Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:56:00 (930432): wrapper (7.7.26015): starting
19:56:00 (930432): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 19:56:00] Arguments: --nthreads 8
[2025-11-26 19:56:00] Threads: 8
[2025-11-26 19:56:00] Checking for CVMFS
[2025-11-26 19:56:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:56:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:56:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:56:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:56:02] 2.13.2.0 7884 37397 224156 153341 0 775 26736279 40960000 30292 16776704 0 386412056 99.728 275892374 47181 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 19:56:02] CVMFS is ok
[2025-11-26 19:56:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:56:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:56:02] Further information can be found at the LHC@home message board.
[2025-11-26 19:56:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:56:02] Checking for apptainer binary...
[2025-11-26 19:56:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:56:02] Running /usr/bin/apptainer --version
[2025-11-26 19:56:04] apptainer version 1.4.4-1.el9
[2025-11-26 19:56:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:56:06] c-208-38.aglt2.org
[2025-11-26 19:56:06] apptainer works
[2025-11-26 19:56:06] Set ATHENA_PROC_NUMBER=8
[2025-11-26 19:56:06] Set ATHENA_CORE_NUMBER=8
[2025-11-26 19:56:06] Starting ATLAS job with PandaID=6897487778
[2025-11-26 19:56:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:50:04]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:50:04] 2025-11-27 14:49:17,103 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:50:04] 2025-11-27 14:49:17,306 | INFO     | PID=943103 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 09:50:04] 2025-11-27 14:49:17,307 | INFO     | .. there are 29 such processes running
[2025-11-27 09:50:04] 2025-11-27 14:49:18,310 | INFO     | time since job start (49917s) is within the limit (172800.0s)
[2025-11-27 09:50:04] 2025-11-27 14:49:19,614 | INFO     | monitor loop #3026: job 0:6897487778 is in state 'finished'
[2025-11-27 09:50:04] 2025-11-27 14:49:19,614 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:50:04] 2025-11-27 14:49:20,322 | INFO     | time since job start (49919s) is within the limit (172800.0s)
[2025-11-27 09:50:04] 2025-11-27 14:49:22,125 | INFO     | monitor loop #3027: job 0:6897487778 is in state 'finished'
[2025-11-27 09:50:04] 2025-11-27 14:49:22,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:50:04] 2025-11-27 14:49:22,328 | INFO     | time since job start (49921s) is within the limit (172800.0s)
[2025-11-27 09:50:04] 2025-11-27 14:49:24,343 | INFO     | time since job start (49923s) is within the limit (172800.0s)
[2025-11-27 09:50:04] 2025-11-27 14:49:24,630 | INFO     | monitor loop #3028: job 0:6897487778 is in state 'finished'
[2025-11-27 09:50:04] 2025-11-27 14:49:24,630 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:50:04] 2025-11-27 14:49:26,356 | INFO     | time since job start (49925s) is within the limit (172800.0s)
[2025-11-27 09:50:04] 2025-11-27 14:49:27,167 | INFO     | monitor loop #3029: job 0:6897487778 is in state 'finished'
[2025-11-27 09:50:04] 2025-11-27 14:49:27,167 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:50:04] 2025-11-27 14:49:27,326 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 09:50:04] 2025-11-27 14:49:27,345 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3729.1877734375
[2025-11-27 09:50:04] 2025-11-27 14:49:27,415 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6897487778/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 09:50:04] 2025-11-27 14:49:27,415 | INFO     | extracted standard info from prmon json
[2025-11-27 09:50:04] 2025-11-27 14:49:27,415 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 09:50:04] 2025-11-27 14:49:27,415 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 09:50:04] 2025-11-27 14:49:27,447 | INFO     | fitting pss+swap vs Time
[2025-11-27 09:50:04] 2025-11-27 14:49:27,454 | INFO     | sum of square deviations: 168492242892.05786
[2025-11-27 09:50:04] 2025-11-27 14:49:27,494 | INFO     | sum of deviations: 3818614177145.488
[2025-11-27 09:50:04] 2025-11-27 14:49:27,495 | INFO     | mean x: 1764230063.6482842
[2025-11-27 09:50:04] 2025-11-27 14:49:27,495 | INFO     | mean y: 2896313.099264706
[2025-11-27 09:50:04] 2025-11-27 14:49:27,495 | INFO     | intersect: -39980629439.53453
[2025-11-27 09:50:04] 2025-11-27 14:49:27,495 | INFO     | chi2: 28.00583904788343
[2025-11-27 09:50:04] 2025-11-27 14:49:27,496 | INFO     | sum of square deviations: 165415152400.4858
[2025-11-27 09:50:04] 2025-11-27 14:49:27,554 | INFO     | sum of deviations: 4100518719706.724
[2025-11-27 09:50:04] 2025-11-27 14:49:27,554 | INFO     | mean x: 1764229911.1738594
[2025-11-27 09:50:04] 2025-11-27 14:49:27,554 | INFO     | mean y: 2910278.618988903
[2025-11-27 09:50:04] 2025-11-27 14:49:27,554 | INFO     | intersect: -43731038344.90321
[2025-11-27 09:50:04] 2025-11-27 14:49:27,555 | INFO     | chi2: 24.82217701115108
[2025-11-27 09:50:04] 2025-11-27 14:49:27,555 | INFO     | current chi2=24.82217701115108 (change=11.367850937402851 %)
[2025-11-27 09:50:04] 2025-11-27 14:49:27,555 | INFO     | right removable region: 810
[2025-11-27 09:50:04] 2025-11-27 14:49:27,555 | INFO     | sum of square deviations: 165413087550.4858
[2025-11-27 09:50:04] 2025-11-27 14:49:27,577 | INFO     | sum of deviations: 3463079116065.3335
[2025-11-27 09:50:04] 2025-11-27 14:49:27,577 | INFO     | mean x: 1764230216.1738594
[2025-11-27 09:50:04] 2025-11-27 14:49:27,577 | INFO     | mean y: 2913923.7139334157
[2025-11-27 09:50:04] 2025-11-27 14:49:27,577 | INFO     | intersect: -36932910853.13986
[2025-11-27 09:50:04] 2025-11-27 14:49:27,578 | INFO     | chi2: 22.596572047935734
[2025-11-27 09:50:04] 2025-11-27 14:49:27,578 | INFO     | current chi2=22.596572047935734 (change=19.31478285902849 %)
[2025-11-27 09:50:04] 2025-11-27 14:49:27,578 | INFO     | left removable region: 10
[2025-11-27 09:50:04] 2025-11-27 14:49:27,579 | INFO     | sum of square deviations: 158773876331.219
[2025-11-27 09:50:04] 2025-11-27 14:49:27,586 | INFO     | sum of deviations: 3485472834928.4146
[2025-11-27 09:50:04] 2025-11-27 14:49:27,586 | INFO     | mean x: 1764230185.73125
[2025-11-27 09:50:04] 2025-11-27 14:49:27,586 | INFO     | mean y: 2948290.81125
[2025-11-27 09:50:04] 2025-11-27 14:49:27,586 | INFO     | intersect: -38726196131.5316
[2025-11-27 09:50:04] 2025-11-27 14:49:27,587 | INFO     | chi2: 13.986897172830469
[2025-11-27 09:50:04] 2025-11-27 14:49:27,587 | INFO     | current memory leak: 21.95 B/s (using 800 data points, chi2=13.99)
[2025-11-27 09:50:04] 2025-11-27 14:49:27,588 | INFO     | could have reported an average CPU frequency of 3724 MHz (31 samples)
[2025-11-27 09:50:04] 2025-11-27 14:49:27,588 | INFO     | ..............................
[2025-11-27 09:50:04] 2025-11-27 14:49:27,588 | INFO     | . Timing measurements:
[2025-11-27 09:50:04] 2025-11-27 14:49:27,588 | INFO     | . get job = 0 s
[2025-11-27 09:50:04] 2025-11-27 14:49:27,588 | INFO     | . initial setup = 5 s
[2025-11-27 09:50:04] 2025-11-27 14:49:27,588 | INFO     | . payload setup = 52 s
[2025-11-27 09:50:04] 2025-11-27 14:49:27,588 | INFO     | . stage-in = 0 s
[2025-11-27 09:50:04] 2025-11-27 14:49:27,588 | INFO     | . payload execution = 49751 s
[2025-11-27 09:50:04] 2025-11-27 14:49:27,588 | INFO     | . stage-out = 6 s
[2025-11-27 09:50:04] 2025-11-27 14:49:27,588 | INFO     | . log creation = 2 s
[2025-11-27 09:50:04] 2025-11-27 14:49:27,588 | INFO     | ..............................
[2025-11-27 09:50:04] 2025-11-27 14:49:27,999 | INFO     | 
[2025-11-27 09:50:04] 2025-11-27 14:49:27,999 | INFO     | job summary report
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | --------------------------------------------------
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | PanDA job id: 6897487778
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | task id: 47556161
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | errors: (none)
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | pilot state: finished 
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | transexitcode: 0
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | exeerrorcode: 0
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | exeerrordiag: 
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | exitcode: 0
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | exitmsg: OK
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | cpuconsumptiontime: 144450 s
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | nevents: 1000
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | neventsw: 0
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | pid: 959601
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | pgrp: 959601
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | corecount: 8
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | event service: False
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | sizes: {0: 2283437, 1: 2284122, 2: 2284321, 12: 2284321, 23: 2284349, 34: 2284377, 35: 2284795, 44: 2284823, 49805: 2333145, 49812: 2342195, 49853: 2342385}
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | --------------------------------------------------
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | 
[2025-11-27 09:50:04] 2025-11-27 14:49:28,000 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-27 09:50:04] 2025-11-27 14:49:28,020 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,020 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,020 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | job 6897487778 has completed (purged errors)
[2025-11-27 09:50:04] 2025-11-27 14:49:28,021 | INFO     | overall cleanup function is called
[2025-11-27 09:50:04] 2025-11-27 14:49:29,038 | INFO     | --- collectZombieJob: --- 10, [959601]
[2025-11-27 09:50:04] 2025-11-27 14:49:29,038 | INFO     | zombie collector waiting for pid 959601
[2025-11-27 09:50:04] 2025-11-27 14:49:29,038 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 09:50:04] 2025-11-27 14:49:29,038 | INFO     | collected zombie processes
[2025-11-27 09:50:04] 2025-11-27 14:49:29,039 | INFO     | will attempt to kill all subprocesses of pid=959601
[2025-11-27 09:50:04] 2025-11-27 14:49:30,516 | INFO     | process IDs to be killed: [959601] (in reverse order)
[2025-11-27 09:50:04] 2025-11-27 14:49:30,802 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 09:50:04] 2025-11-27 14:49:30,803 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 09:50:04] 2025-11-27 14:49:30,829 | INFO     | did not find any defunct processes belonging to 959601
[2025-11-27 09:50:04] 2025-11-27 14:49:30,854 | INFO     | did not find any defunct processes belonging to 959601
[2025-11-27 09:50:04] 2025-11-27 14:49:30,856 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 09:50:04] 2025-11-27 14:49:30,856 | INFO     | ready for new job
[2025-11-27 09:50:04] 2025-11-27 14:49:30,856 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 09:50:04] 2025-11-27 14:49:30,859 | INFO     | ***************************************
[2025-11-27 09:50:04] 2025-11-27 14:49:30,859 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 09:50:04] 2025-11-27 14:49:30,860 | INFO     | ***************************************
[2025-11-27 09:50:04] 2025-11-27 14:49:30,860 | INFO     | 
[2025-11-27 09:50:04] 2025-11-27 14:49:30,865 | INFO     | architecture information:
[2025-11-27 09:50:04] 2025-11-27 14:49:30,866 | INFO     | executing command: cat /etc/os-release
[2025-11-27 09:50:04] 2025-11-27 14:49:31,006 | INFO     | cat /etc/os-release:
[2025-11-27 09:50:04] NAME="CentOS Linux"
[2025-11-27 09:50:04] VERSION="7 (Core)"
[2025-11-27 09:50:04] ID="centos"
[2025-11-27 09:50:04] ID_LIKE="rhel fedora"
[2025-11-27 09:50:04] VERSION_ID="7"
[2025-11-27 09:50:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 09:50:04] ANSI_COLOR="0;31"
[2025-11-27 09:50:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 09:50:04] HOME_URL="https://www.centos.org/"
[2025-11-27 09:50:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 09:50:04] 
[2025-11-27 09:50:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 09:50:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 09:50:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 09:50:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 09:50:04] 
[2025-11-27 09:50:04] 2025-11-27 14:49:31,006 | INFO     | ***************************************
[2025-11-27 09:50:04] 2025-11-27 14:49:31,509 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-27 09:50:04] 2025-11-27 14:49:31,671 | INFO     | sufficient remaining disk space (164630626304 B)
[2025-11-27 09:50:04] 2025-11-27 14:49:31,672 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 09:50:04] 2025-11-27 14:49:31,672 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 09:50:04] 2025-11-27 14:49:31,672 | INFO     | update_server=False
[2025-11-27 09:50:04] 2025-11-27 14:49:31,672 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 09:50:04] 2025-11-27 14:49:31,672 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:50:04] 2025-11-27 14:49:31,672 | INFO     | aborting loop
[2025-11-27 09:50:04] 2025-11-27 14:49:31,704 | INFO     | all job control threads have been joined
[2025-11-27 09:50:04] 2025-11-27 14:49:32,034 | INFO     | all payload control threads have been joined
[2025-11-27 09:50:04] 2025-11-27 14:49:32,381 | INFO     | all data control threads have been joined
[2025-11-27 09:50:04] 2025-11-27 14:49:32,397 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:50:04] 2025-11-27 14:49:32,678 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:50:04] 2025-11-27 14:49:32,679 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:50:04] 2025-11-27 14:49:32,710 | INFO     | [job] control thread has finished
[2025-11-27 09:50:04] 2025-11-27 14:49:32,750 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:50:04] 2025-11-27 14:49:33,042 | INFO     | [payload] control thread has finished
[2025-11-27 09:50:04] 2025-11-27 14:49:33,046 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:50:04] 2025-11-27 14:49:33,139 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:50:04] 2025-11-27 14:49:33,221 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:50:04] 2025-11-27 14:49:33,387 | INFO     | [data] control thread has finished
[2025-11-27 09:50:04] 2025-11-27 14:49:33,434 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:50:04] 2025-11-27 14:49:33,535 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:50:04] 2025-11-27 14:49:33,570 | INFO     | [job] validate thread has finished
[2025-11-27 09:50:04] 2025-11-27 14:49:33,677 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:50:04] 2025-11-27 14:49:33,756 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:50:04] 2025-11-27 14:49:33,774 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:50:04] 2025-11-27 14:49:33,904 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:50:04] 2025-11-27 14:49:34,404 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:50:04] 2025-11-27 14:49:37,686 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:50:04] 2025-11-27 14:49:47,856 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:50:04] 2025-11-27 14:49:49,534 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139640916817728)>', '<ExcThread(monitor, started 139640543614720)>']
[2025-11-27 09:50:04] 2025-11-27 14:49:54,584 | INFO     | all workflow threads have been joined
[2025-11-27 09:50:04] 2025-11-27 14:49:54,584 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:50:04] 2025-11-27 14:49:54,588 | INFO     | traces error code: 0
[2025-11-27 09:50:04] 2025-11-27 14:49:54,589 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:50:04] 2025-11-27 14:50:00,433 | INFO     | PID=943103 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 09:50:04] 2025-11-27 14:50:00,433 | INFO     | .. there are 29 such processes running
[2025-11-27 09:50:04] 2025-11-27 14:50:00,433 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:50:04] 2025-11-27 14:50:00,433 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:50:04] 2025-11-27 14:50:00,433 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:50:04] 2025-11-27 14:50:00,433 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:50:04] 2025-11-27 14:50:00,433 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 09:50:04] 2025-11-27 14:50:00,433 | INFO     | [monitor] control thread has ended
[2025-11-27 09:50:04] 2025-11-27 14:50:01,124 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:50:04] 2025-11-27 14:50:01,167 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:50:04] 2025-11-27 14:50:01,192 [wrapper] pilotpid: 943103
[2025-11-27 09:50:04] 2025-11-27 14:50:01,204 [wrapper] Pilot exit status: 0
[2025-11-27 09:50:04] 2025-11-27 14:50:01,326 [wrapper] pandaids: 6897487778
[2025-11-27 09:50:04] 2025-11-27 14:50:02,141 [wrapper] cleanup supervisor_pilot  316622 943106
[2025-11-27 09:50:04] 2025-11-27 14:50:02,185 [wrapper] Test setup, not cleaning
[2025-11-27 09:50:04] 2025-11-27 14:50:02,233 [wrapper] apfmon messages muted
[2025-11-27 09:50:04] 2025-11-27 14:50:02,273 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:50:04] 2025-11-27 14:50:02,311 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:50:04]  *** Error codes and diagnostics ***
[2025-11-27 09:50:04]     "exeErrorCode": 0,
[2025-11-27 09:50:04]     "exeErrorDiag": "",
[2025-11-27 09:50:04]     "pilotErrorCode": 0,
[2025-11-27 09:50:04]     "pilotErrorDiag": "",
[2025-11-27 09:50:04]  *** Listing of results directory ***
[2025-11-27 09:50:04] total 1324976
[2025-11-27 09:50:04] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 09:50:04] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 09:50:04] -rwx------. 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-27 09:50:04] -rw-r--r--. 1 boincer umatlas       100 Nov 26 19:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:50:04] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 19:55 run_atlas
[2025-11-27 09:50:04] -rw-r--r--. 1 boincer umatlas       105 Nov 26 19:55 job.xml
[2025-11-27 09:50:04] -rw-r--r--. 2 boincer umatlas 411832762 Nov 26 19:56 EVNT.47483658._002255.pool.root.1
[2025-11-27 09:50:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:56 start_atlas.sh
[2025-11-27 09:50:04] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 19:56 shared
[2025-11-27 09:50:04] -rw-r--r--. 2 boincer umatlas    590109 Nov 26 19:56 input.tar.gz
[2025-11-27 09:50:04] -rw-r--r--. 1 boincer umatlas         0 Nov 26 19:56 boinc_lockfile
[2025-11-27 09:50:04] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 19:56 pandaJob.out
[2025-11-27 09:50:04] -rw-r--r--. 1 boincer umatlas      2073 Nov 26 19:56 stderr.txt
[2025-11-27 09:50:04] -rw-------. 1 boincer umatlas        57 Nov 26 19:56 setup.sh.local
[2025-11-27 09:50:04] -rw-------. 1 boincer umatlas    991546 Nov 26 19:57 agis_schedconf.cvmfs.json
[2025-11-27 09:50:04] drwx------. 5 boincer umatlas      4096 Nov 26 19:57 pilot3
[2025-11-27 09:50:04] -rw-r--r--. 1 boincer umatlas       533 Nov 27 09:35 boinc_task_state.xml
[2025-11-27 09:50:04] -rw-------. 1 boincer umatlas 924328051 Nov 27 09:48 HITS.47556161._002384.pool.root.1
[2025-11-27 09:50:04] -rw-------. 1 boincer umatlas      1078 Nov 27 09:48 memory_monitor_summary.json
[2025-11-27 09:50:04] -rw-------. 1 boincer umatlas   1516240 Nov 27 09:48 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:50:04] -rw-------. 1 boincer umatlas   1992852 Nov 27 09:48 log.47556161._002384.job.log.tgz.1
[2025-11-27 09:50:04] -rw-------. 1 boincer umatlas        95 Nov 27 09:49 pilot_heartbeat.json
[2025-11-27 09:50:04] -rw-------. 1 boincer umatlas      8639 Nov 27 09:49 heartbeat.json
[2025-11-27 09:50:04] -rw-r--r--. 1 boincer umatlas      7175 Nov 27 09:49 init_data.xml
[2025-11-27 09:50:04] -rw-------. 1 boincer umatlas       892 Nov 27 09:50 pilotlog.txt
[2025-11-27 09:50:04] -rw-------. 1 boincer umatlas   6363737 Nov 27 09:50 log.47556161._002384.job.log.1
[2025-11-27 09:50:04] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 09:50 boinc_mmap_file
[2025-11-27 09:50:04] -rw-r--r--. 1 boincer umatlas        29 Nov 27 09:50 wrapper_checkpoint.txt
[2025-11-27 09:50:04] -rw-------. 1 boincer umatlas       353 Nov 27 09:50 output.list
[2025-11-27 09:50:04] -rw-r--r--. 1 boincer umatlas       620 Nov 27 09:50 runtime_log
[2025-11-27 09:50:04] -rw-------. 1 boincer umatlas   8376320 Nov 27 09:50 result.tar.gz
[2025-11-27 09:50:04] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 09:50 runtime_log.err
[2025-11-27 09:50:04] -rw-------. 1 boincer umatlas       666 Nov 27 09:50 GDBLDmMXBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYWMKDmirt4bn.diag
[2025-11-27 09:50:04] HITS file was successfully produced:
[2025-11-27 09:50:04] -rw-------. 1 boincer umatlas 924328051 Nov 27 09:48 shared/HITS.pool.root.1
[2025-11-27 09:50:04]  *** Contents of shared directory: ***
[2025-11-27 09:50:04] total 1313636
[2025-11-27 09:50:04] -rw-r--r--. 2 boincer umatlas 411832762 Nov 26 19:56 ATLAS.root_0
[2025-11-27 09:50:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:56 start_atlas.sh
[2025-11-27 09:50:04] -rw-r--r--. 2 boincer umatlas    590109 Nov 26 19:56 input.tar.gz
[2025-11-27 09:50:04] -rw-------. 1 boincer umatlas 924328051 Nov 27 09:48 HITS.pool.root.1
[2025-11-27 09:50:04] -rw-------. 1 boincer umatlas   8376320 Nov 27 09:50 result.tar.gz
09:50:05 (930432): run_atlas exited; CPU time 145159.248793
09:50:05 (930432): called boinc_finish(0)

</stderr_txt>
]]>

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