BOINC client no longer exists - exiting
23:20:12 (4075213): timer handler: client dead, exiting
00:02:54 (2200130): wrapper (7.7.26015): starting
00:02:54 (2200130): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:02:54] Arguments: --nthreads 9
[2025-11-27 00:02:54] Threads: 9
[2025-11-27 00:02:54] This job has been restarted, cleaning up previous attempt
[2025-11-27 00:02:54] Checking for CVMFS
[2025-11-27 00:02:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:02:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:02:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:02:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:02:55] 2.13.3.0 12460 31044 349144 153347 0 745 27819593 32935937 63720 16776704 0 324447665 99.644 299230960 36877 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:02:55] CVMFS is ok
[2025-11-27 00:02:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:02:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:02:55] Further information can be found at the LHC@home message board.
[2025-11-27 00:02:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:02:55] Checking for apptainer binary...
[2025-11-27 00:02:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:02:55] Running /usr/bin/apptainer --version
[2025-11-27 00:02:55] apptainer version 1.4.4-1.el9
[2025-11-27 00:02:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:02:55] c7-6-31.aglt2.org
[2025-11-27 00:02:55] apptainer works
[2025-11-27 00:02:55] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:02:55] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:02:55] Starting ATLAS job with PandaID=6898687927
[2025-11-27 00:02:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:45:08]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:45:08] 2025-11-28 01:44:05,065 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:45:08] 2025-11-28 01:44:05,068 | INFO     | sum of square deviations: 560201119504.4324
[2025-11-27 20:45:08] 2025-11-28 01:44:05,091 | INFO     | monitor loop #4480: job 0:6898687927 is in state 'finished'
[2025-11-27 20:45:08] 2025-11-28 01:44:05,091 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:45:08] 2025-11-28 01:44:05,120 | INFO     | sum of deviations: 3921302775479.752
[2025-11-27 20:45:08] 2025-11-28 01:44:05,120 | INFO     | mean x: 1764257078.492611
[2025-11-27 20:45:08] 2025-11-28 01:44:05,120 | INFO     | mean y: 3042253.417077176
[2025-11-27 20:45:08] 2025-11-28 01:44:05,120 | INFO     | intersect: -12346426424.319359
[2025-11-27 20:45:08] 2025-11-28 01:44:05,121 | INFO     | chi2: 9.538436085029794
[2025-11-27 20:45:08] 2025-11-28 01:44:05,122 | INFO     | sum of square deviations: 553330650536.9016
[2025-11-27 20:45:08] 2025-11-28 01:44:05,157 | INFO     | sum of deviations: 4331549688662.95
[2025-11-27 20:45:08] 2025-11-28 01:44:05,158 | INFO     | mean x: 1764256926.0090685
[2025-11-27 20:45:08] 2025-11-28 01:44:05,158 | INFO     | mean y: 3051354.2769991755
[2025-11-27 20:45:08] 2025-11-28 01:44:05,158 | INFO     | intersect: -13807798507.665344
[2025-11-27 20:45:08] 2025-11-28 01:44:05,159 | INFO     | chi2: 6.621866855335933
[2025-11-27 20:45:08] 2025-11-28 01:44:05,159 | INFO     | current chi2=6.621866855335933 (change=30.577017067518046 %)
[2025-11-27 20:45:08] 2025-11-28 01:44:05,160 | INFO     | sum of square deviations: 546516527489.255
[2025-11-27 20:45:08] 2025-11-28 01:44:05,186 | INFO     | sum of deviations: 4354065079604.3374
[2025-11-27 20:45:08] 2025-11-28 01:44:05,186 | INFO     | mean x: 1764256773.5248344
[2025-11-27 20:45:08] 2025-11-28 01:44:05,186 | INFO     | mean y: 3051854.805463576
[2025-11-27 20:45:08] 2025-11-28 01:44:05,187 | INFO     | intersect: -14052678251.56525
[2025-11-27 20:45:08] 2025-11-28 01:44:05,187 | INFO     | chi2: 6.495036441375624
[2025-11-27 20:45:08] 2025-11-28 01:44:05,188 | INFO     | current chi2=6.495036441375624 (change=1.9153271536728196 %)
[2025-11-27 20:45:08] 2025-11-28 01:44:05,188 | INFO     | right removable region: 1207
[2025-11-27 20:45:08] 2025-11-28 01:44:05,189 | INFO     | sum of square deviations: 553327684106.9016
[2025-11-27 20:45:08] 2025-11-28 01:44:05,244 | INFO     | sum of deviations: 3404083129582.051
[2025-11-27 20:45:08] 2025-11-28 01:44:05,244 | INFO     | mean x: 1764257231.0090685
[2025-11-27 20:45:08] 2025-11-28 01:44:05,244 | INFO     | mean y: 3053729.087386645
[2025-11-27 20:45:08] 2025-11-28 01:44:05,244 | INFO     | intersect: -10850692520.776428
[2025-11-27 20:45:08] 2025-11-28 01:44:05,245 | INFO     | chi2: 5.344968796724802
[2025-11-27 20:45:08] 2025-11-28 01:44:05,246 | INFO     | current chi2=5.344968796724802 (change=43.96388727588662 %)
[2025-11-27 20:45:08] 2025-11-28 01:44:05,247 | INFO     | sum of square deviations: 546510815881.30334
[2025-11-27 20:45:08] 2025-11-28 01:44:05,311 | INFO     | sum of deviations: 3062545875787.4185
[2025-11-27 20:45:08] 2025-11-28 01:44:05,311 | INFO     | mean x: 1764257383.5240066
[2025-11-27 20:45:08] 2025-11-28 01:44:05,312 | INFO     | mean y: 3061364.4511589403
[2025-11-27 20:45:08] 2025-11-28 01:44:05,312 | INFO     | intersect: -9883511813.475574
[2025-11-27 20:45:08] 2025-11-28 01:44:05,313 | INFO     | chi2: 3.4526790504573857
[2025-11-27 20:45:08] 2025-11-28 01:44:05,313 | INFO     | current chi2=3.4526790504573857 (change=35.40319538304772 %)
[2025-11-27 20:45:08] 2025-11-28 01:44:05,314 | INFO     | sum of square deviations: 539750872405.8616
[2025-11-27 20:45:08] 2025-11-28 01:44:05,339 | INFO     | sum of deviations: 2940628117957.1934
[2025-11-27 20:45:08] 2025-11-28 01:44:05,339 | INFO     | mean x: 1764257536.0307565
[2025-11-27 20:45:08] 2025-11-28 01:44:05,339 | INFO     | mean y: 3064114.4272651705
[2025-11-27 20:45:08] 2025-11-28 01:44:05,340 | INFO     | intersect: -9608824597.572485
[2025-11-27 20:45:08] 2025-11-28 01:44:05,341 | INFO     | chi2: 3.330380068062667
[2025-11-27 20:45:08] 2025-11-28 01:44:05,341 | INFO     | current chi2=3.330380068062667 (change=3.542147434135745 %)
[2025-11-27 20:45:08] 2025-11-28 01:44:05,341 | INFO     | left removable region: 30
[2025-11-27 20:45:08] 2025-11-28 01:44:05,352 | INFO     | sum of square deviations: 505502422037.3479
[2025-11-27 20:45:08] 2025-11-28 01:44:05,375 | INFO     | sum of deviations: 3127014607685.977
[2025-11-27 20:45:08] 2025-11-28 01:44:05,375 | INFO     | mean x: 1764257658.0628717
[2025-11-27 20:45:08] 2025-11-28 01:44:05,376 | INFO     | mean y: 3079514.9056924386
[2025-11-27 20:45:08] 2025-11-28 01:44:05,376 | INFO     | intersect: -10910536776.485392
[2025-11-27 20:45:08] 2025-11-28 01:44:05,377 | INFO     | chi2: 0.14869796733362603
[2025-11-27 20:45:08] 2025-11-28 01:44:05,377 | INFO     | current memory leak: 6.19 B/s (using 1177 data points, chi2=0.15)
[2025-11-27 20:45:08] 2025-11-28 01:44:05,379 | INFO     | could have reported an average CPU frequency of 3380 MHz (44 samples)
[2025-11-27 20:45:08] 2025-11-28 01:44:05,379 | INFO     | ..............................
[2025-11-27 20:45:08] 2025-11-28 01:44:05,379 | INFO     | . Timing measurements:
[2025-11-27 20:45:08] 2025-11-28 01:44:05,379 | INFO     | . get job = 0 s
[2025-11-27 20:45:08] 2025-11-28 01:44:05,379 | INFO     | . initial setup = 3 s
[2025-11-27 20:45:08] 2025-11-28 01:44:05,379 | INFO     | . payload setup = 28 s
[2025-11-27 20:45:08] 2025-11-28 01:44:05,379 | INFO     | . stage-in = 0 s
[2025-11-27 20:45:08] 2025-11-28 01:44:05,379 | INFO     | . payload execution = 74312 s
[2025-11-27 20:45:08] 2025-11-28 01:44:05,379 | INFO     | . stage-out = 4 s
[2025-11-27 20:45:08] 2025-11-28 01:44:05,379 | INFO     | . log creation = 1 s
[2025-11-27 20:45:08] 2025-11-28 01:44:05,379 | INFO     | ..............................
[2025-11-27 20:45:08] 2025-11-28 01:44:05,991 | INFO     | 
[2025-11-27 20:45:08] 2025-11-28 01:44:05,991 | INFO     | job summary report
[2025-11-27 20:45:08] 2025-11-28 01:44:05,991 | INFO     | --------------------------------------------------
[2025-11-27 20:45:08] 2025-11-28 01:44:05,992 | INFO     | PanDA job id: 6898687927
[2025-11-27 20:45:08] 2025-11-28 01:44:05,992 | INFO     | task id: 47556161
[2025-11-27 20:45:08] 2025-11-28 01:44:05,992 | INFO     | errors: (none)
[2025-11-27 20:45:08] 2025-11-28 01:44:05,992 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:45:08] 2025-11-28 01:44:05,992 | INFO     | pilot state: finished 
[2025-11-27 20:45:08] 2025-11-28 01:44:05,992 | INFO     | transexitcode: 0
[2025-11-27 20:45:08] 2025-11-28 01:44:05,992 | INFO     | exeerrorcode: 0
[2025-11-27 20:45:08] 2025-11-28 01:44:05,992 | INFO     | exeerrordiag: 
[2025-11-27 20:45:08] 2025-11-28 01:44:05,992 | INFO     | exitcode: 0
[2025-11-27 20:45:08] 2025-11-28 01:44:05,992 | INFO     | exitmsg: OK
[2025-11-27 20:45:08] 2025-11-28 01:44:05,992 | INFO     | cpuconsumptiontime: 183919 s
[2025-11-27 20:45:08] 2025-11-28 01:44:05,992 | INFO     | nevents: 1000
[2025-11-27 20:45:08] 2025-11-28 01:44:05,992 | INFO     | neventsw: 0
[2025-11-27 20:45:08] 2025-11-28 01:44:05,993 | INFO     | pid: 2269625
[2025-11-27 20:45:08] 2025-11-28 01:44:05,993 | INFO     | pgrp: 2269625
[2025-11-27 20:45:08] 2025-11-28 01:44:05,993 | INFO     | corecount: 9
[2025-11-27 20:45:08] 2025-11-28 01:44:05,993 | INFO     | event service: False
[2025-11-27 20:45:08] 2025-11-28 01:44:05,993 | INFO     | sizes: {0: 2284139, 1: 2284338, 11: 2284338, 19: 2284628, 22: 2284656, 74345: 2344828, 74350: 2353822, 74354: 2353878, 74362: 2354124}
[2025-11-27 20:45:08] 2025-11-28 01:44:05,993 | INFO     | --------------------------------------------------
[2025-11-27 20:45:08] 2025-11-28 01:44:05,993 | INFO     | 
[2025-11-27 20:45:08] 2025-11-28 01:44:05,993 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 20:45:08] 2025-11-28 01:44:06,072 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,073 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,073 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,073 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,073 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,073 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,073 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,073 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,073 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,073 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,073 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,073 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,073 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,074 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,074 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,074 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,074 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,074 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:45:08] 2025-11-28 01:44:06,074 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,074 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:45:08] 2025-11-28 01:44:06,074 | INFO     | job 6898687927 has completed (purged errors)
[2025-11-27 20:45:08] 2025-11-28 01:44:06,074 | INFO     | overall cleanup function is called
[2025-11-27 20:45:08] 2025-11-28 01:44:07,129 | INFO     | --- collectZombieJob: --- 10, [2269625]
[2025-11-27 20:45:08] 2025-11-28 01:44:07,129 | INFO     | zombie collector waiting for pid 2269625
[2025-11-27 20:45:08] 2025-11-28 01:44:07,129 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:45:08] 2025-11-28 01:44:07,129 | INFO     | collected zombie processes
[2025-11-27 20:45:08] 2025-11-28 01:44:07,129 | INFO     | will attempt to kill all subprocesses of pid=2269625
[2025-11-27 20:45:08] 2025-11-28 01:44:08,039 | INFO     | process IDs to be killed: [2269625] (in reverse order)
[2025-11-27 20:45:08] 2025-11-28 01:44:08,283 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:45:08] 2025-11-28 01:44:08,284 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:45:08] 2025-11-28 01:44:08,315 | INFO     | did not find any defunct processes belonging to 2269625
[2025-11-27 20:45:08] 2025-11-28 01:44:08,345 | INFO     | did not find any defunct processes belonging to 2269625
[2025-11-27 20:45:08] 2025-11-28 01:44:08,346 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:45:08] 2025-11-28 01:44:08,346 | INFO     | ready for new job
[2025-11-27 20:45:08] 2025-11-28 01:44:08,347 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:45:08] 2025-11-28 01:44:08,381 | INFO     | ***************************************
[2025-11-27 20:45:08] 2025-11-28 01:44:08,382 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:45:08] 2025-11-28 01:44:08,382 | INFO     | ***************************************
[2025-11-27 20:45:08] 2025-11-28 01:44:08,382 | INFO     | 
[2025-11-27 20:45:08] 2025-11-28 01:44:08,409 | INFO     | architecture information:
[2025-11-27 20:45:08] 2025-11-28 01:44:08,409 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:45:08] 2025-11-28 01:44:08,479 | INFO     | cat /etc/os-release:
[2025-11-27 20:45:08] NAME="CentOS Linux"
[2025-11-27 20:45:08] VERSION="7 (Core)"
[2025-11-27 20:45:08] ID="centos"
[2025-11-27 20:45:08] ID_LIKE="rhel fedora"
[2025-11-27 20:45:08] VERSION_ID="7"
[2025-11-27 20:45:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:45:08] ANSI_COLOR="0;31"
[2025-11-27 20:45:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:45:08] HOME_URL="https://www.centos.org/"
[2025-11-27 20:45:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:45:08] 
[2025-11-27 20:45:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:45:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:45:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:45:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:45:08] 
[2025-11-27 20:45:08] 2025-11-28 01:44:08,479 | INFO     | ***************************************
[2025-11-27 20:45:08] 2025-11-28 01:44:08,982 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 20:45:08] 2025-11-28 01:44:09,017 | INFO     | sufficient remaining disk space (69532123136 B)
[2025-11-27 20:45:08] 2025-11-28 01:44:09,017 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:45:08] 2025-11-28 01:44:09,017 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:45:08] 2025-11-28 01:44:09,017 | INFO     | update_server=False
[2025-11-27 20:45:08] 2025-11-28 01:44:09,017 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:45:08] 2025-11-28 01:44:09,018 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:45:08] 2025-11-28 01:44:09,018 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:45:08] 2025-11-28 01:44:09,018 | INFO     | aborting loop
[2025-11-27 20:45:08] 2025-11-28 01:44:09,309 | INFO     | all data control threads have been joined
[2025-11-27 20:45:08] 2025-11-28 01:44:09,324 | INFO     | all job control threads have been joined
[2025-11-27 20:45:08] 2025-11-28 01:44:09,912 | INFO     | all payload control threads have been joined
[2025-11-27 20:45:08] 2025-11-28 01:44:10,022 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:45:08] 2025-11-28 01:44:10,024 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:45:08] 2025-11-28 01:44:10,162 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:45:08] 2025-11-28 01:44:10,317 | INFO     | [data] control thread has finished
[2025-11-27 20:45:08] 2025-11-28 01:44:10,330 | INFO     | [job] control thread has finished
[2025-11-27 20:45:08] 2025-11-28 01:44:10,404 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:45:08] 2025-11-28 01:44:10,527 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:45:08] 2025-11-28 01:44:10,616 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:45:08] 2025-11-28 01:44:10,819 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:45:08] 2025-11-28 01:44:10,918 | INFO     | [payload] control thread has finished
[2025-11-27 20:45:08] 2025-11-28 01:44:11,026 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:45:08] 2025-11-28 01:44:11,071 | INFO     | [job] validate thread has finished
[2025-11-27 20:45:08] 2025-11-28 01:44:11,276 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:45:08] 2025-11-28 01:44:11,394 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:45:08] 2025-11-28 01:44:11,533 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:45:08] 2025-11-28 01:44:11,534 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:45:08] 2025-11-28 01:44:11,924 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:45:08] 2025-11-28 01:44:15,933 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:45:08] 2025-11-28 01:44:38,870 | INFO     | PID=2227739 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 20:45:08] 2025-11-28 01:44:38,870 | INFO     | .. there are 80 such processes running
[2025-11-27 20:45:08] 2025-11-28 01:44:38,871 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:45:08] 2025-11-28 01:44:38,871 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:45:08] 2025-11-28 01:44:38,871 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:45:08] 2025-11-28 01:45:02,279 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:45:08] 2025-11-28 01:45:02,674 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139630642628416)>', '<ExcThread(monitor, started 139630301136640)>']
[2025-11-27 20:45:08] 2025-11-28 01:45:03,076 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:45:08] 2025-11-28 01:45:03,076 | INFO     | [monitor] control thread has ended
[2025-11-27 20:45:08] 2025-11-28 01:45:07,718 | INFO     | all workflow threads have been joined
[2025-11-27 20:45:08] 2025-11-28 01:45:07,719 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:45:08] 2025-11-28 01:45:07,720 | INFO     | traces error code: 0
[2025-11-27 20:45:08] 2025-11-28 01:45:07,720 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:45:08] 2025-11-28 01:45:07,850 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:45:08] 2025-11-28 01:45:07,854 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:45:08] 2025-11-28 01:45:07,856 [wrapper] pilotpid: 2227739
[2025-11-27 20:45:08] 2025-11-28 01:45:07,862 [wrapper] Pilot exit status: 0
[2025-11-27 20:45:08] 2025-11-28 01:45:07,901 [wrapper] pandaids: 6898687927 6898687927
[2025-11-27 20:45:08] 2025-11-28 01:45:08,119 [wrapper] cleanup supervisor_pilot 1109080 2227740
[2025-11-27 20:45:08] 2025-11-28 01:45:08,128 [wrapper] Test setup, not cleaning
[2025-11-27 20:45:08] 2025-11-28 01:45:08,138 [wrapper] apfmon messages muted
[2025-11-27 20:45:08] 2025-11-28 01:45:08,143 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:45:08] 2025-11-28 01:45:08,148 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:45:08]  *** Error codes and diagnostics ***
[2025-11-27 20:45:08]     "exeErrorCode": 0,
[2025-11-27 20:45:08]     "exeErrorDiag": "",
[2025-11-27 20:45:08]     "pilotErrorCode": 0,
[2025-11-27 20:45:08]     "pilotErrorDiag": "",
[2025-11-27 20:45:08]  *** Listing of results directory ***
[2025-11-27 20:45:08] total 1728448
[2025-11-27 20:45:08] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 20:45:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 20:45:08] -rwx------. 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-11-27 20:45:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-11-27 20:45:08] -rw-r--r--. 1 boincer umatlas       100 Nov 26 20:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:45:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 20:31 run_atlas
[2025-11-27 20:45:08] -rw-r--r--. 1 boincer umatlas       105 Nov 26 20:31 job.xml
[2025-11-27 20:45:08] -rw-r--r--. 3 boincer umatlas 411126753 Nov 26 20:31 EVNT.47483658._002679.pool.root.1
[2025-11-27 20:45:08] -rw-r--r--. 3 boincer umatlas 411126753 Nov 26 20:31 ATLAS.root_0
[2025-11-27 20:45:08] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 20:31 input.tar.gz
[2025-11-27 20:45:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 20:31 start_atlas.sh
[2025-11-27 20:45:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 20:31 shared
[2025-11-27 20:45:08] -rw-r--r--. 1 boincer umatlas         0 Nov 26 20:31 boinc_lockfile
[2025-11-27 20:45:08] -rw-r--r--. 1 boincer umatlas      2784 Nov 27 00:02 pandaJob.out
[2025-11-27 20:45:08] -rw-------. 1 boincer umatlas        57 Nov 27 00:02 setup.sh.local
[2025-11-27 20:45:08] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-27 20:45:08] -rw-r--r--. 1 boincer umatlas       533 Nov 27 20:35 boinc_task_state.xml
[2025-11-27 20:45:08] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 20:38 init_data.xml
[2025-11-27 20:45:08] -rw-------. 1 boincer umatlas 920007608 Nov 27 20:43 HITS.47556161._006611.pool.root.1
[2025-11-27 20:45:08] -rw-------. 1 boincer umatlas      1069 Nov 27 20:43 memory_monitor_summary.json
[2025-11-27 20:45:08] -rw-------. 1 boincer umatlas   1516240 Nov 27 20:43 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:45:08] -rw-------. 1 boincer umatlas   2412668 Nov 27 20:43 log.47556161._006611.job.log.tgz.1
[2025-11-27 20:45:08] -rw-------. 1 boincer umatlas      8617 Nov 27 20:44 heartbeat.json
[2025-11-27 20:45:08] -rw-------. 1 boincer umatlas        97 Nov 27 20:44 pilot_heartbeat.json
[2025-11-27 20:45:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:45 boinc_mmap_file
[2025-11-27 20:45:08] -rw-r--r--. 1 boincer umatlas        29 Nov 27 20:45 wrapper_checkpoint.txt
[2025-11-27 20:45:08] -rw-------. 1 boincer umatlas      4824 Nov 27 20:45 pilotlog.txt
[2025-11-27 20:45:08] -rw-------. 1 boincer umatlas   9456820 Nov 27 20:45 log.47556161._006611.job.log.1
[2025-11-27 20:45:08] -rw-------. 1 boincer umatlas       353 Nov 27 20:45 output.list
[2025-11-27 20:45:08] -rw-r--r--. 1 boincer umatlas       620 Nov 27 20:45 runtime_log
[2025-11-27 20:45:08] -rw-------. 1 boincer umatlas  11888640 Nov 27 20:45 result.tar.gz
[2025-11-27 20:45:08] -rw-------. 1 boincer umatlas       789 Nov 27 20:45 WdiMDmMgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmF7JKDm5ZDkum.diag
[2025-11-27 20:45:08] -rw-r--r--. 1 boincer umatlas      9423 Nov 27 20:45 runtime_log.err
[2025-11-27 20:45:08] -rw-r--r--. 1 boincer umatlas     23478 Nov 27 20:45 stderr.txt
[2025-11-27 20:45:08] HITS file was successfully produced:
[2025-11-27 20:45:08] -rw-------. 1 boincer umatlas 920007608 Nov 27 20:43 shared/HITS.pool.root.1
[2025-11-27 20:45:08]  *** Contents of shared directory: ***
[2025-11-27 20:45:08] total 1312156
[2025-11-27 20:45:08] -rw-r--r--. 3 boincer umatlas 411126753 Nov 26 20:31 ATLAS.root_0
[2025-11-27 20:45:08] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 20:31 input.tar.gz
[2025-11-27 20:45:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 20:31 start_atlas.sh
[2025-11-27 20:45:08] -rw-------. 1 boincer umatlas 920007608 Nov 27 20:43 HITS.pool.root.1
[2025-11-27 20:45:08] -rw-------. 1 boincer umatlas  11888640 Nov 27 20:45 result.tar.gz
20:45:09 (2200130): run_atlas exited; CPU time 186780.473631
20:45:09 (2200130): called boinc_finish(0)

</stderr_txt>
]]>

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