Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:31:12 (13608): wrapper (7.7.26015): starting
04:31:12 (13608): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 04:31:12] Arguments: --nthreads 8
[2025-11-29 04:31:12] Threads: 8
[2025-11-29 04:31:12] Checking for CVMFS
[2025-11-29 04:31:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 04:31:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 04:31:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 04:31:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 04:31:14] 2.11.2.0 1477 194269 135244 153428 1 84 24578363 25165825 1628 130560 13 66329345 99.877 33718880 2318 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-29 04:31:14] CVMFS is ok
[2025-11-29 04:31:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 04:31:14] Checking for apptainer binary...
[2025-11-29 04:31:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 04:31:14] Running /usr/bin/apptainer --version
[2025-11-29 04:31:14] apptainer version 1.3.2-1.el7
[2025-11-29 04:31:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 04:31:18] cg-vwn317.simple-grid.lan
[2025-11-29 04:31:18] apptainer works
[2025-11-29 04:31:18] Set ATHENA_PROC_NUMBER=8
[2025-11-29 04:31:18] Set ATHENA_CORE_NUMBER=8
[2025-11-29 04:31:18] Starting ATLAS job with PandaID=6898039688
[2025-11-29 04:31:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 04:14:22]  *** The last 200 lines of the pilot log: ***
[2025-11-30 04:14:22] 2025-11-30 03:13:21,094 | INFO     | time since job start (85118s) is within the limit (172800.0s)
[2025-11-30 04:14:22] 2025-11-30 03:13:21,185 | INFO     | monitor loop #5740: job 0:6898039688 is in state 'finished'
[2025-11-30 04:14:22] 2025-11-30 03:13:21,185 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 04:14:22] 2025-11-30 03:13:23,106 | INFO     | time since job start (85120s) is within the limit (172800.0s)
[2025-11-30 04:14:22] 2025-11-30 03:13:23,698 | INFO     | monitor loop #5741: job 0:6898039688 is in state 'finished'
[2025-11-30 04:14:22] 2025-11-30 03:13:23,698 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 04:14:22] 2025-11-30 03:13:25,118 | INFO     | time since job start (85122s) is within the limit (172800.0s)
[2025-11-30 04:14:22] 2025-11-30 03:13:26,203 | INFO     | monitor loop #5742: job 0:6898039688 is in state 'finished'
[2025-11-30 04:14:22] 2025-11-30 03:13:26,203 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 04:14:22] 2025-11-30 03:13:27,126 | INFO     | time since job start (85124s) is within the limit (172800.0s)
[2025-11-30 04:14:22] 2025-11-30 03:13:28,344 | INFO     | PID=17429 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 04:14:22] 2025-11-30 03:13:28,344 | INFO     | .. there are 9 such processes running
[2025-11-30 04:14:22] 2025-11-30 03:13:28,708 | INFO     | monitor loop #5743: job 0:6898039688 is in state 'finished'
[2025-11-30 04:14:22] 2025-11-30 03:13:28,708 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 04:14:22] 2025-11-30 03:13:29,346 | INFO     | time since job start (85126s) is within the limit (172800.0s)
[2025-11-30 04:14:22] 2025-11-30 03:13:30,323 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 04:14:22] 2025-11-30 03:13:30,326 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-30 04:14:22] 2025-11-30 03:13:30,328 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6898039688/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 04:14:22] 2025-11-30 03:13:30,329 | INFO     | extracted standard info from prmon json
[2025-11-30 04:14:22] 2025-11-30 03:13:30,329 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 04:14:22] 2025-11-30 03:13:30,329 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 04:14:22] 2025-11-30 03:13:30,362 | INFO     | fitting pss+swap vs Time
[2025-11-30 04:14:22] 2025-11-30 03:13:30,364 | INFO     | sum of square deviations: 825593968185.1165
[2025-11-30 04:14:22] 2025-11-30 03:13:30,453 | INFO     | sum of deviations: 2802203703090.0195
[2025-11-30 04:14:22] 2025-11-30 03:13:30,453 | INFO     | mean x: 1764430034.605339
[2025-11-30 04:14:22] 2025-11-30 03:13:30,453 | INFO     | mean y: 2838611.404040404
[2025-11-30 04:14:22] 2025-11-30 03:13:30,453 | INFO     | intersect: -5985931374.020214
[2025-11-30 04:14:22] 2025-11-30 03:13:30,455 | INFO     | chi2: 21.328282231876564
[2025-11-30 04:14:22] 2025-11-30 03:13:30,457 | INFO     | sum of square deviations: 816691598746.4893
[2025-11-30 04:14:22] 2025-11-30 03:13:30,522 | INFO     | sum of deviations: 3272837606505.5586
[2025-11-30 04:14:22] 2025-11-30 03:13:30,523 | INFO     | mean x: 1764429882.1093411
[2025-11-30 04:14:22] 2025-11-30 03:13:30,523 | INFO     | mean y: 2846672.320782042
[2025-11-30 04:14:22] 2025-11-30 03:13:30,523 | INFO     | intersect: -7067989468.363156
[2025-11-30 04:14:22] 2025-11-30 03:13:30,525 | INFO     | chi2: 17.945794569796703
[2025-11-30 04:14:22] 2025-11-30 03:13:30,525 | INFO     | current chi2=17.945794569796703 (change=15.859165896747667 %)
[2025-11-30 04:14:22] 2025-11-30 03:13:30,525 | INFO     | right removable region: 1380
[2025-11-30 04:14:22] 2025-11-30 03:13:30,527 | INFO     | sum of square deviations: 816690664226.4899
[2025-11-30 04:14:22] 2025-11-30 03:13:30,593 | INFO     | sum of deviations: 2219467840821.522
[2025-11-30 04:14:22] 2025-11-30 03:13:30,593 | INFO     | mean x: 1764430187.1093411
[2025-11-30 04:14:22] 2025-11-30 03:13:30,593 | INFO     | mean y: 2848592.48660391
[2025-11-30 04:14:22] 2025-11-30 03:13:30,593 | INFO     | intersect: -4792230167.686228
[2025-11-30 04:14:22] 2025-11-30 03:13:30,595 | INFO     | chi2: 16.649648120428658
[2025-11-30 04:14:22] 2025-11-30 03:13:30,595 | INFO     | current chi2=16.649648120428658 (change=21.936291261447067 %)
[2025-11-30 04:14:22] 2025-11-30 03:13:30,596 | INFO     | left removable region: 10
[2025-11-30 04:14:22] 2025-11-30 03:13:30,597 | INFO     | sum of square deviations: 797330292337.3442
[2025-11-30 04:14:22] 2025-11-30 03:13:30,668 | INFO     | sum of deviations: 2334056033421.4746
[2025-11-30 04:14:22] 2025-11-30 03:13:30,669 | INFO     | mean x: 1764430156.6182482
[2025-11-30 04:14:22] 2025-11-30 03:13:30,669 | INFO     | mean y: 2866660.5649635037
[2025-11-30 04:14:22] 2025-11-30 03:13:30,669 | INFO     | intersect: -5162218489.446129
[2025-11-30 04:14:22] 2025-11-30 03:13:30,671 | INFO     | chi2: 9.454462914180036
[2025-11-30 04:14:22] 2025-11-30 03:13:30,671 | INFO     | current memory leak: 2.93 B/s (using 1370 data points, chi2=9.45)
[2025-11-30 04:14:22] 2025-11-30 03:13:30,672 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-30 04:14:22] 2025-11-30 03:13:30,673 | INFO     | ..............................
[2025-11-30 04:14:22] 2025-11-30 03:13:30,673 | INFO     | . Timing measurements:
[2025-11-30 04:14:22] 2025-11-30 03:13:30,673 | INFO     | . get job = 0 s
[2025-11-30 04:14:22] 2025-11-30 03:13:30,673 | INFO     | . initial setup = 4 s
[2025-11-30 04:14:22] 2025-11-30 03:13:30,673 | INFO     | . payload setup = 164 s
[2025-11-30 04:14:22] 2025-11-30 03:13:30,673 | INFO     | . stage-in = 0 s
[2025-11-30 04:14:22] 2025-11-30 03:13:30,673 | INFO     | . payload execution = 84661 s
[2025-11-30 04:14:22] 2025-11-30 03:13:30,673 | INFO     | . stage-out = 6 s
[2025-11-30 04:14:22] 2025-11-30 03:13:30,673 | INFO     | . log creation = 2 s
[2025-11-30 04:14:22] 2025-11-30 03:13:30,673 | INFO     | ..............................
[2025-11-30 04:14:22] 2025-11-30 03:13:30,885 | INFO     | 
[2025-11-30 04:14:22] 2025-11-30 03:13:30,885 | INFO     | job summary report
[2025-11-30 04:14:22] 2025-11-30 03:13:30,885 | INFO     | --------------------------------------------------
[2025-11-30 04:14:22] 2025-11-30 03:13:30,885 | INFO     | PanDA job id: 6898039688
[2025-11-30 04:14:22] 2025-11-30 03:13:30,886 | INFO     | task id: 47556161
[2025-11-30 04:14:22] 2025-11-30 03:13:30,886 | INFO     | errors: (none)
[2025-11-30 04:14:22] 2025-11-30 03:13:30,886 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 04:14:22] 2025-11-30 03:13:30,886 | INFO     | pilot state: finished 
[2025-11-30 04:14:22] 2025-11-30 03:13:30,886 | INFO     | transexitcode: 0
[2025-11-30 04:14:22] 2025-11-30 03:13:30,886 | INFO     | exeerrorcode: 0
[2025-11-30 04:14:22] 2025-11-30 03:13:30,886 | INFO     | exeerrordiag: 
[2025-11-30 04:14:22] 2025-11-30 03:13:30,886 | INFO     | exitcode: 0
[2025-11-30 04:14:22] 2025-11-30 03:13:30,886 | INFO     | exitmsg: OK
[2025-11-30 04:14:22] 2025-11-30 03:13:30,887 | INFO     | cpuconsumptiontime: 318299 s
[2025-11-30 04:14:22] 2025-11-30 03:13:30,887 | INFO     | nevents: 1000
[2025-11-30 04:14:22] 2025-11-30 03:13:30,887 | INFO     | neventsw: 0
[2025-11-30 04:14:22] 2025-11-30 03:13:30,887 | INFO     | pid: 23962
[2025-11-30 04:14:22] 2025-11-30 03:13:30,887 | INFO     | pgrp: 23962
[2025-11-30 04:14:22] 2025-11-30 03:13:30,887 | INFO     | corecount: 8
[2025-11-30 04:14:22] 2025-11-30 03:13:30,887 | INFO     | event service: False
[2025-11-30 04:14:22] 2025-11-30 03:13:30,887 | INFO     | sizes: {0: 2283436, 1: 2284122, 2: 2284321, 13: 2284321, 23: 2284377, 34: 2284405, 45: 2284561, 56: 2284589, 66: 2284617, 77: 2284645, 88: 2284701, 97: 2285271, 99
[2025-11-30 04:14:22] 2025-11-30 03:13:30,887 | INFO     | --------------------------------------------------
[2025-11-30 04:14:22] 2025-11-30 03:13:30,888 | INFO     | 
[2025-11-30 04:14:22] 2025-11-30 03:13:30,888 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-11-30 04:14:22] 2025-11-30 03:13:31,382 | INFO     | time since job start (85128s) is within the limit (172800.0s)
[2025-11-30 04:14:22] 2025-11-30 03:13:31,480 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,480 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,480 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,480 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,480 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,480 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,480 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,481 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,481 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,481 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,481 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,481 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,481 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,481 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,481 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,481 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,481 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,481 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 04:14:22] 2025-11-30 03:13:31,482 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,482 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 04:14:22] 2025-11-30 03:13:31,482 | INFO     | job 6898039688 has completed (purged errors)
[2025-11-30 04:14:22] 2025-11-30 03:13:31,482 | INFO     | overall cleanup function is called
[2025-11-30 04:14:22] 2025-11-30 03:13:32,498 | INFO     | --- collectZombieJob: --- 10, [23962]
[2025-11-30 04:14:22] 2025-11-30 03:13:32,498 | INFO     | zombie collector waiting for pid 23962
[2025-11-30 04:14:22] 2025-11-30 03:13:32,498 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 04:14:22] 2025-11-30 03:13:32,498 | INFO     | collected zombie processes
[2025-11-30 04:14:22] 2025-11-30 03:13:32,499 | INFO     | will attempt to kill all subprocesses of pid=23962
[2025-11-30 04:14:22] 2025-11-30 03:13:32,599 | INFO     | process IDs to be killed: [23962] (in reverse order)
[2025-11-30 04:14:22] 2025-11-30 03:13:33,609 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 04:14:22] 2025-11-30 03:13:33,609 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 04:14:22] 2025-11-30 03:13:33,612 | INFO     | did not find any defunct processes belonging to 23962
[2025-11-30 04:14:22] 2025-11-30 03:13:33,615 | INFO     | did not find any defunct processes belonging to 23962
[2025-11-30 04:14:22] 2025-11-30 03:13:33,644 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 04:14:22] 2025-11-30 03:13:33,644 | INFO     | ready for new job
[2025-11-30 04:14:22] 2025-11-30 03:13:33,645 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 04:14:22] 2025-11-30 03:13:33,650 | INFO     | ***************************************
[2025-11-30 04:14:22] 2025-11-30 03:13:33,650 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 04:14:22] 2025-11-30 03:13:33,650 | INFO     | ***************************************
[2025-11-30 04:14:22] 2025-11-30 03:13:33,651 | INFO     | 
[2025-11-30 04:14:22] 2025-11-30 03:13:33,651 | INFO     | pilot is running in a VM
[2025-11-30 04:14:22] 2025-11-30 03:13:33,651 | INFO     | architecture information:
[2025-11-30 04:14:22] 2025-11-30 03:13:33,657 | INFO     | executing command: cat /etc/os-release
[2025-11-30 04:14:22] 2025-11-30 03:13:33,884 | INFO     | cat /etc/os-release:
[2025-11-30 04:14:22] NAME="CentOS Linux"
[2025-11-30 04:14:22] VERSION="7 (Core)"
[2025-11-30 04:14:22] ID="centos"
[2025-11-30 04:14:22] ID_LIKE="rhel fedora"
[2025-11-30 04:14:22] VERSION_ID="7"
[2025-11-30 04:14:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 04:14:22] ANSI_COLOR="0;31"
[2025-11-30 04:14:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 04:14:22] HOME_URL="https://www.centos.org/"
[2025-11-30 04:14:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 04:14:22] 
[2025-11-30 04:14:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 04:14:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 04:14:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 04:14:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 04:14:22] 
[2025-11-30 04:14:22] 2025-11-30 03:13:33,885 | INFO     | ***************************************
[2025-11-30 04:14:22] 2025-11-30 03:13:34,388 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-11-30 04:14:22] 2025-11-30 03:13:34,629 | INFO     | sufficient remaining disk space (488213839872 B)
[2025-11-30 04:14:22] 2025-11-30 03:13:34,629 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 04:14:22] 2025-11-30 03:13:34,629 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 04:14:22] 2025-11-30 03:13:34,630 | INFO     | update_server=False
[2025-11-30 04:14:22] 2025-11-30 03:13:34,630 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 04:14:22] 2025-11-30 03:13:34,735 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 04:14:22] 2025-11-30 03:13:34,735 | INFO     | aborting loop
[2025-11-30 04:14:22] 2025-11-30 03:13:34,882 | INFO     | all job control threads have been joined
[2025-11-30 04:14:22] 2025-11-30 03:13:35,471 | INFO     | all data control threads have been joined
[2025-11-30 04:14:22] 2025-11-30 03:13:35,593 | INFO     | all payload control threads have been joined
[2025-11-30 04:14:22] 2025-11-30 03:13:35,636 | INFO     | [job] retrieve thread has finished
[2025-11-30 04:14:22] 2025-11-30 03:13:35,707 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 04:14:22] 2025-11-30 03:13:35,741 | INFO     | [job] job monitor thread has finished
[2025-11-30 04:14:22] 2025-11-30 03:13:35,777 | INFO     | [job] validate thread has finished
[2025-11-30 04:14:22] 2025-11-30 03:13:35,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 04:14:22] 2025-11-30 03:13:35,888 | INFO     | [job] control thread has finished
[2025-11-30 04:14:22] 2025-11-30 03:13:36,090 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 04:14:22] 2025-11-30 03:13:36,095 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 04:14:22] 2025-11-30 03:13:36,214 | INFO     | [payload] failed_post thread has finished
[2025-11-30 04:14:22] 2025-11-30 03:13:36,224 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 04:14:22] 2025-11-30 03:13:36,381 | INFO     | [data] copytool_in thread has finished
[2025-11-30 04:14:22] 2025-11-30 03:13:36,477 | INFO     | [data] control thread has finished
[2025-11-30 04:14:22] 2025-11-30 03:13:36,599 | INFO     | [payload] control thread has finished
[2025-11-30 04:14:22] 2025-11-30 03:13:36,646 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 04:14:22] 2025-11-30 03:13:36,665 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 04:14:22] 2025-11-30 03:13:36,821 | INFO     | [job] queue monitor thread has finished
[2025-11-30 04:14:22] 2025-11-30 03:13:37,234 | INFO     | [payload] validate_post thread has finished
[2025-11-30 04:14:22] 2025-11-30 03:13:38,102 | INFO     | [data] copytool_out thread has finished
[2025-11-30 04:14:22] 2025-11-30 03:13:40,658 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 04:14:22] 2025-11-30 03:14:04,583 | INFO     | PID=17429 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 04:14:22] 2025-11-30 03:14:04,583 | INFO     | .. there are 9 such processes running
[2025-11-30 04:14:22] 2025-11-30 03:14:04,583 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 04:14:22] 2025-11-30 03:14:04,583 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 04:14:22] 2025-11-30 03:14:04,583 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 04:14:22] 2025-11-30 03:14:11,665 | INFO     | [monitor] cgroup control has ended
[2025-11-30 04:14:22] 2025-11-30 03:14:12,975 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139641643669312)>', '<ExcThread(monitor, started 139640854013696)>']
[2025-11-30 04:14:22] 2025-11-30 03:14:13,637 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 04:14:22] 2025-11-30 03:14:13,637 | INFO     | [monitor] control thread has ended
[2025-11-30 04:14:22] 2025-11-30 03:14:18,001 | INFO     | all workflow threads have been joined
[2025-11-30 04:14:22] 2025-11-30 03:14:18,001 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 04:14:22] 2025-11-30 03:14:18,001 | INFO     | traces error code: 0
[2025-11-30 04:14:22] 2025-11-30 03:14:18,002 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 04:14:22] 2025-11-30 03:14:18,360 [wrapper] ==== pilot stdout END ====
[2025-11-30 04:14:22] 2025-11-30 03:14:18,476 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 04:14:22] 2025-11-30 03:14:18,534 [wrapper] pilotpid: 17429
[2025-11-30 04:14:22] 2025-11-30 03:14:18,547 [wrapper] Pilot exit status: 0
[2025-11-30 04:14:22] 2025-11-30 03:14:18,791 [wrapper] pandaids: 6898039688
[2025-11-30 04:14:22] 2025-11-30 03:14:19,159 [wrapper] cleanup supervisor_pilot 23378 17430
[2025-11-30 04:14:22] 2025-11-30 03:14:19,263 [wrapper] Test setup, not cleaning
[2025-11-30 04:14:22] 2025-11-30 03:14:19,361 [wrapper] apfmon messages muted
[2025-11-30 04:14:22] 2025-11-30 03:14:19,456 [wrapper] ==== wrapper stdout END ====
[2025-11-30 04:14:22] 2025-11-30 03:14:19,534 [wrapper] ==== wrapper stderr END ====
[2025-11-30 04:14:22]  *** Error codes and diagnostics ***
[2025-11-30 04:14:22]     "exeErrorCode": 0,
[2025-11-30 04:14:22]     "exeErrorDiag": "",
[2025-11-30 04:14:22]     "pilotErrorCode": 0,
[2025-11-30 04:14:22]     "pilotErrorDiag": "",
[2025-11-30 04:14:22]  *** Listing of results directory ***
[2025-11-30 04:14:22] total 1326736
[2025-11-30 04:14:22] -rw-r--r--. 1 boinc boinc    576529 Nov 26 03:38 pilot3.tar.gz
[2025-11-30 04:14:22] -rw-r--r--. 1 boinc boinc      5112 Nov 26 04:02 queuedata.json
[2025-11-30 04:14:22] -rwx------. 1 boinc boinc     36292 Nov 26 04:03 runpilot2-wrapper.sh
[2025-11-30 04:14:22] -rw-r--r--. 1 boinc boinc       100 Nov 29 04:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 04:14:22] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 04:31 run_atlas
[2025-11-30 04:14:22] -rw-r--r--. 1 boinc boinc       105 Nov 29 04:31 job.xml
[2025-11-30 04:14:22] -rw-r--r--. 1 boinc boinc      6391 Nov 29 04:31 init_data.xml
[2025-11-30 04:14:22] -rw-r--r--. 2 boinc boinc 409834379 Nov 29 04:31 EVNT.47483658._002404.pool.root.1
[2025-11-30 04:14:22] -rw-r--r--. 2 boinc boinc     15847 Nov 29 04:31 start_atlas.sh
[2025-11-30 04:14:22] drwxrwx--x. 2 boinc boinc        68 Nov 29 04:31 shared
[2025-11-30 04:14:22] -rw-r--r--. 2 boinc boinc    590102 Nov 29 04:31 input.tar.gz
[2025-11-30 04:14:22] -rw-r--r--. 1 boinc boinc         0 Nov 29 04:31 boinc_lockfile
[2025-11-30 04:14:22] -rw-r--r--. 1 boinc boinc      2785 Nov 29 04:31 pandaJob.out
[2025-11-30 04:14:22] -rw-------. 1 boinc boinc    991834 Nov 29 04:34 agis_schedconf.cvmfs.json
[2025-11-30 04:14:22] drwx------. 5 boinc boinc      4096 Nov 29 04:34 pilot3
[2025-11-30 04:14:22] -rw-r--r--. 1 boinc boinc       533 Nov 30 03:48 boinc_task_state.xml
[2025-11-30 04:14:22] -rw-------. 1 boinc boinc 917195585 Nov 30 04:10 HITS.47556161._003868.pool.root.1
[2025-11-30 04:14:22] -rw-------. 1 boinc boinc      1031 Nov 30 04:11 memory_monitor_summary.json
[2025-11-30 04:14:22] -rw-------. 1 boinc boinc   1516240 Nov 30 04:11 agis_ddmendpoints.agis.ALL.json
[2025-11-30 04:14:22] -rw-------. 1 boinc boinc   2476103 Nov 30 04:11 log.47556161._003868.job.log.tgz.1
[2025-11-30 04:14:22] -rw-------. 1 boinc boinc        95 Nov 30 04:13 pilot_heartbeat.json
[2025-11-30 04:14:22] -rw-------. 1 boinc boinc      8639 Nov 30 04:13 heartbeat.json
[2025-11-30 04:14:22] -rw-r--r--. 1 boinc boinc      8192 Nov 30 04:14 boinc_mmap_file
[2025-11-30 04:14:22] -rw-r--r--. 1 boinc boinc        29 Nov 30 04:14 wrapper_checkpoint.txt
[2025-11-30 04:14:22] -rw-------. 1 boinc boinc      4885 Nov 30 04:14 pilotlog.txt
[2025-11-30 04:14:22] -rw-------. 1 boinc boinc  11343683 Nov 30 04:14 log.47556161._003868.job.log.1
[2025-11-30 04:14:22] -rw-------. 1 boinc boinc       353 Nov 30 04:14 output.list
[2025-11-30 04:14:22] -rw-r--r--. 1 boinc boinc       620 Nov 30 04:14 runtime_log
[2025-11-30 04:14:22] -rw-------. 1 boinc boinc  13844480 Nov 30 04:14 result.tar.gz
[2025-11-30 04:14:22] -rw-r--r--. 1 boinc boinc      8833 Nov 30 04:14 runtime_log.err
[2025-11-30 04:14:22] -rw-------. 1 boinc boinc       662 Nov 30 04:14 batKDmnzKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNmMKDmffmXXn.diag
[2025-11-30 04:14:22] -rw-r--r--. 1 boinc boinc     21506 Nov 30 04:14 stderr.txt
[2025-11-30 04:14:22] HITS file was successfully produced:
[2025-11-30 04:14:22] -rw-------. 1 boinc boinc 917195585 Nov 30 04:10 shared/HITS.pool.root.1
[2025-11-30 04:14:22]  *** Contents of shared directory: ***
[2025-11-30 04:14:22] total 1310048
[2025-11-30 04:14:22] -rw-r--r--. 2 boinc boinc 409834379 Nov 29 04:31 ATLAS.root_0
[2025-11-30 04:14:22] -rw-r--r--. 2 boinc boinc     15847 Nov 29 04:31 start_atlas.sh
[2025-11-30 04:14:22] -rw-r--r--. 2 boinc boinc    590102 Nov 29 04:31 input.tar.gz
[2025-11-30 04:14:22] -rw-------. 1 boinc boinc 917195585 Nov 30 04:10 HITS.pool.root.1
[2025-11-30 04:14:22] -rw-------. 1 boinc boinc  13844480 Nov 30 04:14 result.tar.gz
04:14:24 (13608): run_atlas exited; CPU time 318927.764629
04:14:24 (13608): called boinc_finish(0)

</stderr_txt>
]]>

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