Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:38:07 (3022027): wrapper (7.7.26015): starting
18:38:07 (3022027): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 18:38:07] Arguments: --nthreads 12
[2025-11-26 18:38:07] Threads: 12
[2025-11-26 18:38:07] Checking for CVMFS
[2025-11-26 18:38:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:38:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:38:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:38:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:38:08] 2.11.5.0 4091557 28948 220640 153343 3 257 26728127 45568000 31257 130560 0 217108277 99.752 151868307 21761 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 18:38:08] CVMFS is ok
[2025-11-26 18:38:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:38:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:38:08] Further information can be found at the LHC@home message board.
[2025-11-26 18:38:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:38:08] Checking for apptainer binary...
[2025-11-26 18:38:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:38:08] Running /usr/bin/apptainer --version
[2025-11-26 18:38:08] apptainer version 1.4.1-1.el9
[2025-11-26 18:38:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:38:09] wns0073.triumf.lcg
[2025-11-26 18:38:09] apptainer works
[2025-11-26 18:38:10] Set ATHENA_PROC_NUMBER=12
[2025-11-26 18:38:10] Set ATHENA_CORE_NUMBER=12
[2025-11-26 18:38:10] Starting ATLAS job with PandaID=6898378580
[2025-11-26 18:38:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:47:59]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:47:59] 2025-11-27 02:47:10,402 | INFO     | could have reported an average CPU frequency of 1368 MHz (4 samples)
[2025-11-26 18:47:59] 2025-11-27 02:47:10,402 | INFO     | ..............................
[2025-11-26 18:47:59] 2025-11-27 02:47:10,403 | INFO     | . Timing measurements:
[2025-11-26 18:47:59] 2025-11-27 02:47:10,403 | INFO     | . get job = 0 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,403 | INFO     | . initial setup = 4 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,403 | INFO     | . payload setup = 34 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,403 | INFO     | . stage-in = 0 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | . payload execution = 259 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | . stage-out = 1 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | . log creation = 0 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | ..............................
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898378580/pilotlog.txt
[2025-11-26 18:47:59] 2025-11-27 02:47:10,434 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 18:47:59] - Log from pilotlog.txt -
[2025-11-26 18:47:59] 2025-11-27 02:47:10,398 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898378580/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:47:59] 2025-11-27 02:47:10,399 | INFO     | extracted standard info from prmon json
[2025-11-26 18:47:59] 2025-11-27 02:47:10,400 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:47:59] 2025-11-27 02:47:10,400 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:47:59] 2025-11-27 02:47:10,400 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 18:47:59] 2025-11-27 02:47:10,400 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 18:47:59] 2025-11-27 02:47:10,401 | WARNING  | wrong length of table data, x=[1764211254.0, 1764211315.0, 1764211376.0, 1764211437.0], y=[1764.0, 343369.0, 626558.0, 372040.0] (must be same and length>=4)
[2025-11-26 18:47:59] 2025-11-27 02:47:10,402 | INFO     | could have reported an average CPU frequency of 1368 MHz (4 samples)
[2025-11-26 18:47:59] 2025-11-27 02:47:10,402 | INFO     | ..............................
[2025-11-26 18:47:59] 2025-11-27 02:47:10,403 | INFO     | . Timing measurements:
[2025-11-26 18:47:59] 2025-11-27 02:47:10,403 | INFO     | . get job = 0 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,403 | INFO     | . initial setup = 4 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,403 | INFO     | . payload setup = 34 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,403 | INFO     | . stage-in = 0 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | . payload execution = 259 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | . stage-out = 1 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | . log creation = 0 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | ..............................
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898378580/pilotlog.txt
[2025-11-26 18:47:59] 2025-11-27 02:47:10,434 | WARNING  | 
[2025-11-26 18:47:59] [begin log extracts]
[2025-11-26 18:47:59] - Log from pilotlog.txt -
[2025-11-26 18:47:59] 2025-11-27 02:47:10,398 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898378580/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:47:59] 2025-11-27 02:47:10,399 | INFO     | extracted standard info from prmon json
[2025-11-26 18:47:59] 2025-11-27 02:47:10,400 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:47:59] 2025-11-27 02:47:10,400 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:47:59] 2025-11-27 02:47:10,400 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 18:47:59] 2025-11-27 02:47:10,400 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 18:47:59] 2025-11-27 02:47:10,401 | WARNING  | wrong length of table data, x=[1764211254.0, 1764211315.0, 1764211376.0, 1764211437.0], y=[1764.0, 343369.0, 626558.0, 372040.0] (must be same and length>=4)
[2025-11-26 18:47:59] 2025-11-27 02:47:10,402 | INFO     | could have reported an average CPU frequency of 1368 MHz (4 samples)
[2025-11-26 18:47:59] 2025-11-27 02:47:10,402 | INFO     | ..............................
[2025-11-26 18:47:59] 2025-11-27 02:47:10,403 | INFO     | . Timing measurements:
[2025-11-26 18:47:59] 2025-11-27 02:47:10,403 | INFO     | . get job = 0 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,403 | INFO     | . initial setup = 4 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,403 | INFO     | . payload setup = 34 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,403 | INFO     | . stage-in = 0 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | . payload execution = 259 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | . stage-out = 1 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | . log creation = 0 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | ..............................
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 18:47:59] 2025-11-27 02:47:10,404 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898378580/pilotlog.txt
[2025-11-26 18:47:59] [end log extracts]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,435 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 18:47:59] 2025-11-27 02:47:10,436 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 18:47:59] 2025-11-27 02:47:10,684 | INFO     | 
[2025-11-26 18:47:59] 2025-11-27 02:47:10,684 | INFO     | job summary report
[2025-11-26 18:47:59] 2025-11-27 02:47:10,684 | INFO     | --------------------------------------------------
[2025-11-26 18:47:59] 2025-11-27 02:47:10,684 | INFO     | PanDA job id: 6898378580
[2025-11-26 18:47:59] 2025-11-27 02:47:10,684 | INFO     | task id: 47556161
[2025-11-26 18:47:59] 2025-11-27 02:47:10,684 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 18:44:41,160 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 18:47:59] 2025-11-27 02:47:10,685 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 18:47:59] 2025-11-27 02:47:10,685 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:47:59] 2025-11-27 02:47:10,685 | INFO     | pilot state: failed 
[2025-11-26 18:47:59] 2025-11-27 02:47:10,685 | INFO     | transexitcode: 65
[2025-11-26 18:47:59] 2025-11-27 02:47:10,685 | INFO     | exeerrorcode: 65
[2025-11-26 18:47:59] 2025-11-27 02:47:10,685 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 18:47:59] 2025-11-27 02:47:10,685 | INFO     | exitcode: 65
[2025-11-26 18:47:59] 2025-11-27 02:47:10,685 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 18:47:59] 2025-11-27 02:47:10,685 | INFO     | cpuconsumptiontime: 81 s
[2025-11-26 18:47:59] 2025-11-27 02:47:10,685 | INFO     | nevents: 0
[2025-11-26 18:47:59] 2025-11-27 02:47:10,685 | INFO     | neventsw: 0
[2025-11-26 18:47:59] 2025-11-27 02:47:10,686 | INFO     | pid: 3033286
[2025-11-26 18:47:59] 2025-11-27 02:47:10,686 | INFO     | pgrp: 3033286
[2025-11-26 18:47:59] 2025-11-27 02:47:10,686 | INFO     | corecount: 12
[2025-11-26 18:47:59] 2025-11-27 02:47:10,686 | INFO     | event service: False
[2025-11-26 18:47:59] 2025-11-27 02:47:10,686 | INFO     | sizes: {0: 2283482, 1: 2284164, 2: 2284363, 13: 2284363, 24: 2284419, 27: 2284709, 35: 2284865, 297: 2310339, 298: 2310343, 300: 2314689, 301: 2314745, 440: 231521
[2025-11-26 18:47:59] 2025-11-27 02:47:10,686 | INFO     | --------------------------------------------------
[2025-11-26 18:47:59] 2025-11-27 02:47:10,686 | INFO     | 
[2025-11-26 18:47:59] 2025-11-27 02:47:10,686 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 18:47:59] 2025-11-27 02:47:10,814 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,814 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,814 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,814 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,814 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,814 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,815 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,815 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,815 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,815 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,815 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,815 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,815 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,815 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,815 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,815 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,816 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,816 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:47:59] 2025-11-27 02:47:10,816 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,816 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:47:59] 2025-11-27 02:47:10,816 | INFO     | job 6898378580 has completed (purged errors)
[2025-11-26 18:47:59] 2025-11-27 02:47:10,816 | INFO     | overall cleanup function is called
[2025-11-26 18:47:59] 2025-11-27 02:47:11,752 | INFO     | PID=3025917 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:47:59] 2025-11-27 02:47:11,752 | INFO     | .. there are 32 such processes running
[2025-11-26 18:47:59] 2025-11-27 02:47:11,832 | INFO     | --- collectZombieJob: --- 10, [3033286]
[2025-11-26 18:47:59] 2025-11-27 02:47:11,832 | INFO     | zombie collector waiting for pid 3033286
[2025-11-26 18:47:59] 2025-11-27 02:47:11,832 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:47:59] 2025-11-27 02:47:11,832 | INFO     | collected zombie processes
[2025-11-26 18:47:59] 2025-11-27 02:47:11,833 | INFO     | will attempt to kill all subprocesses of pid=3033286
[2025-11-26 18:47:59] 2025-11-27 02:47:12,358 | INFO     | process IDs to be killed: [3033286] (in reverse order)
[2025-11-26 18:47:59] 2025-11-27 02:47:12,501 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:47:59] 2025-11-27 02:47:12,502 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:47:59] 2025-11-27 02:47:12,517 | INFO     | did not find any defunct processes belonging to 3033286
[2025-11-26 18:47:59] 2025-11-27 02:47:12,530 | INFO     | did not find any defunct processes belonging to 3033286
[2025-11-26 18:47:59] 2025-11-27 02:47:12,531 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:47:59] 2025-11-27 02:47:12,531 | INFO     | ready for new job
[2025-11-26 18:47:59] 2025-11-27 02:47:12,531 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:47:59] 2025-11-27 02:47:12,533 | INFO     | ***************************************
[2025-11-26 18:47:59] 2025-11-27 02:47:12,533 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:47:59] 2025-11-27 02:47:12,533 | INFO     | ***************************************
[2025-11-26 18:47:59] 2025-11-27 02:47:12,533 | INFO     | 
[2025-11-26 18:47:59] 2025-11-27 02:47:12,537 | INFO     | architecture information:
[2025-11-26 18:47:59] 2025-11-27 02:47:12,547 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:47:59] 2025-11-27 02:47:12,707 | INFO     | cat /etc/os-release:
[2025-11-26 18:47:59] NAME="CentOS Linux"
[2025-11-26 18:47:59] VERSION="7 (Core)"
[2025-11-26 18:47:59] ID="centos"
[2025-11-26 18:47:59] ID_LIKE="rhel fedora"
[2025-11-26 18:47:59] VERSION_ID="7"
[2025-11-26 18:47:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:47:59] ANSI_COLOR="0;31"
[2025-11-26 18:47:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:47:59] HOME_URL="https://www.centos.org/"
[2025-11-26 18:47:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:47:59] 
[2025-11-26 18:47:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:47:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:47:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:47:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:47:59] 
[2025-11-26 18:47:59] 2025-11-27 02:47:12,708 | INFO     | ***************************************
[2025-11-26 18:47:59] 2025-11-27 02:47:13,211 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 18:47:59] 2025-11-27 02:47:13,326 | INFO     | sufficient remaining disk space (1058969485312 B)
[2025-11-26 18:47:59] 2025-11-27 02:47:13,327 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:47:59] 2025-11-27 02:47:13,327 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:47:59] 2025-11-27 02:47:13,327 | INFO     | update_server=False
[2025-11-26 18:47:59] 2025-11-27 02:47:13,327 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:47:59] 2025-11-27 02:47:13,330 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:47:59] 2025-11-27 02:47:13,330 | INFO     | aborting loop
[2025-11-26 18:47:59] 2025-11-27 02:47:13,594 | INFO     | all payload control threads have been joined
[2025-11-26 18:47:59] 2025-11-27 02:47:13,760 | INFO     | all data control threads have been joined
[2025-11-26 18:47:59] 2025-11-27 02:47:13,886 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:47:59] 2025-11-27 02:47:13,897 | INFO     | all job control threads have been joined
[2025-11-26 18:47:59] 2025-11-27 02:47:14,333 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:47:59] 2025-11-27 02:47:14,336 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:47:59] 2025-11-27 02:47:14,443 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:47:59] 2025-11-27 02:47:14,475 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:47:59] 2025-11-27 02:47:14,599 | INFO     | [payload] control thread has finished
[2025-11-26 18:47:59] 2025-11-27 02:47:14,769 | INFO     | [data] control thread has finished
[2025-11-26 18:47:59] 2025-11-27 02:47:14,845 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:47:59] 2025-11-27 02:47:14,903 | INFO     | [job] control thread has finished
[2025-11-26 18:47:59] 2025-11-27 02:47:14,968 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:47:59] 2025-11-27 02:47:15,069 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:47:59] 2025-11-27 02:47:15,485 | INFO     | [job] validate thread has finished
[2025-11-26 18:47:59] 2025-11-27 02:47:15,556 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:47:59] 2025-11-27 02:47:15,566 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:47:59] 2025-11-27 02:47:15,569 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:47:59] 2025-11-27 02:47:15,698 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:47:59] 2025-11-27 02:47:16,450 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:47:59] 2025-11-27 02:47:16,703 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:47:59] 2025-11-27 02:47:17,900 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:47:59] 2025-11-27 02:47:44,775 | INFO     | PID=3025917 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:47:59] 2025-11-27 02:47:44,775 | INFO     | .. there are 32 such processes running
[2025-11-26 18:47:59] 2025-11-27 02:47:44,775 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:47:59] 2025-11-27 02:47:44,775 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:47:59] 2025-11-27 02:47:44,776 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:47:59] 2025-11-27 02:47:53,190 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:47:59] 2025-11-27 02:47:53,861 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140609895585600)>', '<ExcThread(monitor, started 140609352353536)>']
[2025-11-26 18:47:59] 2025-11-27 02:47:54,835 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:47:59] 2025-11-27 02:47:54,835 | INFO     | [monitor] control thread has ended
[2025-11-26 18:47:59] 2025-11-27 02:47:58,887 | INFO     | all workflow threads have been joined
[2025-11-26 18:47:59] 2025-11-27 02:47:58,887 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:47:59] 2025-11-27 02:47:58,888 | INFO     | traces error code: 0
[2025-11-26 18:47:59] 2025-11-27 02:47:58,888 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:47:59] 2025-11-27 02:47:59,137 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:47:59] 2025-11-27 02:47:59,143 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:47:59] 2025-11-27 02:47:59,147 [wrapper] pilotpid: 3025917
[2025-11-26 18:47:59] 2025-11-27 02:47:59,155 [wrapper] Pilot exit status: 0
[2025-11-26 18:47:59] 2025-11-27 02:47:59,194 [wrapper] pandaids: 6898378580
[2025-11-26 18:47:59] 2025-11-27 02:47:59,320 [wrapper] cleanup supervisor_pilot 3025923 3025918
[2025-11-26 18:47:59] 2025-11-27 02:47:59,343 [wrapper] Test setup, not cleaning
[2025-11-26 18:47:59] 2025-11-27 02:47:59,352 [wrapper] apfmon messages muted
[2025-11-26 18:47:59] 2025-11-27 02:47:59,357 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:47:59] 2025-11-27 02:47:59,363 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:47:59]  *** Error codes and diagnostics ***
[2025-11-26 18:47:59]     "exeErrorCode": 65,
[2025-11-26 18:47:59]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 18:47:59]     "pilotErrorCode": 1305,
[2025-11-26 18:47:59]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 18:47:59]  *** Listing of results directory ***
[2025-11-26 18:47:59] total 402996
[2025-11-26 18:47:59] -rw-r--r--. 1 boinc boinc    576529 Nov 26 08:12 pilot3.tar.gz
[2025-11-26 18:47:59] -rw-r--r--. 1 boinc boinc      5112 Nov 26 08:35 queuedata.json
[2025-11-26 18:47:59] -rwx------. 1 boinc boinc     36292 Nov 26 08:35 runpilot2-wrapper.sh
[2025-11-26 18:47:59] -rw-r--r--. 1 boinc boinc       100 Nov 26 18:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:47:59] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 18:38 run_atlas
[2025-11-26 18:47:59] -rw-r--r--. 1 boinc boinc       105 Nov 26 18:38 job.xml
[2025-11-26 18:47:59] -rw-r--r--. 1 boinc boinc      6595 Nov 26 18:38 init_data.xml
[2025-11-26 18:47:59] -rw-r--r--. 2 boinc boinc 408403746 Nov 26 18:38 EVNT.47483658._002618.pool.root.1
[2025-11-26 18:47:59] -rw-r--r--. 2 boinc boinc     15847 Nov 26 18:38 start_atlas.sh
[2025-11-26 18:47:59] drwxrwx--x. 2 boinc boinc      4096 Nov 26 18:38 shared
[2025-11-26 18:47:59] -rw-r--r--. 2 boinc boinc    590103 Nov 26 18:38 input.tar.gz
[2025-11-26 18:47:59] -rw-r--r--. 1 boinc boinc         0 Nov 26 18:38 boinc_lockfile
[2025-11-26 18:47:59] -rw-r--r--. 1 boinc boinc      2784 Nov 26 18:38 pandaJob.out
[2025-11-26 18:47:59] -rw-------. 1 boinc boinc    991554 Nov 26 18:38 agis_schedconf.cvmfs.json
[2025-11-26 18:47:59] -rw-------. 1 boinc boinc   1516240 Nov 26 18:38 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:47:59] drwx------. 5 boinc boinc      4096 Nov 26 18:38 pilot3
[2025-11-26 18:47:59] -rw-r--r--. 1 boinc boinc       524 Nov 26 18:44 boinc_task_state.xml
[2025-11-26 18:47:59] -rw-------. 1 boinc boinc      1002 Nov 26 18:44 memory_monitor_summary.json
[2025-11-26 18:47:59] -rw-------. 1 boinc boinc     51450 Nov 26 18:44 log.47556161._006001.job.log.tgz.1
[2025-11-26 18:47:59] -rw-------. 1 boinc boinc        95 Nov 26 18:46 pilot_heartbeat.json
[2025-11-26 18:47:59] -rw-------. 1 boinc boinc     10337 Nov 26 18:47 heartbeat.json
[2025-11-26 18:47:59] -rw-r--r--. 1 boinc boinc      8192 Nov 26 18:47 boinc_mmap_file
[2025-11-26 18:47:59] -rw-r--r--. 1 boinc boinc        23 Nov 26 18:47 wrapper_checkpoint.txt
[2025-11-26 18:47:59] -rw-------. 1 boinc boinc      4823 Nov 26 18:47 pilotlog.txt
[2025-11-26 18:47:59] -rw-------. 1 boinc boinc    124470 Nov 26 18:47 log.47556161._006001.job.log.1
[2025-11-26 18:47:59] -rw-------. 1 boinc boinc       186 Nov 26 18:47 output.list
[2025-11-26 18:47:59] -rw-r--r--. 1 boinc boinc       620 Nov 26 18:47 runtime_log
[2025-11-26 18:47:59] -rw-------. 1 boinc boinc    194560 Nov 26 18:47 result.tar.gz
[2025-11-26 18:47:59] -rw-r--r--. 1 boinc boinc      8636 Nov 26 18:47 runtime_log.err
[2025-11-26 18:47:59] -rw-------. 1 boinc boinc       645 Nov 26 18:47 kexLDmpfXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuANKDm48GG9n.diag
[2025-11-26 18:47:59] -rw-r--r--. 1 boinc boinc     22685 Nov 26 18:47 stderr.txt
[2025-11-26 18:47:59] No HITS result produced
[2025-11-26 18:47:59]  *** Contents of shared directory: ***
[2025-11-26 18:48:00] total 399624
[2025-11-26 18:48:00] -rw-r--r--. 2 boinc boinc 408403746 Nov 26 18:38 ATLAS.root_0
[2025-11-26 18:48:00] -rw-r--r--. 2 boinc boinc     15847 Nov 26 18:38 start_atlas.sh
[2025-11-26 18:48:00] -rw-r--r--. 2 boinc boinc    590103 Nov 26 18:38 input.tar.gz
[2025-11-26 18:48:00] -rw-------. 1 boinc boinc    194560 Nov 26 18:47 result.tar.gz
18:48:01 (3022027): run_atlas exited; CPU time 86.731872
18:48:01 (3022027): called boinc_finish(0)

</stderr_txt>
]]>

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