Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:02:35 (1782429): wrapper (7.7.26015): starting
20:02:35 (1782429): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 20:02:35] Arguments: --nthreads 8
[2025-11-26 20:02:35] Threads: 8
[2025-11-26 20:02:35] Checking for CVMFS
[2025-11-26 20:02:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 20:02:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 20:02:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 20:02:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 20:02:37] 2.13.3.0 10079 29107 412920 153341 2 767 29214383 32935936 60038 16776704 0 325689973 99.794 167637016 28954 http://cvmfs-egi.gridpp.rl.ac.uk:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 20:02:37] CVMFS is ok
[2025-11-26 20:02:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 20:02:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 20:02:37] Further information can be found at the LHC@home message board.
[2025-11-26 20:02:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 20:02:37] Checking for apptainer binary...
[2025-11-26 20:02:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 20:02:37] Running /usr/bin/apptainer --version
[2025-11-26 20:02:37] apptainer version 1.4.4-1.el9
[2025-11-26 20:02:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 20:02:38] lc-12-33.aglt2.org
[2025-11-26 20:02:38] apptainer works
[2025-11-26 20:02:38] Set ATHENA_PROC_NUMBER=8
[2025-11-26 20:02:38] Set ATHENA_CORE_NUMBER=8
[2025-11-26 20:02:38] Starting ATLAS job with PandaID=6898039696
[2025-11-26 20:02:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:44:45]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:44:45] 2025-11-28 00:43:55,615 | INFO     | time since job start (85212s) is within the limit (172800.0s)
[2025-11-27 19:44:45] 2025-11-28 00:43:56,254 | INFO     | monitor loop #4487: job 0:6898039696 is in state 'finished'
[2025-11-27 19:44:45] 2025-11-28 00:43:56,255 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:44:45] 2025-11-28 00:43:57,631 | INFO     | time since job start (85214s) is within the limit (172800.0s)
[2025-11-27 19:44:45] 2025-11-28 00:43:58,863 | INFO     | monitor loop #4488: job 0:6898039696 is in state 'finished'
[2025-11-27 19:44:45] 2025-11-28 00:43:58,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:44:45] 2025-11-28 00:44:01,481 | INFO     | monitor loop #4489: job 0:6898039696 is in state 'finished'
[2025-11-27 19:44:45] 2025-11-28 00:44:01,481 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:44:45] 2025-11-28 00:44:01,887 | INFO     | PID=1797937 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:44:45] 2025-11-28 00:44:01,887 | INFO     | .. there are 90 such processes running
[2025-11-27 19:44:45] 2025-11-28 00:44:02,913 | INFO     | time since job start (85219s) is within the limit (172800.0s)
[2025-11-27 19:44:45] 2025-11-28 00:44:04,005 | INFO     | monitor loop #4490: job 0:6898039696 is in state 'finished'
[2025-11-27 19:44:45] 2025-11-28 00:44:04,005 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:44:45] 2025-11-28 00:44:04,975 | INFO     | time since job start (85221s) is within the limit (172800.0s)
[2025-11-27 19:44:45] 2025-11-28 00:44:06,513 | INFO     | monitor loop #4491: job 0:6898039696 is in state 'finished'
[2025-11-27 19:44:45] 2025-11-28 00:44:06,513 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:44:45] 2025-11-28 00:44:06,782 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 19:44:45] 2025-11-28 00:44:06,813 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2784.300333333333
[2025-11-27 19:44:45] 2025-11-28 00:44:06,939 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6898039696/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:44:45] 2025-11-28 00:44:06,940 | INFO     | extracted standard info from prmon json
[2025-11-27 19:44:45] 2025-11-28 00:44:06,940 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:44:45] 2025-11-28 00:44:06,940 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:44:45] 2025-11-28 00:44:06,999 | INFO     | time since job start (85223s) is within the limit (172800.0s)
[2025-11-27 19:44:45] 2025-11-28 00:44:07,059 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:44:45] 2025-11-28 00:44:07,061 | INFO     | sum of square deviations: 841791436458.1056
[2025-11-27 19:44:45] 2025-11-28 00:44:07,099 | INFO     | sum of deviations: 3720430497480.7593
[2025-11-27 19:44:45] 2025-11-28 00:44:07,099 | INFO     | mean x: 1764248084.2422938
[2025-11-27 19:44:45] 2025-11-28 00:44:07,099 | INFO     | mean y: 2902190.8616487454
[2025-11-27 19:44:45] 2025-11-28 00:44:07,100 | INFO     | intersect: -7794471473.753553
[2025-11-27 19:44:45] 2025-11-28 00:44:07,101 | INFO     | chi2: 19.485649492286154
[2025-11-27 19:44:45] 2025-11-28 00:44:07,103 | INFO     | sum of square deviations: 832773261980.8752
[2025-11-27 19:44:45] 2025-11-28 00:44:07,149 | INFO     | sum of deviations: 4205443317608.5283
[2025-11-27 19:44:45] 2025-11-28 00:44:07,149 | INFO     | mean x: 1764247931.7496402
[2025-11-27 19:44:45] 2025-11-28 00:44:07,150 | INFO     | mean y: 2910390.0503597124
[2025-11-27 19:44:45] 2025-11-28 00:44:07,150 | INFO     | intersect: -8906411047.01516
[2025-11-27 19:44:45] 2025-11-28 00:44:07,159 | INFO     | chi2: 16.060303699021077
[2025-11-27 19:44:45] 2025-11-28 00:44:07,160 | INFO     | current chi2=16.060303699021077 (change=17.57881252365275 %)
[2025-11-27 19:44:45] 2025-11-28 00:44:07,160 | INFO     | right removable region: 1389
[2025-11-27 19:44:45] 2025-11-28 00:44:07,162 | INFO     | sum of square deviations: 832771438870.3756
[2025-11-27 19:44:45] 2025-11-28 00:44:07,402 | INFO     | sum of deviations: 3165048706274.5054
[2025-11-27 19:44:45] 2025-11-28 00:44:07,402 | INFO     | mean x: 1764248236.7503598
[2025-11-27 19:44:45] 2025-11-28 00:44:07,402 | INFO     | mean y: 2911579.4884892087
[2025-11-27 19:44:45] 2025-11-28 00:44:07,402 | INFO     | intersect: -6702327503.696454
[2025-11-27 19:44:45] 2025-11-28 00:44:07,404 | INFO     | chi2: 15.481794521623998
[2025-11-27 19:44:45] 2025-11-28 00:44:07,431 | INFO     | current chi2=15.481794521623998 (change=20.547711136070546 %)
[2025-11-27 19:44:45] 2025-11-28 00:44:07,432 | INFO     | left removable region: 10
[2025-11-27 19:44:45] 2025-11-28 00:44:07,433 | INFO     | sum of square deviations: 813156814187.7942
[2025-11-27 19:44:45] 2025-11-28 00:44:07,698 | INFO     | sum of deviations: 3260206304793.434
[2025-11-27 19:44:45] 2025-11-28 00:44:07,699 | INFO     | mean x: 1764248206.26686
[2025-11-27 19:44:45] 2025-11-28 00:44:07,699 | INFO     | mean y: 2929476.8738216097
[2025-11-27 19:44:45] 2025-11-28 00:44:07,699 | INFO     | intersect: -7070507066.896411
[2025-11-27 19:44:45] 2025-11-28 00:44:07,701 | INFO     | chi2: 8.582633401282857
[2025-11-27 19:44:45] 2025-11-28 00:44:07,701 | INFO     | current memory leak: 4.01 B/s (using 1379 data points, chi2=8.58)
[2025-11-27 19:44:45] 2025-11-28 00:44:07,724 | INFO     | could have reported an average CPU frequency of 2777 MHz (50 samples)
[2025-11-27 19:44:45] 2025-11-28 00:44:07,724 | INFO     | ..............................
[2025-11-27 19:44:45] 2025-11-28 00:44:07,724 | INFO     | . Timing measurements:
[2025-11-27 19:44:45] 2025-11-28 00:44:07,724 | INFO     | . get job = 0 s
[2025-11-27 19:44:45] 2025-11-28 00:44:07,724 | INFO     | . initial setup = 5 s
[2025-11-27 19:44:45] 2025-11-28 00:44:07,724 | INFO     | . payload setup = 46 s
[2025-11-27 19:44:45] 2025-11-28 00:44:07,724 | INFO     | . stage-in = 0 s
[2025-11-27 19:44:45] 2025-11-28 00:44:07,724 | INFO     | . payload execution = 85066 s
[2025-11-27 19:44:45] 2025-11-28 00:44:07,725 | INFO     | . stage-out = 11 s
[2025-11-27 19:44:45] 2025-11-28 00:44:07,725 | INFO     | . log creation = 3 s
[2025-11-27 19:44:45] 2025-11-28 00:44:07,725 | INFO     | ..............................
[2025-11-27 19:44:45] 2025-11-28 00:44:08,272 | INFO     | 
[2025-11-27 19:44:45] 2025-11-28 00:44:08,272 | INFO     | job summary report
[2025-11-27 19:44:45] 2025-11-28 00:44:08,273 | INFO     | --------------------------------------------------
[2025-11-27 19:44:45] 2025-11-28 00:44:08,273 | INFO     | PanDA job id: 6898039696
[2025-11-27 19:44:45] 2025-11-28 00:44:08,273 | INFO     | task id: 47556173
[2025-11-27 19:44:45] 2025-11-28 00:44:08,273 | INFO     | errors: (none)
[2025-11-27 19:44:45] 2025-11-28 00:44:08,273 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:44:45] 2025-11-28 00:44:08,273 | INFO     | pilot state: finished 
[2025-11-27 19:44:45] 2025-11-28 00:44:08,273 | INFO     | transexitcode: 0
[2025-11-27 19:44:45] 2025-11-28 00:44:08,273 | INFO     | exeerrorcode: 0
[2025-11-27 19:44:45] 2025-11-28 00:44:08,273 | INFO     | exeerrordiag: 
[2025-11-27 19:44:45] 2025-11-28 00:44:08,273 | INFO     | exitcode: 0
[2025-11-27 19:44:45] 2025-11-28 00:44:08,273 | INFO     | exitmsg: OK
[2025-11-27 19:44:45] 2025-11-28 00:44:08,273 | INFO     | cpuconsumptiontime: 263744 s
[2025-11-27 19:44:45] 2025-11-28 00:44:08,273 | INFO     | nevents: 1000
[2025-11-27 19:44:45] 2025-11-28 00:44:08,273 | INFO     | neventsw: 0
[2025-11-27 19:44:45] 2025-11-28 00:44:08,274 | INFO     | pid: 1821328
[2025-11-27 19:44:45] 2025-11-28 00:44:08,274 | INFO     | pgrp: 1821328
[2025-11-27 19:44:45] 2025-11-28 00:44:08,274 | INFO     | corecount: 8
[2025-11-27 19:44:45] 2025-11-28 00:44:08,274 | INFO     | event service: False
[2025-11-27 19:44:45] 2025-11-28 00:44:08,274 | INFO     | sizes: {0: 2283436, 1: 2284121, 2: 2284320, 13: 2284320, 24: 2284376, 35: 2284822, 85113: 2348036, 85125: 2357030, 85127: 2357086, 85159: 2357332}
[2025-11-27 19:44:45] 2025-11-28 00:44:08,274 | INFO     | --------------------------------------------------
[2025-11-27 19:44:45] 2025-11-28 00:44:08,274 | INFO     | 
[2025-11-27 19:44:45] 2025-11-28 00:44:08,274 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 19:44:45] 2025-11-28 00:44:08,353 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,354 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,354 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,354 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,354 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,354 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,354 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,354 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,355 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,355 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,355 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,355 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,355 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,355 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,355 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,355 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,355 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,355 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:44:45] 2025-11-28 00:44:08,356 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,356 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:44:45] 2025-11-28 00:44:08,356 | INFO     | job 6898039696 has completed (purged errors)
[2025-11-27 19:44:45] 2025-11-28 00:44:08,356 | INFO     | overall cleanup function is called
[2025-11-27 19:44:45] 2025-11-28 00:44:09,456 | INFO     | --- collectZombieJob: --- 10, [1821328]
[2025-11-27 19:44:45] 2025-11-28 00:44:09,456 | INFO     | zombie collector waiting for pid 1821328
[2025-11-27 19:44:45] 2025-11-28 00:44:09,457 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:44:45] 2025-11-28 00:44:09,457 | INFO     | collected zombie processes
[2025-11-27 19:44:45] 2025-11-28 00:44:09,457 | INFO     | will attempt to kill all subprocesses of pid=1821328
[2025-11-27 19:44:45] 2025-11-28 00:44:11,057 | INFO     | process IDs to be killed: [1821328] (in reverse order)
[2025-11-27 19:44:45] 2025-11-28 00:44:11,462 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:44:45] 2025-11-28 00:44:11,463 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:44:45] 2025-11-28 00:44:11,619 | INFO     | did not find any defunct processes belonging to 1821328
[2025-11-27 19:44:45] 2025-11-28 00:44:11,823 | INFO     | did not find any defunct processes belonging to 1821328
[2025-11-27 19:44:45] 2025-11-28 00:44:11,847 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:44:45] 2025-11-28 00:44:11,847 | INFO     | ready for new job
[2025-11-27 19:44:45] 2025-11-28 00:44:11,847 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:44:45] 2025-11-28 00:44:11,866 | INFO     | ***************************************
[2025-11-27 19:44:45] 2025-11-28 00:44:11,870 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:44:45] 2025-11-28 00:44:11,871 | INFO     | ***************************************
[2025-11-27 19:44:45] 2025-11-28 00:44:11,871 | INFO     | 
[2025-11-27 19:44:45] 2025-11-28 00:44:11,877 | INFO     | architecture information:
[2025-11-27 19:44:45] 2025-11-28 00:44:11,878 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:44:45] 2025-11-28 00:44:11,909 | INFO     | cat /etc/os-release:
[2025-11-27 19:44:45] NAME="CentOS Linux"
[2025-11-27 19:44:45] VERSION="7 (Core)"
[2025-11-27 19:44:45] ID="centos"
[2025-11-27 19:44:45] ID_LIKE="rhel fedora"
[2025-11-27 19:44:45] VERSION_ID="7"
[2025-11-27 19:44:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:44:45] ANSI_COLOR="0;31"
[2025-11-27 19:44:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:44:45] HOME_URL="https://www.centos.org/"
[2025-11-27 19:44:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:44:45] 
[2025-11-27 19:44:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:44:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:44:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:44:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:44:45] 
[2025-11-27 19:44:45] 2025-11-28 00:44:11,913 | INFO     | ***************************************
[2025-11-27 19:44:45] 2025-11-28 00:44:12,416 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 19:44:45] 2025-11-28 00:44:12,470 | INFO     | sufficient remaining disk space (67986522112 B)
[2025-11-27 19:44:45] 2025-11-28 00:44:12,470 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:44:45] 2025-11-28 00:44:12,470 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:44:45] 2025-11-28 00:44:12,470 | INFO     | update_server=False
[2025-11-27 19:44:45] 2025-11-28 00:44:12,470 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:44:45] 2025-11-28 00:44:12,516 | INFO     | all data control threads have been joined
[2025-11-27 19:44:45] 2025-11-28 00:44:12,570 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:44:45] 2025-11-28 00:44:12,571 | INFO     | aborting loop
[2025-11-27 19:44:45] 2025-11-28 00:44:12,811 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:44:45] 2025-11-28 00:44:12,851 | INFO     | all job control threads have been joined
[2025-11-27 19:44:45] 2025-11-28 00:44:13,064 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:44:45] 2025-11-28 00:44:13,068 | INFO     | all payload control threads have been joined
[2025-11-27 19:44:45] 2025-11-28 00:44:13,478 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:44:45] 2025-11-28 00:44:13,522 | INFO     | [data] control thread has finished
[2025-11-27 19:44:45] 2025-11-28 00:44:13,576 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:44:45] 2025-11-28 00:44:13,593 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:44:45] 2025-11-28 00:44:13,594 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:44:45] 2025-11-28 00:44:13,594 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:44:45] 2025-11-28 00:44:13,625 | INFO     | [job] validate thread has finished
[2025-11-27 19:44:45] 2025-11-28 00:44:13,707 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:44:45] 2025-11-28 00:44:13,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:44:45] 2025-11-28 00:44:13,857 | INFO     | [job] control thread has finished
[2025-11-27 19:44:45] 2025-11-28 00:44:13,892 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:44:45] 2025-11-28 00:44:14,070 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:44:45] 2025-11-28 00:44:14,074 | INFO     | [payload] control thread has finished
[2025-11-27 19:44:45] 2025-11-28 00:44:14,327 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:44:45] 2025-11-28 00:44:14,831 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:44:45] 2025-11-28 00:44:15,067 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:44:45] 2025-11-28 00:44:17,731 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:44:45] 2025-11-28 00:44:18,626 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:44:45] 2025-11-28 00:44:20,240 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139669550868288)>', '<ExcThread(monitor, started 139668830017280)>']
[2025-11-27 19:44:45] 2025-11-28 00:44:25,266 | INFO     | all workflow threads have been joined
[2025-11-27 19:44:45] 2025-11-28 00:44:25,267 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:44:45] 2025-11-28 00:44:25,267 | INFO     | traces error code: 0
[2025-11-27 19:44:45] 2025-11-28 00:44:25,267 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:44:45] 2025-11-28 00:44:43,729 | INFO     | PID=1797937 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:44:45] 2025-11-28 00:44:43,729 | INFO     | .. there are 90 such processes running
[2025-11-27 19:44:45] 2025-11-28 00:44:43,729 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:44:45] 2025-11-28 00:44:43,729 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:44:45] 2025-11-28 00:44:43,729 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:44:45] 2025-11-28 00:44:43,730 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:44:45] 2025-11-28 00:44:43,730 | INFO     | [monitor] control thread has ended
[2025-11-27 19:44:45] 2025-11-28 00:44:44,080 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:44:45] 2025-11-28 00:44:44,089 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:44:45] 2025-11-28 00:44:44,100 [wrapper] pilotpid: 1797937
[2025-11-27 19:44:45] 2025-11-28 00:44:44,112 [wrapper] Pilot exit status: 0
[2025-11-27 19:44:45] 2025-11-28 00:44:44,211 [wrapper] pandaids: 6898039696
[2025-11-27 19:44:45] 2025-11-28 00:44:44,394 [wrapper] cleanup supervisor_pilot 2529582 1797938
[2025-11-27 19:44:45] 2025-11-28 00:44:44,417 [wrapper] Test setup, not cleaning
[2025-11-27 19:44:45] 2025-11-28 00:44:44,440 [wrapper] apfmon messages muted
[2025-11-27 19:44:45] 2025-11-28 00:44:44,475 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:44:45] 2025-11-28 00:44:44,497 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:44:45]  *** Error codes and diagnostics ***
[2025-11-27 19:44:45]     "exeErrorCode": 0,
[2025-11-27 19:44:45]     "exeErrorDiag": "",
[2025-11-27 19:44:45]     "pilotErrorCode": 0,
[2025-11-27 19:44:45]     "pilotErrorDiag": "",
[2025-11-27 19:44:45]  *** Listing of results directory ***
[2025-11-27 19:44:45] total 1334484
[2025-11-27 19:44:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 21:38 pilot3.tar.gz
[2025-11-27 19:44:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:02 queuedata.json
[2025-11-27 19:44:45] -rwx------. 1 boincer umatlas     36292 Nov 25 22:03 runpilot2-wrapper.sh
[2025-11-27 19:44:45] -rw-r--r--. 1 boincer umatlas       100 Nov 26 20:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:44:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 20:02 run_atlas
[2025-11-27 19:44:45] -rw-r--r--. 1 boincer umatlas       105 Nov 26 20:02 job.xml
[2025-11-27 19:44:45] -rw-r--r--. 2 boincer umatlas 411434002 Nov 26 20:02 EVNT.47483658._003157.pool.root.1
[2025-11-27 19:44:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 20:02 start_atlas.sh
[2025-11-27 19:44:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 20:02 shared
[2025-11-27 19:44:45] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 20:02 input.tar.gz
[2025-11-27 19:44:45] -rw-r--r--. 1 boincer umatlas         0 Nov 26 20:02 boinc_lockfile
[2025-11-27 19:44:45] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 20:02 pandaJob.out
[2025-11-27 19:44:45] -rw-------. 1 boincer umatlas        57 Nov 26 20:02 setup.sh.local
[2025-11-27 19:44:45] -rw-------. 1 boincer umatlas    991546 Nov 26 20:03 agis_schedconf.cvmfs.json
[2025-11-27 19:44:45] drwx------. 5 boincer umatlas      4096 Nov 26 20:03 pilot3
[2025-11-27 19:44:45] -rw-r--r--. 1 boincer umatlas       533 Nov 27 19:14 boinc_task_state.xml
[2025-11-27 19:44:45] -rw-r--r--. 1 boincer umatlas      6884 Nov 27 19:36 init_data.xml
[2025-11-27 19:44:45] -rw-------. 1 boincer umatlas 926521719 Nov 27 19:42 HITS.47556173._001138.pool.root.1
[2025-11-27 19:44:45] -rw-------. 1 boincer umatlas      1060 Nov 27 19:43 memory_monitor_summary.json
[2025-11-27 19:44:45] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:43 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:44:45] -rw-------. 1 boincer umatlas   2382094 Nov 27 19:43 log.47556173._001138.job.log.tgz.1
[2025-11-27 19:44:45] -rw-------. 1 boincer umatlas        95 Nov 27 19:43 pilot_heartbeat.json
[2025-11-27 19:44:45] -rw-------. 1 boincer umatlas      8622 Nov 27 19:44 heartbeat.json
[2025-11-27 19:44:45] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:44 boinc_mmap_file
[2025-11-27 19:44:45] -rw-r--r--. 1 boincer umatlas        29 Nov 27 19:44 wrapper_checkpoint.txt
[2025-11-27 19:44:45] -rw-------. 1 boincer umatlas       823 Nov 27 19:44 pilotlog.txt
[2025-11-27 19:44:45] -rw-------. 1 boincer umatlas   9936334 Nov 27 19:44 log.47556173._001138.job.log.1
[2025-11-27 19:44:45] -rw-------. 1 boincer umatlas       353 Nov 27 19:44 output.list
[2025-11-27 19:44:45] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:44 runtime_log
[2025-11-27 19:44:45] -rw-------. 1 boincer umatlas  12339200 Nov 27 19:44 result.tar.gz
[2025-11-27 19:44:45] -rw-------. 1 boincer umatlas       660 Nov 27 19:44 Z6zKDmnzKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSmMKDmvSfeRm.diag
[2025-11-27 19:44:45] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 19:44 runtime_log.err
[2025-11-27 19:44:45] -rw-r--r--. 1 boincer umatlas     21874 Nov 27 19:44 stderr.txt
[2025-11-27 19:44:45] HITS file was successfully produced:
[2025-11-27 19:44:45] -rw-------. 1 boincer umatlas 926521719 Nov 27 19:42 shared/HITS.pool.root.1
[2025-11-27 19:44:45]  *** Contents of shared directory: ***
[2025-11-27 19:44:45] total 1319256
[2025-11-27 19:44:45] -rw-r--r--. 2 boincer umatlas 411434002 Nov 26 20:02 ATLAS.root_0
[2025-11-27 19:44:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 20:02 start_atlas.sh
[2025-11-27 19:44:45] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 20:02 input.tar.gz
[2025-11-27 19:44:45] -rw-------. 1 boincer umatlas 926521719 Nov 27 19:42 HITS.pool.root.1
[2025-11-27 19:44:45] -rw-------. 1 boincer umatlas  12339200 Nov 27 19:44 result.tar.gz
19:44:47 (1782429): run_atlas exited; CPU time 268760.207800
19:44:47 (1782429): called boinc_finish(0)

</stderr_txt>
]]>

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