Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:31:14 (434618): wrapper (7.7.26015): starting
22:31:14 (434618): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 22:31:14] Arguments: --nthreads 8
[2025-11-26 22:31:14] Threads: 8
[2025-11-26 22:31:14] Checking for CVMFS
[2025-11-26 22:31:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 22:31:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 22:31:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 22:31:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 22:31:17] 2.13.3.0 9438 30931 269168 153345 1 392 38699284 40960001 85004 16776704 0 437945374 99.755 267351785 47637 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 22:31:17] CVMFS is ok
[2025-11-26 22:31:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 22:31:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 22:31:17] Further information can be found at the LHC@home message board.
[2025-11-26 22:31:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 22:31:17] Checking for apptainer binary...
[2025-11-26 22:31:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 22:31:17] Running /usr/bin/apptainer --version
[2025-11-26 22:31:17] apptainer version 1.4.4-1.el9
[2025-11-26 22:31:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 22:31:18] c8-7-3.aglt2.org
[2025-11-26 22:31:18] apptainer works
[2025-11-26 22:31:18] Set ATHENA_PROC_NUMBER=8
[2025-11-26 22:31:18] Set ATHENA_CORE_NUMBER=8
[2025-11-26 22:31:18] Starting ATLAS job with PandaID=6898039649
[2025-11-26 22:31:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 08:38:13]  *** The last 200 lines of the pilot log: ***
[2025-11-27 08:38:13] 2025-11-27 13:37:18,102 | INFO     | monitor loop #1853: job 0:6898039649 is in state 'finished'
[2025-11-27 08:38:13] 2025-11-27 13:37:18,102 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:38:13] 2025-11-27 13:37:19,619 | INFO     | PID=462146 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 08:38:13] 2025-11-27 13:37:19,620 | INFO     | .. there are 127 such processes running
[2025-11-27 08:38:13] 2025-11-27 13:37:20,607 | INFO     | monitor loop #1854: job 0:6898039649 is in state 'finished'
[2025-11-27 08:38:13] 2025-11-27 13:37:20,607 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:38:13] 2025-11-27 13:37:20,621 | INFO     | time since job start (36262s) is within the limit (172800.0s)
[2025-11-27 08:38:13] 2025-11-27 13:37:22,628 | INFO     | time since job start (36264s) is within the limit (172800.0s)
[2025-11-27 08:38:13] 2025-11-27 13:37:23,114 | INFO     | monitor loop #1855: job 0:6898039649 is in state 'finished'
[2025-11-27 08:38:13] 2025-11-27 13:37:23,126 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:38:13] 2025-11-27 13:37:24,665 | INFO     | time since job start (36266s) is within the limit (172800.0s)
[2025-11-27 08:38:13] 2025-11-27 13:37:25,650 | INFO     | monitor loop #1856: job 0:6898039649 is in state 'finished'
[2025-11-27 08:38:13] 2025-11-27 13:37:25,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:38:13] 2025-11-27 13:37:26,677 | INFO     | time since job start (36268s) is within the limit (172800.0s)
[2025-11-27 08:38:13] 2025-11-27 13:37:28,162 | INFO     | monitor loop #1857: job 0:6898039649 is in state 'finished'
[2025-11-27 08:38:13] 2025-11-27 13:37:28,162 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:38:13] 2025-11-27 13:37:28,684 | INFO     | time since job start (36270s) is within the limit (172800.0s)
[2025-11-27 08:38:13] 2025-11-27 13:37:29,624 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 08:38:13] 2025-11-27 13:37:29,632 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.134640625
[2025-11-27 08:38:13] 2025-11-27 13:37:29,654 | INFO     | using path: /tmp/boinchome/slots/13/PanDA_Pilot-6898039649/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 08:38:13] 2025-11-27 13:37:29,654 | INFO     | extracted standard info from prmon json
[2025-11-27 08:38:13] 2025-11-27 13:37:29,654 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 08:38:13] 2025-11-27 13:37:29,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 08:38:13] 2025-11-27 13:37:29,660 | INFO     | fitting pss+swap vs Time
[2025-11-27 08:38:13] 2025-11-27 13:37:29,660 | INFO     | sum of square deviations: 64008282464.49071
[2025-11-27 08:38:13] 2025-11-27 13:37:29,665 | INFO     | sum of deviations: 261426082771.14624
[2025-11-27 08:38:13] 2025-11-27 13:37:29,665 | INFO     | mean x: 1764232554.2774959
[2025-11-27 08:38:13] 2025-11-27 13:37:29,665 | INFO     | mean y: 2742769.20642978
[2025-11-27 08:38:13] 2025-11-27 13:37:29,665 | INFO     | intersect: -7202831072.240796
[2025-11-27 08:38:13] 2025-11-27 13:37:29,665 | INFO     | chi2: 31.567987986285136
[2025-11-27 08:38:13] 2025-11-27 13:37:29,666 | INFO     | sum of square deviations: 62397626713.76091
[2025-11-27 08:38:13] 2025-11-27 13:37:29,670 | INFO     | sum of deviations: 445891817273.2287
[2025-11-27 08:38:13] 2025-11-27 13:37:29,670 | INFO     | mean x: 1764232401.788396
[2025-11-27 08:38:13] 2025-11-27 13:37:29,670 | INFO     | mean y: 2760224.9453924913
[2025-11-27 08:38:13] 2025-11-27 13:37:29,670 | INFO     | intersect: -12604398623.169176
[2025-11-27 08:38:13] 2025-11-27 13:37:29,670 | INFO     | chi2: 28.153731688622
[2025-11-27 08:38:13] 2025-11-27 13:37:29,670 | INFO     | current chi2=28.153731688622 (change=10.81556511978678 %)
[2025-11-27 08:38:13] 2025-11-27 13:37:29,671 | INFO     | right removable region: 585
[2025-11-27 08:38:13] 2025-11-27 13:37:29,671 | INFO     | sum of square deviations: 62397166163.76093
[2025-11-27 08:38:13] 2025-11-27 13:37:29,675 | INFO     | sum of deviations: 28023048847.75421
[2025-11-27 08:38:13] 2025-11-27 13:37:29,675 | INFO     | mean x: 1764232706.788396
[2025-11-27 08:38:13] 2025-11-27 13:37:29,675 | INFO     | mean y: 2764858.6109215016
[2025-11-27 08:38:13] 2025-11-27 13:37:29,675 | INFO     | intersect: -789565664.7238092
[2025-11-27 08:38:13] 2025-11-27 13:37:29,676 | INFO     | chi2: 26.939921720083518
[2025-11-27 08:38:13] 2025-11-27 13:37:29,676 | INFO     | current chi2=26.939921720083518 (change=14.6606311058288 %)
[2025-11-27 08:38:13] 2025-11-27 13:37:29,676 | INFO     | left removable region: 10
[2025-11-27 08:38:13] 2025-11-27 13:37:29,676 | INFO     | sum of square deviations: 58948877777.652145
[2025-11-27 08:38:13] 2025-11-27 13:37:29,681 | INFO     | sum of deviations: 59484479832.173546
[2025-11-27 08:38:13] 2025-11-27 13:37:29,681 | INFO     | mean x: 1764232676.3130436
[2025-11-27 08:38:13] 2025-11-27 13:37:29,681 | INFO     | mean y: 2805469.0434782607
[2025-11-27 08:38:13] 2025-11-27 13:37:29,681 | INFO     | intersect: -1777456802.4325335
[2025-11-27 08:38:13] 2025-11-27 13:37:29,681 | INFO     | chi2: 19.62999964439222
[2025-11-27 08:38:13] 2025-11-27 13:37:29,681 | INFO     | current memory leak: 1.01 B/s (using 575 data points, chi2=19.63)
[2025-11-27 08:38:13] 2025-11-27 13:37:29,682 | INFO     | could have reported an average CPU frequency of 3800 MHz (23 samples)
[2025-11-27 08:38:13] 2025-11-27 13:37:29,682 | INFO     | ..............................
[2025-11-27 08:38:13] 2025-11-27 13:37:29,682 | INFO     | . Timing measurements:
[2025-11-27 08:38:13] 2025-11-27 13:37:29,682 | INFO     | . get job = 0 s
[2025-11-27 08:38:13] 2025-11-27 13:37:29,682 | INFO     | . initial setup = 7 s
[2025-11-27 08:38:13] 2025-11-27 13:37:29,682 | INFO     | . payload setup = 54 s
[2025-11-27 08:38:13] 2025-11-27 13:37:29,682 | INFO     | . stage-in = 0 s
[2025-11-27 08:38:13] 2025-11-27 13:37:29,682 | INFO     | . payload execution = 36072 s
[2025-11-27 08:38:13] 2025-11-27 13:37:29,682 | INFO     | . stage-out = 8 s
[2025-11-27 08:38:13] 2025-11-27 13:37:29,682 | INFO     | . log creation = 2 s
[2025-11-27 08:38:13] 2025-11-27 13:37:29,682 | INFO     | ..............................
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | 
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | job summary report
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | --------------------------------------------------
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | PanDA job id: 6898039649
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | task id: 47556161
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | errors: (none)
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | pilot state: finished 
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | transexitcode: 0
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | exeerrorcode: 0
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | exeerrordiag: 
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | exitcode: 0
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | exitmsg: OK
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | cpuconsumptiontime: 132557 s
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | nevents: 1000
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | neventsw: 0
[2025-11-27 08:38:13] 2025-11-27 13:37:29,740 | INFO     | pid: 482882
[2025-11-27 08:38:13] 2025-11-27 13:37:29,741 | INFO     | pgrp: 482882
[2025-11-27 08:38:13] 2025-11-27 13:37:29,741 | INFO     | corecount: 8
[2025-11-27 08:38:13] 2025-11-27 13:37:29,741 | INFO     | event service: False
[2025-11-27 08:38:13] 2025-11-27 13:37:29,741 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 23: 2284321, 33: 2284349, 39: 2284667, 44: 2284823, 36131: 2325728, 36140: 2334780, 36188: 2334970}
[2025-11-27 08:38:13] 2025-11-27 13:37:29,741 | INFO     | --------------------------------------------------
[2025-11-27 08:38:13] 2025-11-27 13:37:29,741 | INFO     | 
[2025-11-27 08:38:13] 2025-11-27 13:37:29,741 | INFO     | executing command: ls -lF /tmp/boinchome/slots/13
[2025-11-27 08:38:13] 2025-11-27 13:37:29,974 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,974 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,974 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,974 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,974 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,974 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,974 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,974 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,974 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,974 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,975 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,975 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,975 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,975 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,975 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,975 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,975 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,975 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 08:38:13] 2025-11-27 13:37:29,975 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,975 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 08:38:13] 2025-11-27 13:37:29,975 | INFO     | job 6898039649 has completed (purged errors)
[2025-11-27 08:38:13] 2025-11-27 13:37:29,975 | INFO     | overall cleanup function is called
[2025-11-27 08:38:13] 2025-11-27 13:37:30,995 | INFO     | --- collectZombieJob: --- 10, [482882]
[2025-11-27 08:38:13] 2025-11-27 13:37:30,995 | INFO     | zombie collector waiting for pid 482882
[2025-11-27 08:38:13] 2025-11-27 13:37:30,995 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 08:38:13] 2025-11-27 13:37:30,995 | INFO     | collected zombie processes
[2025-11-27 08:38:13] 2025-11-27 13:37:30,995 | INFO     | will attempt to kill all subprocesses of pid=482882
[2025-11-27 08:38:13] 2025-11-27 13:37:33,265 | INFO     | process IDs to be killed: [482882] (in reverse order)
[2025-11-27 08:38:13] 2025-11-27 13:37:33,720 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 08:38:13] 2025-11-27 13:37:33,721 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 08:38:13] 2025-11-27 13:37:33,838 | INFO     | did not find any defunct processes belonging to 482882
[2025-11-27 08:38:13] 2025-11-27 13:37:34,018 | INFO     | did not find any defunct processes belonging to 482882
[2025-11-27 08:38:13] 2025-11-27 13:37:34,027 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 08:38:13] 2025-11-27 13:37:34,027 | INFO     | ready for new job
[2025-11-27 08:38:13] 2025-11-27 13:37:34,027 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 08:38:13] 2025-11-27 13:37:34,037 | INFO     | ***************************************
[2025-11-27 08:38:13] 2025-11-27 13:37:34,047 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 08:38:13] 2025-11-27 13:37:34,047 | INFO     | ***************************************
[2025-11-27 08:38:13] 2025-11-27 13:37:34,047 | INFO     | 
[2025-11-27 08:38:13] 2025-11-27 13:37:34,054 | INFO     | architecture information:
[2025-11-27 08:38:13] 2025-11-27 13:37:34,066 | INFO     | executing command: cat /etc/os-release
[2025-11-27 08:38:13] 2025-11-27 13:37:34,339 | INFO     | cat /etc/os-release:
[2025-11-27 08:38:13] NAME="CentOS Linux"
[2025-11-27 08:38:13] VERSION="7 (Core)"
[2025-11-27 08:38:13] ID="centos"
[2025-11-27 08:38:13] ID_LIKE="rhel fedora"
[2025-11-27 08:38:13] VERSION_ID="7"
[2025-11-27 08:38:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 08:38:13] ANSI_COLOR="0;31"
[2025-11-27 08:38:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 08:38:13] HOME_URL="https://www.centos.org/"
[2025-11-27 08:38:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 08:38:13] 
[2025-11-27 08:38:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 08:38:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 08:38:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 08:38:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 08:38:13] 
[2025-11-27 08:38:13] 2025-11-27 13:37:34,339 | INFO     | ***************************************
[2025-11-27 08:38:13] 2025-11-27 13:37:34,843 | INFO     | executing command: df -mP /tmp/boinchome/slots/13
[2025-11-27 08:38:13] 2025-11-27 13:37:34,901 | INFO     | sufficient remaining disk space (156046983168 B)
[2025-11-27 08:38:13] 2025-11-27 13:37:34,902 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 08:38:13] 2025-11-27 13:37:34,902 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 08:38:13] 2025-11-27 13:37:34,902 | INFO     | update_server=False
[2025-11-27 08:38:13] 2025-11-27 13:37:34,902 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 08:38:13] 2025-11-27 13:37:34,904 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:38:13] 2025-11-27 13:37:34,904 | INFO     | aborting loop
[2025-11-27 08:38:13] 2025-11-27 13:37:34,904 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:38:13] 2025-11-27 13:37:35,185 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 08:38:13] 2025-11-27 13:37:35,350 | INFO     | all data control threads have been joined
[2025-11-27 08:38:13] 2025-11-27 13:37:35,551 | INFO     | all job control threads have been joined
[2025-11-27 08:38:13] 2025-11-27 13:37:35,908 | INFO     | [job] retrieve thread has finished
[2025-11-27 08:38:13] 2025-11-27 13:37:35,916 | INFO     | [job] job monitor thread has finished
[2025-11-27 08:38:13] 2025-11-27 13:37:35,916 | INFO     | [job] queue monitor thread has finished
[2025-11-27 08:38:13] 2025-11-27 13:37:36,241 | INFO     | [payload] failed_post thread has finished
[2025-11-27 08:38:13] 2025-11-27 13:37:36,345 | INFO     | all payload control threads have been joined
[2025-11-27 08:38:13] 2025-11-27 13:37:36,356 | INFO     | [data] control thread has finished
[2025-11-27 08:38:13] 2025-11-27 13:37:36,485 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 08:38:13] 2025-11-27 13:37:36,485 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 08:38:13] 2025-11-27 13:37:36,558 | INFO     | [job] control thread has finished
[2025-11-27 08:38:13] 2025-11-27 13:37:36,911 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 08:38:13] 2025-11-27 13:37:37,000 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 08:38:13] 2025-11-27 13:37:37,159 | INFO     | [data] copytool_in thread has finished
[2025-11-27 08:38:13] 2025-11-27 13:37:37,192 | INFO     | [data] copytool_out thread has finished
[2025-11-27 08:38:13] 2025-11-27 13:37:37,238 | INFO     | [job] validate thread has finished
[2025-11-27 08:38:13] 2025-11-27 13:37:37,351 | INFO     | [payload] control thread has finished
[2025-11-27 08:38:13] 2025-11-27 13:37:37,366 | INFO     | [payload] validate_post thread has finished
[2025-11-27 08:38:13] 2025-11-27 13:37:38,208 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 08:38:13] 2025-11-27 13:37:42,219 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 08:38:13] 2025-11-27 13:38:02,452 | INFO     | [monitor] cgroup control has ended
[2025-11-27 08:38:13] 2025-11-27 13:38:03,250 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140080871434048)>', '<ExcThread(monitor, started 140080517719808)>']
[2025-11-27 08:38:13] 2025-11-27 13:38:07,808 | INFO     | PID=462146 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 08:38:13] 2025-11-27 13:38:07,809 | INFO     | .. there are 127 such processes running
[2025-11-27 08:38:13] 2025-11-27 13:38:07,809 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 08:38:13] 2025-11-27 13:38:07,809 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 08:38:13] 2025-11-27 13:38:07,809 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 08:38:13] 2025-11-27 13:38:07,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 08:38:13] 2025-11-27 13:38:07,809 | INFO     | [monitor] control thread has ended
[2025-11-27 08:38:13] 2025-11-27 13:38:08,285 | INFO     | all workflow threads have been joined
[2025-11-27 08:38:13] 2025-11-27 13:38:08,288 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 08:38:13] 2025-11-27 13:38:08,289 | INFO     | traces error code: 0
[2025-11-27 08:38:13] 2025-11-27 13:38:08,289 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 08:38:13] 2025-11-27 13:38:09,655 [wrapper] ==== pilot stdout END ====
[2025-11-27 08:38:13] 2025-11-27 13:38:09,690 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 08:38:13] 2025-11-27 13:38:09,731 [wrapper] pilotpid: 462146
[2025-11-27 08:38:13] 2025-11-27 13:38:09,753 [wrapper] Pilot exit status: 0
[2025-11-27 08:38:13] 2025-11-27 13:38:10,026 [wrapper] pandaids: 6898039649
[2025-11-27 08:38:13] 2025-11-27 13:38:10,955 [wrapper] cleanup supervisor_pilot 4008264 462147
[2025-11-27 08:38:13] 2025-11-27 13:38:10,959 [wrapper] Test setup, not cleaning
[2025-11-27 08:38:13] 2025-11-27 13:38:10,962 [wrapper] apfmon messages muted
[2025-11-27 08:38:13] 2025-11-27 13:38:10,982 [wrapper] ==== wrapper stdout END ====
[2025-11-27 08:38:13] 2025-11-27 13:38:10,990 [wrapper] ==== wrapper stderr END ====
[2025-11-27 08:38:13]  *** Error codes and diagnostics ***
[2025-11-27 08:38:13]     "exeErrorCode": 0,
[2025-11-27 08:38:13]     "exeErrorDiag": "",
[2025-11-27 08:38:13]     "pilotErrorCode": 0,
[2025-11-27 08:38:13]     "pilotErrorDiag": "",
[2025-11-27 08:38:13]  *** Listing of results directory ***
[2025-11-27 08:38:13] total 1312304
[2025-11-27 08:38:13] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 21:38 pilot3.tar.gz
[2025-11-27 08:38:13] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:56 queuedata.json
[2025-11-27 08:38:13] -rwx------. 1 boincer umatlas     36292 Nov 25 21:56 runpilot2-wrapper.sh
[2025-11-27 08:38:13] -rw-r--r--. 1 boincer umatlas       100 Nov 26 22:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 08:38:13] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 22:31 run_atlas
[2025-11-27 08:38:13] -rw-r--r--. 1 boincer umatlas       105 Nov 26 22:31 job.xml
[2025-11-27 08:38:13] -rw-r--r--. 2 boincer umatlas 408955245 Nov 26 22:31 EVNT.47483658._002400.pool.root.1
[2025-11-27 08:38:13] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 22:31 start_atlas.sh
[2025-11-27 08:38:13] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 22:31 shared
[2025-11-27 08:38:13] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 22:31 input.tar.gz
[2025-11-27 08:38:13] -rw-r--r--. 1 boincer umatlas         0 Nov 26 22:31 boinc_lockfile
[2025-11-27 08:38:13] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 22:31 pandaJob.out
[2025-11-27 08:38:13] -rw-------. 1 boincer umatlas        57 Nov 26 22:31 setup.sh.local
[2025-11-27 08:38:13] -rw-------. 1 boincer umatlas    991546 Nov 26 22:32 agis_schedconf.cvmfs.json
[2025-11-27 08:38:13] drwx------. 5 boincer umatlas      4096 Nov 26 22:32 pilot3
[2025-11-27 08:38:13] -rw-r--r--. 1 boincer umatlas       533 Nov 27 08:03 boinc_task_state.xml
[2025-11-27 08:38:13] -rw-r--r--. 1 boincer umatlas      7174 Nov 27 08:30 init_data.xml
[2025-11-27 08:38:13] -rw-------. 1 boincer umatlas 919004668 Nov 27 08:34 HITS.47556161._003829.pool.root.1
[2025-11-27 08:38:13] -rw-------. 1 boincer umatlas      1054 Nov 27 08:36 memory_monitor_summary.json
[2025-11-27 08:38:13] -rw-------. 1 boincer umatlas   1516240 Nov 27 08:36 agis_ddmendpoints.agis.ALL.json
[2025-11-27 08:38:13] -rw-------. 1 boincer umatlas   1784276 Nov 27 08:36 log.47556161._003829.job.log.tgz.1
[2025-11-27 08:38:13] -rw-------. 1 boincer umatlas      8579 Nov 27 08:37 heartbeat.json
[2025-11-27 08:38:13] -rw-------. 1 boincer umatlas        95 Nov 27 08:38 pilot_heartbeat.json
[2025-11-27 08:38:13] -rw-------. 1 boincer umatlas      4826 Nov 27 08:38 pilotlog.txt
[2025-11-27 08:38:13] -rw-------. 1 boincer umatlas   4172328 Nov 27 08:38 log.47556161._003829.job.log.1
[2025-11-27 08:38:13] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 08:38 boinc_mmap_file
[2025-11-27 08:38:13] -rw-r--r--. 1 boincer umatlas        29 Nov 27 08:38 wrapper_checkpoint.txt
[2025-11-27 08:38:13] -rw-------. 1 boincer umatlas       353 Nov 27 08:38 output.list
[2025-11-27 08:38:13] -rw-r--r--. 1 boincer umatlas       620 Nov 27 08:38 runtime_log
[2025-11-27 08:38:13] -rw-------. 1 boincer umatlas   5980160 Nov 27 08:38 result.tar.gz
[2025-11-27 08:38:13] -rw-------. 1 boincer umatlas       658 Nov 27 08:38 Tm4KDmhsKi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4oJKDm1Z4O2m.diag
[2025-11-27 08:38:13] -rw-r--r--. 1 boincer umatlas      9351 Nov 27 08:38 runtime_log.err
[2025-11-27 08:38:13] -rw-r--r--. 1 boincer umatlas     21859 Nov 27 08:38 stderr.txt
[2025-11-27 08:38:13] HITS file was successfully produced:
[2025-11-27 08:38:13] -rw-------. 1 boincer umatlas 919004668 Nov 27 08:34 shared/HITS.pool.root.1
[2025-11-27 08:38:13]  *** Contents of shared directory: ***
[2025-11-27 08:38:13] total 1303284
[2025-11-27 08:38:13] -rw-r--r--. 2 boincer umatlas 408955245 Nov 26 22:31 ATLAS.root_0
[2025-11-27 08:38:13] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 22:31 start_atlas.sh
[2025-11-27 08:38:13] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 22:31 input.tar.gz
[2025-11-27 08:38:13] -rw-------. 1 boincer umatlas 919004668 Nov 27 08:34 HITS.pool.root.1
[2025-11-27 08:38:13] -rw-------. 1 boincer umatlas   5980160 Nov 27 08:38 result.tar.gz
08:38:15 (434618): run_atlas exited; CPU time 133682.384675
08:38:15 (434618): called boinc_finish(0)

</stderr_txt>
]]>

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