Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:47:05 (1322516): wrapper (7.7.26015): starting
19:47:05 (1322516): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 19:47:05] Arguments: --nthreads 8
[2025-11-26 19:47:05] Threads: 8
[2025-11-26 19:47:05] Checking for CVMFS
[2025-11-26 19:47:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:47:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:47:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:47:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:47:07] 2.13.2.0 8058 36577 304736 153341 3 738 34920279 40960000 12824 16776704 0 39313053 99.722 26980332 35450 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 19:47:07] CVMFS is ok
[2025-11-26 19:47:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:47:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:47:07] Further information can be found at the LHC@home message board.
[2025-11-26 19:47:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:47:07] Checking for apptainer binary...
[2025-11-26 19:47:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:47:07] Running /usr/bin/apptainer --version
[2025-11-26 19:47:07] apptainer version 1.4.4-1.el9
[2025-11-26 19:47:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:47:07] c-210-33-3.aglt2.org
[2025-11-26 19:47:07] apptainer works
[2025-11-26 19:47:07] Set ATHENA_PROC_NUMBER=8
[2025-11-26 19:47:07] Set ATHENA_CORE_NUMBER=8
[2025-11-26 19:47:07] Starting ATLAS job with PandaID=6896990408
[2025-11-26 19:47:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:45:39]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:45:39] 2025-11-27 23:45:00,458 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2885.824785714286
[2025-11-27 18:45:39] 2025-11-27 23:45:00,476 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896990408/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:45:39] 2025-11-27 23:45:00,477 | INFO     | extracted standard info from prmon json
[2025-11-27 18:45:39] 2025-11-27 23:45:00,477 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:45:39] 2025-11-27 23:45:00,477 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:45:39] 2025-11-27 23:45:00,533 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:45:39] 2025-11-27 23:45:00,539 | INFO     | sum of square deviations: 766322112082.7867
[2025-11-27 18:45:39] 2025-11-27 23:45:00,637 | INFO     | PID=1328010 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:45:39] 2025-11-27 23:45:00,638 | INFO     | .. there are 11 such processes running
[2025-11-27 18:45:39] 2025-11-27 23:45:00,703 | INFO     | sum of deviations: 5236841353585.471
[2025-11-27 18:45:39] 2025-11-27 23:45:00,703 | INFO     | mean x: 1764245829.762574
[2025-11-27 18:45:39] 2025-11-27 23:45:00,704 | INFO     | mean y: 2925079.0170118343
[2025-11-27 18:45:39] 2025-11-27 23:45:00,704 | INFO     | intersect: -12053461358.900692
[2025-11-27 18:45:39] 2025-11-27 23:45:00,714 | INFO     | chi2: 15.008754029758952
[2025-11-27 18:45:39] 2025-11-27 23:45:00,716 | INFO     | sum of square deviations: 757853154246.157
[2025-11-27 18:45:39] 2025-11-27 23:45:00,821 | INFO     | sum of deviations: 5681265043857.658
[2025-11-27 18:45:39] 2025-11-27 23:45:00,826 | INFO     | mean x: 1764245677.277654
[2025-11-27 18:45:39] 2025-11-27 23:45:00,826 | INFO     | mean y: 2933079.613214551
[2025-11-27 18:45:39] 2025-11-27 23:45:00,826 | INFO     | intersect: -13222778575.654123
[2025-11-27 18:45:39] 2025-11-27 23:45:00,828 | INFO     | chi2: 12.047654464355338
[2025-11-27 18:45:39] 2025-11-27 23:45:00,828 | INFO     | current chi2=12.047654464355338 (change=19.729149798393834 %)
[2025-11-27 18:45:39] 2025-11-27 23:45:00,828 | INFO     | right removable region: 1346
[2025-11-27 18:45:39] 2025-11-27 23:45:00,835 | INFO     | sum of square deviations: 757849721036.5992
[2025-11-27 18:45:39] 2025-11-27 23:45:00,922 | INFO     | sum of deviations: 4674827856069.432
[2025-11-27 18:45:39] 2025-11-27 23:45:00,923 | INFO     | mean x: 1764245982.2783964
[2025-11-27 18:45:39] 2025-11-27 23:45:00,923 | INFO     | mean y: 2935194.7535263547
[2025-11-27 18:45:39] 2025-11-27 23:45:00,923 | INFO     | intersect: -10879890296.865704
[2025-11-27 18:45:39] 2025-11-27 23:45:00,925 | INFO     | chi2: 10.639837900964485
[2025-11-27 18:45:39] 2025-11-27 23:45:00,925 | INFO     | current chi2=10.639837900964485 (change=29.109119385472624 %)
[2025-11-27 18:45:39] 2025-11-27 23:45:00,932 | INFO     | sum of square deviations: 749439982327.2367
[2025-11-27 18:45:39] 2025-11-27 23:45:00,993 | INFO     | monitor loop #5202: job 0:6896990408 is in state 'finished'
[2025-11-27 18:45:39] 2025-11-27 23:45:00,994 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:45:39] 2025-11-27 23:45:01,004 | INFO     | sum of deviations: 4172141964063.487
[2025-11-27 18:45:39] 2025-11-27 23:45:01,005 | INFO     | mean x: 1764246134.7943368
[2025-11-27 18:45:39] 2025-11-27 23:45:01,005 | INFO     | mean y: 2944310.802533532
[2025-11-27 18:45:39] 2025-11-27 23:45:01,005 | INFO     | intersect: -9818636479.503204
[2025-11-27 18:45:39] 2025-11-27 23:45:01,009 | INFO     | chi2: 7.275514107754476
[2025-11-27 18:45:39] 2025-11-27 23:45:01,010 | INFO     | current chi2=7.275514107754476 (change=31.620066250304795 %)
[2025-11-27 18:45:39] 2025-11-27 23:45:01,011 | INFO     | sum of square deviations: 741092826765.425
[2025-11-27 18:45:39] 2025-11-27 23:45:01,071 | INFO     | sum of deviations: 3867837188517.594
[2025-11-27 18:45:39] 2025-11-27 23:45:01,072 | INFO     | mean x: 1764246287.3089006
[2025-11-27 18:45:39] 2025-11-27 23:45:01,072 | INFO     | mean y: 2949868.2939416603
[2025-11-27 18:45:39] 2025-11-27 23:45:01,072 | INFO     | intersect: -9204827016.473255
[2025-11-27 18:45:39] 2025-11-27 23:45:01,073 | INFO     | chi2: 6.12157287446006
[2025-11-27 18:45:39] 2025-11-27 23:45:01,073 | INFO     | current chi2=6.12157287446006 (change=15.860614331906909 %)
[2025-11-27 18:45:39] 2025-11-27 23:45:01,074 | INFO     | left removable region: 30
[2025-11-27 18:45:39] 2025-11-27 23:45:01,075 | INFO     | sum of square deviations: 706718505564.4915
[2025-11-27 18:45:39] 2025-11-27 23:45:01,135 | INFO     | sum of deviations: 4083828803245.6626
[2025-11-27 18:45:39] 2025-11-27 23:45:01,135 | INFO     | mean x: 1764246561.8404255
[2025-11-27 18:45:39] 2025-11-27 23:45:01,136 | INFO     | mean y: 2966232.4460486323
[2025-11-27 18:45:39] 2025-11-27 23:45:01,136 | INFO     | intersect: -10191872120.507736
[2025-11-27 18:45:39] 2025-11-27 23:45:01,137 | INFO     | chi2: 2.1117508996517906
[2025-11-27 18:45:39] 2025-11-27 23:45:01,137 | INFO     | current memory leak: 5.78 B/s (using 1316 data points, chi2=2.11)
[2025-11-27 18:45:39] 2025-11-27 23:45:01,143 | INFO     | could have reported an average CPU frequency of 2745 MHz (48 samples)
[2025-11-27 18:45:39] 2025-11-27 23:45:01,143 | INFO     | ..............................
[2025-11-27 18:45:39] 2025-11-27 23:45:01,143 | INFO     | . Timing measurements:
[2025-11-27 18:45:39] 2025-11-27 23:45:01,143 | INFO     | . get job = 0 s
[2025-11-27 18:45:39] 2025-11-27 23:45:01,143 | INFO     | . initial setup = 4 s
[2025-11-27 18:45:39] 2025-11-27 23:45:01,143 | INFO     | . payload setup = 44 s
[2025-11-27 18:45:39] 2025-11-27 23:45:01,143 | INFO     | . stage-in = 0 s
[2025-11-27 18:45:39] 2025-11-27 23:45:01,143 | INFO     | . payload execution = 82468 s
[2025-11-27 18:45:39] 2025-11-27 23:45:01,143 | INFO     | . stage-out = 7 s
[2025-11-27 18:45:39] 2025-11-27 23:45:01,143 | INFO     | . log creation = 2 s
[2025-11-27 18:45:39] 2025-11-27 23:45:01,143 | INFO     | ..............................
[2025-11-27 18:45:39] 2025-11-27 23:45:01,330 | INFO     | 
[2025-11-27 18:45:39] 2025-11-27 23:45:01,330 | INFO     | job summary report
[2025-11-27 18:45:39] 2025-11-27 23:45:01,330 | INFO     | --------------------------------------------------
[2025-11-27 18:45:39] 2025-11-27 23:45:01,331 | INFO     | PanDA job id: 6896990408
[2025-11-27 18:45:39] 2025-11-27 23:45:01,331 | INFO     | task id: 47556161
[2025-11-27 18:45:39] 2025-11-27 23:45:01,331 | INFO     | errors: (none)
[2025-11-27 18:45:39] 2025-11-27 23:45:01,331 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:45:39] 2025-11-27 23:45:01,331 | INFO     | pilot state: finished 
[2025-11-27 18:45:39] 2025-11-27 23:45:01,331 | INFO     | transexitcode: 0
[2025-11-27 18:45:39] 2025-11-27 23:45:01,331 | INFO     | exeerrorcode: 0
[2025-11-27 18:45:39] 2025-11-27 23:45:01,331 | INFO     | exeerrordiag: 
[2025-11-27 18:45:39] 2025-11-27 23:45:01,331 | INFO     | exitcode: 0
[2025-11-27 18:45:39] 2025-11-27 23:45:01,331 | INFO     | exitmsg: OK
[2025-11-27 18:45:39] 2025-11-27 23:45:01,332 | INFO     | cpuconsumptiontime: 254410 s
[2025-11-27 18:45:39] 2025-11-27 23:45:01,332 | INFO     | nevents: 1000
[2025-11-27 18:45:39] 2025-11-27 23:45:01,332 | INFO     | neventsw: 0
[2025-11-27 18:45:39] 2025-11-27 23:45:01,332 | INFO     | pid: 1342840
[2025-11-27 18:45:39] 2025-11-27 23:45:01,332 | INFO     | pgrp: 1342840
[2025-11-27 18:45:39] 2025-11-27 23:45:01,332 | INFO     | corecount: 8
[2025-11-27 18:45:39] 2025-11-27 23:45:01,332 | INFO     | event service: False
[2025-11-27 18:45:39] 2025-11-27 23:45:01,332 | INFO     | sizes: {0: 2284038, 1: 2284122, 2: 2284321, 13: 2284321, 23: 2284377, 29: 2284667, 34: 2284823, 82515: 2348971, 82516: 2348970, 82524: 2358020, 82525: 2358076, 825
[2025-11-27 18:45:39] 2025-11-27 23:45:01,332 | INFO     | --------------------------------------------------
[2025-11-27 18:45:39] 2025-11-27 23:45:01,333 | INFO     | 
[2025-11-27 18:45:39] 2025-11-27 23:45:01,333 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 18:45:39] 2025-11-27 23:45:01,392 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,392 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,393 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,393 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,393 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,393 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,393 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,393 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,393 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,393 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,393 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,393 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,393 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,393 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,393 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,393 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,394 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,394 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:45:39] 2025-11-27 23:45:01,394 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,394 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:45:39] 2025-11-27 23:45:01,414 | INFO     | job 6896990408 has completed (purged errors)
[2025-11-27 18:45:39] 2025-11-27 23:45:01,415 | INFO     | overall cleanup function is called
[2025-11-27 18:45:39] 2025-11-27 23:45:02,491 | INFO     | --- collectZombieJob: --- 10, [1342840]
[2025-11-27 18:45:39] 2025-11-27 23:45:02,492 | INFO     | zombie collector waiting for pid 1342840
[2025-11-27 18:45:39] 2025-11-27 23:45:02,492 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:45:39] 2025-11-27 23:45:02,492 | INFO     | collected zombie processes
[2025-11-27 18:45:39] 2025-11-27 23:45:02,492 | INFO     | will attempt to kill all subprocesses of pid=1342840
[2025-11-27 18:45:39] 2025-11-27 23:45:03,318 | INFO     | process IDs to be killed: [1342840] (in reverse order)
[2025-11-27 18:45:39] 2025-11-27 23:45:03,538 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:45:39] 2025-11-27 23:45:03,538 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:45:39] 2025-11-27 23:45:03,560 | INFO     | did not find any defunct processes belonging to 1342840
[2025-11-27 18:45:39] 2025-11-27 23:45:03,583 | INFO     | did not find any defunct processes belonging to 1342840
[2025-11-27 18:45:39] 2025-11-27 23:45:03,584 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:45:39] 2025-11-27 23:45:03,584 | INFO     | ready for new job
[2025-11-27 18:45:39] 2025-11-27 23:45:03,584 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:45:39] 2025-11-27 23:45:03,595 | INFO     | ***************************************
[2025-11-27 18:45:39] 2025-11-27 23:45:03,595 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:45:39] 2025-11-27 23:45:03,595 | INFO     | ***************************************
[2025-11-27 18:45:39] 2025-11-27 23:45:03,595 | INFO     | 
[2025-11-27 18:45:39] 2025-11-27 23:45:03,602 | INFO     | architecture information:
[2025-11-27 18:45:39] 2025-11-27 23:45:03,611 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:45:39] 2025-11-27 23:45:03,653 | INFO     | cat /etc/os-release:
[2025-11-27 18:45:39] NAME="CentOS Linux"
[2025-11-27 18:45:39] VERSION="7 (Core)"
[2025-11-27 18:45:39] ID="centos"
[2025-11-27 18:45:39] ID_LIKE="rhel fedora"
[2025-11-27 18:45:39] VERSION_ID="7"
[2025-11-27 18:45:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:45:39] ANSI_COLOR="0;31"
[2025-11-27 18:45:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:45:39] HOME_URL="https://www.centos.org/"
[2025-11-27 18:45:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:45:39] 
[2025-11-27 18:45:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:45:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:45:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:45:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:45:39] 
[2025-11-27 18:45:39] 2025-11-27 23:45:03,653 | INFO     | ***************************************
[2025-11-27 18:45:39] 2025-11-27 23:45:04,157 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 18:45:39] 2025-11-27 23:45:04,204 | INFO     | sufficient remaining disk space (70333235200 B)
[2025-11-27 18:45:39] 2025-11-27 23:45:04,204 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:45:39] 2025-11-27 23:45:04,204 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:45:39] 2025-11-27 23:45:04,205 | INFO     | update_server=False
[2025-11-27 18:45:39] 2025-11-27 23:45:04,205 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:45:39] 2025-11-27 23:45:04,205 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:45:39] 2025-11-27 23:45:04,238 | INFO     | all job control threads have been joined
[2025-11-27 18:45:39] 2025-11-27 23:45:04,507 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:45:39] 2025-11-27 23:45:04,508 | INFO     | aborting loop
[2025-11-27 18:45:39] 2025-11-27 23:45:04,686 | INFO     | all payload control threads have been joined
[2025-11-27 18:45:39] 2025-11-27 23:45:05,190 | INFO     | all data control threads have been joined
[2025-11-27 18:45:39] 2025-11-27 23:45:05,211 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:45:39] 2025-11-27 23:45:05,245 | INFO     | [job] control thread has finished
[2025-11-27 18:45:39] 2025-11-27 23:45:05,275 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:45:39] 2025-11-27 23:45:05,338 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:45:39] 2025-11-27 23:45:05,513 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:45:39] 2025-11-27 23:45:05,692 | INFO     | [payload] control thread has finished
[2025-11-27 18:45:39] 2025-11-27 23:45:05,788 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:45:39] 2025-11-27 23:45:05,898 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:45:39] 2025-11-27 23:45:05,979 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:45:39] 2025-11-27 23:45:06,135 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:45:39] 2025-11-27 23:45:06,196 | INFO     | [data] control thread has finished
[2025-11-27 18:45:39] 2025-11-27 23:45:06,212 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:45:39] 2025-11-27 23:45:06,347 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:45:39] 2025-11-27 23:45:06,664 | INFO     | [job] validate thread has finished
[2025-11-27 18:45:39] 2025-11-27 23:45:06,672 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:45:39] 2025-11-27 23:45:06,676 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:45:39] 2025-11-27 23:45:07,353 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:45:39] 2025-11-27 23:45:09,798 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:45:39] 2025-11-27 23:45:31,558 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:45:39] 2025-11-27 23:45:33,120 | INFO     | PID=1328010 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:45:39] 2025-11-27 23:45:33,120 | INFO     | .. there are 11 such processes running
[2025-11-27 18:45:39] 2025-11-27 23:45:33,121 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:45:39] 2025-11-27 23:45:33,122 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:45:39] 2025-11-27 23:45:33,122 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:45:39] 2025-11-27 23:45:33,607 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140192676202304)>', '<ExcThread(monitor, started 140192027506432)>']
[2025-11-27 18:45:39] 2025-11-27 23:45:34,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:45:39] 2025-11-27 23:45:34,128 | INFO     | [monitor] control thread has ended
[2025-11-27 18:45:39] 2025-11-27 23:45:38,633 | INFO     | all workflow threads have been joined
[2025-11-27 18:45:39] 2025-11-27 23:45:38,634 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:45:39] 2025-11-27 23:45:38,634 | INFO     | traces error code: 0
[2025-11-27 18:45:39] 2025-11-27 23:45:38,634 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:45:39] 2025-11-27 23:45:38,923 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:45:39] 2025-11-27 23:45:38,925 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:45:39] 2025-11-27 23:45:38,928 [wrapper] pilotpid: 1328010
[2025-11-27 18:45:39] 2025-11-27 23:45:38,931 [wrapper] Pilot exit status: 0
[2025-11-27 18:45:39] 2025-11-27 23:45:38,985 [wrapper] pandaids: 6896990408
[2025-11-27 18:45:39] 2025-11-27 23:45:39,263 [wrapper] cleanup supervisor_pilot 3411725 1328011
[2025-11-27 18:45:39] 2025-11-27 23:45:39,289 [wrapper] Test setup, not cleaning
[2025-11-27 18:45:39] 2025-11-27 23:45:39,304 [wrapper] apfmon messages muted
[2025-11-27 18:45:39] 2025-11-27 23:45:39,308 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:45:39] 2025-11-27 23:45:39,311 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:45:39]  *** Error codes and diagnostics ***
[2025-11-27 18:45:39]     "exeErrorCode": 0,
[2025-11-27 18:45:39]     "exeErrorDiag": "",
[2025-11-27 18:45:39]     "pilotErrorCode": 0,
[2025-11-27 18:45:39]     "pilotErrorDiag": "",
[2025-11-27 18:45:39]  *** Listing of results directory ***
[2025-11-27 18:45:39] total 1326508
[2025-11-27 18:45:39] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 18:45:39] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 18:45:39] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-27 18:45:39] -rw-r--r--. 1 boincer umatlas       100 Nov 26 19:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:45:39] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 19:47 run_atlas
[2025-11-27 18:45:39] -rw-r--r--. 1 boincer umatlas       105 Nov 26 19:47 job.xml
[2025-11-27 18:45:39] -rw-r--r--. 2 boincer umatlas 412192029 Nov 26 19:47 EVNT.47483658._002172.pool.root.1
[2025-11-27 18:45:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:47 start_atlas.sh
[2025-11-27 18:45:39] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 19:47 shared
[2025-11-27 18:45:39] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 19:47 input.tar.gz
[2025-11-27 18:45:39] -rw-r--r--. 1 boincer umatlas         0 Nov 26 19:47 boinc_lockfile
[2025-11-27 18:45:39] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 19:47 pandaJob.out
[2025-11-27 18:45:39] -rw-------. 1 boincer umatlas        57 Nov 26 19:47 setup.sh.local
[2025-11-27 18:45:39] -rw-------. 1 boincer umatlas    991546 Nov 26 19:48 agis_schedconf.cvmfs.json
[2025-11-27 18:45:39] drwx------. 5 boincer umatlas      4096 Nov 26 19:48 pilot3
[2025-11-27 18:45:39] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:27 boinc_task_state.xml
[2025-11-27 18:45:39] -rw-r--r--. 1 boincer umatlas      6843 Nov 27 18:37 init_data.xml
[2025-11-27 18:45:39] -rw-------. 1 boincer umatlas 915813545 Nov 27 18:43 HITS.47556161._001557.pool.root.1
[2025-11-27 18:45:39] -rw-------. 1 boincer umatlas      1058 Nov 27 18:44 memory_monitor_summary.json
[2025-11-27 18:45:39] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:44 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:45:39] -rw-------. 1 boincer umatlas   2423817 Nov 27 18:44 log.47556161._001557.job.log.tgz.1
[2025-11-27 18:45:39] -rw-------. 1 boincer umatlas      8624 Nov 27 18:45 heartbeat.json
[2025-11-27 18:45:39] -rw-------. 1 boincer umatlas        95 Nov 27 18:45 pilot_heartbeat.json
[2025-11-27 18:45:39] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 18:45 boinc_mmap_file
[2025-11-27 18:45:39] -rw-r--r--. 1 boincer umatlas        29 Nov 27 18:45 wrapper_checkpoint.txt
[2025-11-27 18:45:39] -rw-------. 1 boincer umatlas      4824 Nov 27 18:45 pilotlog.txt
[2025-11-27 18:45:39] -rw-------. 1 boincer umatlas  10785524 Nov 27 18:45 log.47556161._001557.job.log.1
[2025-11-27 18:45:39] -rw-------. 1 boincer umatlas       353 Nov 27 18:45 output.list
[2025-11-27 18:45:39] -rw-r--r--. 1 boincer umatlas       620 Nov 27 18:45 runtime_log
[2025-11-27 18:45:39] -rw-------. 1 boincer umatlas  13230080 Nov 27 18:45 result.tar.gz
[2025-11-27 18:45:39] -rw-r--r--. 1 boincer umatlas      9353 Nov 27 18:45 runtime_log.err
[2025-11-27 18:45:39] -rw-------. 1 boincer umatlas       662 Nov 27 18:45 1hHLDmSWBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0SMKDm6RIYMo.diag
[2025-11-27 18:45:39] -rw-r--r--. 1 boincer umatlas     21489 Nov 27 18:45 stderr.txt
[2025-11-27 18:45:39] HITS file was successfully produced:
[2025-11-27 18:45:39] -rw-------. 1 boincer umatlas 915813545 Nov 27 18:43 shared/HITS.pool.root.1
[2025-11-27 18:45:39]  *** Contents of shared directory: ***
[2025-11-27 18:45:39] total 1310404
[2025-11-27 18:45:39] -rw-r--r--. 2 boincer umatlas 412192029 Nov 26 19:47 ATLAS.root_0
[2025-11-27 18:45:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:47 start_atlas.sh
[2025-11-27 18:45:39] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 19:47 input.tar.gz
[2025-11-27 18:45:39] -rw-------. 1 boincer umatlas 915813545 Nov 27 18:43 HITS.pool.root.1
[2025-11-27 18:45:39] -rw-------. 1 boincer umatlas  13230080 Nov 27 18:45 result.tar.gz
18:45:41 (1322516): run_atlas exited; CPU time 255718.074874
18:45:41 (1322516): called boinc_finish(0)

</stderr_txt>
]]>

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