Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:19:01 (3744458): wrapper (7.7.26015): starting
20:19:01 (3744458): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 20:19:01] Arguments: --nthreads 8
[2025-11-26 20:19:01] Threads: 8
[2025-11-26 20:19:01] Checking for CVMFS
[2025-11-26 20:19:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 20:19:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 20:19:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 20:19:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 20:19:02] 2.13.3.0 9456 30821 335552 153342 2 83 22609927 32935933 23959 16776704 0 101066955 99.404 150978360 40560 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 20:19:02] CVMFS is ok
[2025-11-26 20:19:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 20:19:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 20:19:02] Further information can be found at the LHC@home message board.
[2025-11-26 20:19:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 20:19:02] Checking for apptainer binary...
[2025-11-26 20:19:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 20:19:02] Running /usr/bin/apptainer --version
[2025-11-26 20:19:02] apptainer version 1.4.4-1.el9
[2025-11-26 20:19:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 20:19:02] c6-5-7-2.aglt2.org
[2025-11-26 20:19:02] apptainer works
[2025-11-26 20:19:02] Set ATHENA_PROC_NUMBER=8
[2025-11-26 20:19:02] Set ATHENA_CORE_NUMBER=8
[2025-11-26 20:19:02] Starting ATLAS job with PandaID=6898489578
[2025-11-26 20:19:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:32:57]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:32:57] 2025-11-27 21:32:09,957 | INFO     | monitor loop #4447: job 0:6898489578 is in state 'finished'
[2025-11-27 16:32:57] 2025-11-27 21:32:09,957 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:32:57] 2025-11-27 21:32:11,078 | INFO     | time since job start (72773s) is within the limit (172800.0s)
[2025-11-27 16:32:57] 2025-11-27 21:32:12,478 | INFO     | monitor loop #4448: job 0:6898489578 is in state 'finished'
[2025-11-27 16:32:57] 2025-11-27 21:32:12,478 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:32:57] 2025-11-27 21:32:13,089 | INFO     | time since job start (72775s) is within the limit (172800.0s)
[2025-11-27 16:32:57] 2025-11-27 21:32:14,983 | INFO     | monitor loop #4449: job 0:6898489578 is in state 'finished'
[2025-11-27 16:32:57] 2025-11-27 21:32:14,983 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:32:57] 2025-11-27 21:32:15,095 | INFO     | time since job start (72777s) is within the limit (172800.0s)
[2025-11-27 16:32:57] 2025-11-27 21:32:17,124 | INFO     | time since job start (72779s) is within the limit (172800.0s)
[2025-11-27 16:32:57] 2025-11-27 21:32:17,505 | INFO     | monitor loop #4450: job 0:6898489578 is in state 'finished'
[2025-11-27 16:32:57] 2025-11-27 21:32:17,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:32:57] 2025-11-27 21:32:19,141 | INFO     | time since job start (72781s) is within the limit (172800.0s)
[2025-11-27 16:32:57] 2025-11-27 21:32:20,010 | INFO     | monitor loop #4451: job 0:6898489578 is in state 'finished'
[2025-11-27 16:32:57] 2025-11-27 21:32:20,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:32:57] 2025-11-27 21:32:20,509 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 16:32:57] 2025-11-27 21:32:20,546 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2894.6095178571436
[2025-11-27 16:32:57] 2025-11-27 21:32:20,603 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6898489578/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:32:57] 2025-11-27 21:32:20,604 | INFO     | extracted standard info from prmon json
[2025-11-27 16:32:57] 2025-11-27 21:32:20,604 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:32:57] 2025-11-27 21:32:20,604 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:32:57] 2025-11-27 21:32:20,661 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:32:57] 2025-11-27 21:32:20,664 | INFO     | sum of square deviations: 525209577684.5936
[2025-11-27 16:32:57] 2025-11-27 21:32:20,774 | INFO     | sum of deviations: 2787150827059.9165
[2025-11-27 16:32:57] 2025-11-27 21:32:20,774 | INFO     | mean x: 1764242724.6459732
[2025-11-27 16:32:57] 2025-11-27 21:32:20,774 | INFO     | mean y: 2951413.578020134
[2025-11-27 16:32:57] 2025-11-27 21:32:20,775 | INFO     | intersect: -9359426536.209518
[2025-11-27 16:32:57] 2025-11-27 21:32:20,776 | INFO     | chi2: 12.632925906397517
[2025-11-27 16:32:57] 2025-11-27 21:32:20,782 | INFO     | sum of square deviations: 518630338981.6387
[2025-11-27 16:32:57] 2025-11-27 21:32:20,837 | INFO     | sum of deviations: 3184685074512.253
[2025-11-27 16:32:57] 2025-11-27 21:32:20,837 | INFO     | mean x: 1764242572.1676495
[2025-11-27 16:32:57] 2025-11-27 21:32:20,837 | INFO     | mean y: 2960624.9283909015
[2025-11-27 16:32:57] 2025-11-27 21:32:20,837 | INFO     | intersect: -10830491576.17845
[2025-11-27 16:32:57] 2025-11-27 21:32:20,840 | INFO     | chi2: 9.515468609546488
[2025-11-27 16:32:57] 2025-11-27 21:32:20,840 | INFO     | current chi2=9.515468609546488 (change=24.677238827723183 %)
[2025-11-27 16:32:57] 2025-11-27 21:32:20,840 | INFO     | right removable region: 1186
[2025-11-27 16:32:57] 2025-11-27 21:32:20,842 | INFO     | sum of square deviations: 518626669718.9739
[2025-11-27 16:32:57] 2025-11-27 21:32:21,024 | INFO     | sum of deviations: 2446414839739.547
[2025-11-27 16:32:57] 2025-11-27 21:32:21,028 | INFO     | mean x: 1764242877.1668072
[2025-11-27 16:32:57] 2025-11-27 21:32:21,029 | INFO     | mean y: 2959299.754844145
[2025-11-27 16:32:57] 2025-11-27 21:32:21,029 | INFO     | intersect: -8319154096.273175
[2025-11-27 16:32:57] 2025-11-27 21:32:21,030 | INFO     | chi2: 10.370870468983133
[2025-11-27 16:32:57] 2025-11-27 21:32:21,030 | INFO     | current chi2=10.370870468983133 (change=17.906029483390245 %)
[2025-11-27 16:32:57] 2025-11-27 21:32:21,031 | INFO     | left removable region: 10
[2025-11-27 16:32:57] 2025-11-27 21:32:21,032 | INFO     | sum of square deviations: 504343694053.8326
[2025-11-27 16:32:57] 2025-11-27 21:32:21,104 | INFO     | sum of deviations: 2844392368176.3574
[2025-11-27 16:32:57] 2025-11-27 21:32:21,104 | INFO     | mean x: 1764242846.702381
[2025-11-27 16:32:57] 2025-11-27 21:32:21,105 | INFO     | mean y: 2972084.586734694
[2025-11-27 16:32:57] 2025-11-27 21:32:21,105 | INFO     | intersect: -9946986540.719982
[2025-11-27 16:32:57] 2025-11-27 21:32:21,110 | INFO     | chi2: 6.663468136367378
[2025-11-27 16:32:57] 2025-11-27 21:32:21,111 | INFO     | current memory leak: 5.64 B/s (using 1176 data points, chi2=6.66)
[2025-11-27 16:32:57] 2025-11-27 21:32:21,112 | INFO     | could have reported an average CPU frequency of 2923 MHz (43 samples)
[2025-11-27 16:32:57] 2025-11-27 21:32:21,112 | INFO     | ..............................
[2025-11-27 16:32:57] 2025-11-27 21:32:21,112 | INFO     | . Timing measurements:
[2025-11-27 16:32:57] 2025-11-27 21:32:21,112 | INFO     | . get job = 0 s
[2025-11-27 16:32:57] 2025-11-27 21:32:21,112 | INFO     | . initial setup = 2 s
[2025-11-27 16:32:57] 2025-11-27 21:32:21,112 | INFO     | . payload setup = 10 s
[2025-11-27 16:32:57] 2025-11-27 21:32:21,112 | INFO     | . stage-in = 0 s
[2025-11-27 16:32:57] 2025-11-27 21:32:21,112 | INFO     | . payload execution = 72705 s
[2025-11-27 16:32:57] 2025-11-27 21:32:21,112 | INFO     | . stage-out = 7 s
[2025-11-27 16:32:57] 2025-11-27 21:32:21,112 | INFO     | . log creation = 2 s
[2025-11-27 16:32:57] 2025-11-27 21:32:21,113 | INFO     | ..............................
[2025-11-27 16:32:57] 2025-11-27 21:32:21,766 | INFO     | 
[2025-11-27 16:32:57] 2025-11-27 21:32:21,766 | INFO     | job summary report
[2025-11-27 16:32:57] 2025-11-27 21:32:21,766 | INFO     | --------------------------------------------------
[2025-11-27 16:32:57] 2025-11-27 21:32:21,767 | INFO     | PanDA job id: 6898489578
[2025-11-27 16:32:57] 2025-11-27 21:32:21,767 | INFO     | task id: 47556161
[2025-11-27 16:32:57] 2025-11-27 21:32:21,767 | INFO     | errors: (none)
[2025-11-27 16:32:57] 2025-11-27 21:32:21,767 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:32:57] 2025-11-27 21:32:21,767 | INFO     | pilot state: finished 
[2025-11-27 16:32:57] 2025-11-27 21:32:21,767 | INFO     | transexitcode: 0
[2025-11-27 16:32:57] 2025-11-27 21:32:21,767 | INFO     | exeerrorcode: 0
[2025-11-27 16:32:57] 2025-11-27 21:32:21,767 | INFO     | exeerrordiag: 
[2025-11-27 16:32:57] 2025-11-27 21:32:21,767 | INFO     | exitcode: 0
[2025-11-27 16:32:57] 2025-11-27 21:32:21,767 | INFO     | exitmsg: OK
[2025-11-27 16:32:57] 2025-11-27 21:32:21,767 | INFO     | cpuconsumptiontime: 225710 s
[2025-11-27 16:32:57] 2025-11-27 21:32:21,767 | INFO     | nevents: 1000
[2025-11-27 16:32:57] 2025-11-27 21:32:21,768 | INFO     | neventsw: 0
[2025-11-27 16:32:57] 2025-11-27 21:32:21,768 | INFO     | pid: 3756354
[2025-11-27 16:32:57] 2025-11-27 21:32:21,768 | INFO     | pgrp: 3756354
[2025-11-27 16:32:57] 2025-11-27 21:32:21,768 | INFO     | corecount: 8
[2025-11-27 16:32:57] 2025-11-27 21:32:21,768 | INFO     | event service: False
[2025-11-27 16:32:57] 2025-11-27 21:32:21,768 | INFO     | sizes: {0: 2284310, 1: 2284310, 8: 2284600, 11: 2284628, 72720: 2343650, 72728: 2352828, 72765: 2353018}
[2025-11-27 16:32:57] 2025-11-27 21:32:21,768 | INFO     | --------------------------------------------------
[2025-11-27 16:32:57] 2025-11-27 21:32:21,768 | INFO     | 
[2025-11-27 16:32:57] 2025-11-27 21:32:21,768 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 16:32:57] 2025-11-27 21:32:22,059 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,060 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,060 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,060 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,081 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,081 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,081 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,081 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,081 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,081 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,081 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,081 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,082 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,082 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,082 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,082 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,082 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,082 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:32:57] 2025-11-27 21:32:22,082 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,082 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:32:57] 2025-11-27 21:32:22,082 | INFO     | job 6898489578 has completed (purged errors)
[2025-11-27 16:32:57] 2025-11-27 21:32:22,082 | INFO     | overall cleanup function is called
[2025-11-27 16:32:57] 2025-11-27 21:32:22,320 | INFO     | PID=3749115 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:32:57] 2025-11-27 21:32:22,320 | INFO     | .. there are 32 such processes running
[2025-11-27 16:32:57] 2025-11-27 21:32:23,100 | INFO     | --- collectZombieJob: --- 10, [3756354]
[2025-11-27 16:32:57] 2025-11-27 21:32:23,101 | INFO     | zombie collector waiting for pid 3756354
[2025-11-27 16:32:57] 2025-11-27 21:32:23,101 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:32:57] 2025-11-27 21:32:23,101 | INFO     | collected zombie processes
[2025-11-27 16:32:57] 2025-11-27 21:32:23,101 | INFO     | will attempt to kill all subprocesses of pid=3756354
[2025-11-27 16:32:57] 2025-11-27 21:32:24,331 | INFO     | process IDs to be killed: [3756354] (in reverse order)
[2025-11-27 16:32:57] 2025-11-27 21:32:24,723 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:32:57] 2025-11-27 21:32:24,723 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:32:57] 2025-11-27 21:32:24,764 | INFO     | did not find any defunct processes belonging to 3756354
[2025-11-27 16:32:57] 2025-11-27 21:32:24,889 | INFO     | did not find any defunct processes belonging to 3756354
[2025-11-27 16:32:57] 2025-11-27 21:32:24,903 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:32:57] 2025-11-27 21:32:24,904 | INFO     | ready for new job
[2025-11-27 16:32:57] 2025-11-27 21:32:24,904 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:32:57] 2025-11-27 21:32:24,930 | INFO     | ***************************************
[2025-11-27 16:32:57] 2025-11-27 21:32:24,930 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:32:57] 2025-11-27 21:32:24,930 | INFO     | ***************************************
[2025-11-27 16:32:57] 2025-11-27 21:32:24,930 | INFO     | 
[2025-11-27 16:32:57] 2025-11-27 21:32:24,937 | INFO     | architecture information:
[2025-11-27 16:32:57] 2025-11-27 21:32:24,939 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:32:57] 2025-11-27 21:32:25,010 | INFO     | cat /etc/os-release:
[2025-11-27 16:32:57] NAME="CentOS Linux"
[2025-11-27 16:32:57] VERSION="7 (Core)"
[2025-11-27 16:32:57] ID="centos"
[2025-11-27 16:32:57] ID_LIKE="rhel fedora"
[2025-11-27 16:32:57] VERSION_ID="7"
[2025-11-27 16:32:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:32:57] ANSI_COLOR="0;31"
[2025-11-27 16:32:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:32:57] HOME_URL="https://www.centos.org/"
[2025-11-27 16:32:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:32:57] 
[2025-11-27 16:32:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:32:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:32:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:32:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:32:57] 
[2025-11-27 16:32:57] 2025-11-27 21:32:25,010 | INFO     | ***************************************
[2025-11-27 16:32:57] 2025-11-27 21:32:25,513 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 16:32:57] 2025-11-27 21:32:25,782 | INFO     | sufficient remaining disk space (68340940800 B)
[2025-11-27 16:32:57] 2025-11-27 21:32:25,782 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:32:57] 2025-11-27 21:32:25,782 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:32:57] 2025-11-27 21:32:25,782 | INFO     | update_server=False
[2025-11-27 16:32:57] 2025-11-27 21:32:25,782 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:32:57] 2025-11-27 21:32:25,797 | INFO     | all payload control threads have been joined
[2025-11-27 16:32:57] 2025-11-27 21:32:26,099 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:32:57] 2025-11-27 21:32:26,100 | INFO     | aborting loop
[2025-11-27 16:32:57] 2025-11-27 21:32:26,399 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:32:57] 2025-11-27 21:32:26,438 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:32:57] 2025-11-27 21:32:26,622 | INFO     | all job control threads have been joined
[2025-11-27 16:32:57] 2025-11-27 21:32:26,791 | INFO     | all data control threads have been joined
[2025-11-27 16:32:57] 2025-11-27 21:32:26,803 | INFO     | [payload] control thread has finished
[2025-11-27 16:32:57] 2025-11-27 21:32:26,818 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:32:57] 2025-11-27 21:32:26,821 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:32:57] 2025-11-27 21:32:27,105 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:32:57] 2025-11-27 21:32:27,105 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:32:57] 2025-11-27 21:32:27,381 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:32:57] 2025-11-27 21:32:27,382 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:32:57] 2025-11-27 21:32:27,391 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:32:57] 2025-11-27 21:32:27,444 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:32:57] 2025-11-27 21:32:27,630 | INFO     | [job] control thread has finished
[2025-11-27 16:32:57] 2025-11-27 21:32:27,797 | INFO     | [data] control thread has finished
[2025-11-27 16:32:57] 2025-11-27 21:32:27,966 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:32:57] 2025-11-27 21:32:28,053 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:32:57] 2025-11-27 21:32:28,054 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:32:57] 2025-11-27 21:32:28,151 | INFO     | [job] validate thread has finished
[2025-11-27 16:32:57] 2025-11-27 21:32:28,193 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:32:57] 2025-11-27 21:32:29,138 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:32:57] 2025-11-27 21:32:30,417 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:32:57] 2025-11-27 21:32:32,342 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140234450097984)>', '<ExcThread(monitor, started 140233794365184)>']
[2025-11-27 16:32:57] 2025-11-27 21:32:37,368 | INFO     | all workflow threads have been joined
[2025-11-27 16:32:57] 2025-11-27 21:32:37,368 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:32:57] 2025-11-27 21:32:37,369 | INFO     | traces error code: 0
[2025-11-27 16:32:57] 2025-11-27 21:32:37,369 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:32:57] 2025-11-27 21:32:55,977 | INFO     | PID=3749115 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:32:57] 2025-11-27 21:32:55,978 | INFO     | .. there are 32 such processes running
[2025-11-27 16:32:57] 2025-11-27 21:32:55,978 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:32:57] 2025-11-27 21:32:55,978 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:32:57] 2025-11-27 21:32:55,978 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:32:57] 2025-11-27 21:32:55,978 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:32:57] 2025-11-27 21:32:55,978 | INFO     | [monitor] control thread has ended
[2025-11-27 16:32:57] 2025-11-27 21:32:56,476 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:32:57] 2025-11-27 21:32:56,507 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:32:57] 2025-11-27 21:32:56,584 [wrapper] pilotpid: 3749115
[2025-11-27 16:32:57] 2025-11-27 21:32:56,615 [wrapper] Pilot exit status: 0
[2025-11-27 16:32:57] 2025-11-27 21:32:56,634 [wrapper] pandaids: 6898489578
[2025-11-27 16:32:57] 2025-11-27 21:32:56,745 [wrapper] cleanup supervisor_pilot 3374514 3749116
[2025-11-27 16:32:57] 2025-11-27 21:32:56,832 [wrapper] Test setup, not cleaning
[2025-11-27 16:32:57] 2025-11-27 21:32:56,845 [wrapper] apfmon messages muted
[2025-11-27 16:32:57] 2025-11-27 21:32:56,860 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:32:57] 2025-11-27 21:32:56,905 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:32:57]  *** Error codes and diagnostics ***
[2025-11-27 16:32:57]     "exeErrorCode": 0,
[2025-11-27 16:32:57]     "exeErrorDiag": "",
[2025-11-27 16:32:57]     "pilotErrorCode": 0,
[2025-11-27 16:32:57]     "pilotErrorDiag": "",
[2025-11-27 16:32:57]  *** Listing of results directory ***
[2025-11-27 16:32:57] total 1313384
[2025-11-27 16:32:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 16:32:57] -rwx------. 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-11-27 16:32:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-11-27 16:32:57] -rw-r--r--. 1 boincer umatlas       100 Nov 26 20:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:32:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 20:19 run_atlas
[2025-11-27 16:32:57] -rw-r--r--. 1 boincer umatlas       105 Nov 26 20:19 job.xml
[2025-11-27 16:32:57] -rw-r--r--. 2 boincer umatlas 408947109 Nov 26 20:19 EVNT.47483658._002650.pool.root.1
[2025-11-27 16:32:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 20:19 start_atlas.sh
[2025-11-27 16:32:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 20:19 shared
[2025-11-27 16:32:57] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 20:19 input.tar.gz
[2025-11-27 16:32:57] -rw-r--r--. 1 boincer umatlas         0 Nov 26 20:19 boinc_lockfile
[2025-11-27 16:32:57] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 20:19 pandaJob.out
[2025-11-27 16:32:57] -rw-------. 1 boincer umatlas        57 Nov 26 20:19 setup.sh.local
[2025-11-27 16:32:57] -rw-------. 1 boincer umatlas    991530 Nov 26 20:19 agis_schedconf.cvmfs.json
[2025-11-27 16:32:57] drwx------. 5 boincer umatlas      4096 Nov 26 20:19 pilot3
[2025-11-27 16:32:57] -rw-r--r--. 1 boincer umatlas       533 Nov 27 16:09 boinc_task_state.xml
[2025-11-27 16:32:57] -rw-------. 1 boincer umatlas 908955731 Nov 27 16:30 HITS.47556161._006321.pool.root.1
[2025-11-27 16:32:57] -rw-r--r--. 1 boincer umatlas      6843 Nov 27 16:30 init_data.xml
[2025-11-27 16:32:57] -rw-------. 1 boincer umatlas      1058 Nov 27 16:31 memory_monitor_summary.json
[2025-11-27 16:32:57] -rw-------. 1 boincer umatlas   1516240 Nov 27 16:31 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:32:57] -rw-------. 1 boincer umatlas   2264681 Nov 27 16:31 log.47556161._006321.job.log.tgz.1
[2025-11-27 16:32:57] -rw-------. 1 boincer umatlas      8613 Nov 27 16:32 heartbeat.json
[2025-11-27 16:32:57] -rw-------. 1 boincer umatlas        95 Nov 27 16:32 pilot_heartbeat.json
[2025-11-27 16:32:57] -rw-------. 1 boincer umatlas       823 Nov 27 16:32 pilotlog.txt
[2025-11-27 16:32:57] -rw-------. 1 boincer umatlas   9276407 Nov 27 16:32 log.47556161._006321.job.log.1
[2025-11-27 16:32:57] -rw-------. 1 boincer umatlas       353 Nov 27 16:32 output.list
[2025-11-27 16:32:57] -rw-r--r--. 1 boincer umatlas       620 Nov 27 16:32 runtime_log
[2025-11-27 16:32:57] -rw-------. 1 boincer umatlas  11560960 Nov 27 16:32 result.tar.gz
[2025-11-27 16:32:57] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 16:32 runtime_log.err
[2025-11-27 16:32:57] -rw-------. 1 boincer umatlas       660 Nov 27 16:32 Fd3LDmBgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmh5JKDmaNzPHm.diag
[2025-11-27 16:32:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:32 boinc_mmap_file
[2025-11-27 16:32:57] -rw-r--r--. 1 boincer umatlas        29 Nov 27 16:32 wrapper_checkpoint.txt
[2025-11-27 16:32:57] -rw-r--r--. 1 boincer umatlas     21834 Nov 27 16:32 stderr.txt
[2025-11-27 16:32:57] HITS file was successfully produced:
[2025-11-27 16:32:57] -rw-------. 1 boincer umatlas 908955731 Nov 27 16:30 shared/HITS.pool.root.1
[2025-11-27 16:32:57]  *** Contents of shared directory: ***
[2025-11-27 16:32:57] total 1298916
[2025-11-27 16:32:57] -rw-r--r--. 2 boincer umatlas 408947109 Nov 26 20:19 ATLAS.root_0
[2025-11-27 16:32:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 20:19 start_atlas.sh
[2025-11-27 16:32:57] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 20:19 input.tar.gz
[2025-11-27 16:32:57] -rw-------. 1 boincer umatlas 908955731 Nov 27 16:30 HITS.pool.root.1
[2025-11-27 16:32:57] -rw-------. 1 boincer umatlas  11560960 Nov 27 16:32 result.tar.gz
16:32:59 (3744458): run_atlas exited; CPU time 227700.864984
16:32:59 (3744458): called boinc_finish(0)

</stderr_txt>
]]>

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