Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:03:00 (3173962): wrapper (7.7.26015): starting
23:03:00 (3173962): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 23:03:00] Arguments: --nthreads 8
[2025-11-26 23:03:00] Threads: 8
[2025-11-26 23:03:00] Checking for CVMFS
[2025-11-26 23:03:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:03:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:03:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:03:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:03:01] 2.13.3.0 11460 30985 257076 153345 2 659 32699438 32935936 63350 16776704 0 402108100 99.728 270504566 35422 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 23:03:01] CVMFS is ok
[2025-11-26 23:03:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:03:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:03:01] Further information can be found at the LHC@home message board.
[2025-11-26 23:03:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:03:01] Checking for apptainer binary...
[2025-11-26 23:03:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:03:01] Running /usr/bin/apptainer --version
[2025-11-26 23:03:01] apptainer version 1.4.4-1.el9
[2025-11-26 23:03:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:03:01] c7-3-34.aglt2.org
[2025-11-26 23:03:01] apptainer works
[2025-11-26 23:03:01] Set ATHENA_PROC_NUMBER=8
[2025-11-26 23:03:01] Set ATHENA_CORE_NUMBER=8
[2025-11-26 23:03:01] Starting ATLAS job with PandaID=6898039405
[2025-11-26 23:03:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:06:39]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:06:39] 2025-11-27 15:05:47,190 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:06:39] 2025-11-27 15:05:48,760 | INFO     | time since job start (39744s) is within the limit (172800.0s)
[2025-11-27 10:06:39] 2025-11-27 15:05:49,715 | INFO     | monitor loop #2534: job 0:6898039405 is in state 'finished'
[2025-11-27 10:06:39] 2025-11-27 15:05:49,716 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:06:39] 2025-11-27 15:05:50,767 | INFO     | time since job start (39746s) is within the limit (172800.0s)
[2025-11-27 10:06:39] 2025-11-27 15:05:52,223 | INFO     | monitor loop #2535: job 0:6898039405 is in state 'finished'
[2025-11-27 10:06:39] 2025-11-27 15:05:52,223 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:06:39] 2025-11-27 15:05:52,774 | INFO     | time since job start (39748s) is within the limit (172800.0s)
[2025-11-27 10:06:39] 2025-11-27 15:05:54,730 | INFO     | monitor loop #2536: job 0:6898039405 is in state 'finished'
[2025-11-27 10:06:39] 2025-11-27 15:05:54,730 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:06:39] 2025-11-27 15:05:54,781 | INFO     | time since job start (39750s) is within the limit (172800.0s)
[2025-11-27 10:06:39] 2025-11-27 15:05:56,787 | INFO     | time since job start (39752s) is within the limit (172800.0s)
[2025-11-27 10:06:39] 2025-11-27 15:05:57,250 | INFO     | monitor loop #2537: job 0:6898039405 is in state 'finished'
[2025-11-27 10:06:39] 2025-11-27 15:05:57,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:06:39] 2025-11-27 15:05:58,794 | INFO     | time since job start (39754s) is within the limit (172800.0s)
[2025-11-27 10:06:39] 2025-11-27 15:05:59,755 | INFO     | monitor loop #2538: job 0:6898039405 is in state 'finished'
[2025-11-27 10:06:39] 2025-11-27 15:05:59,758 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:06:39] 2025-11-27 15:05:59,786 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 10:06:39] 2025-11-27 15:05:59,814 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3180.2028749999995
[2025-11-27 10:06:39] 2025-11-27 15:05:59,830 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6898039405/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:06:39] 2025-11-27 15:05:59,831 | INFO     | extracted standard info from prmon json
[2025-11-27 10:06:39] 2025-11-27 15:05:59,831 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:06:39] 2025-11-27 15:05:59,831 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:06:39] 2025-11-27 15:05:59,852 | INFO     | fitting pss+swap vs Time
[2025-11-27 10:06:39] 2025-11-27 15:05:59,853 | INFO     | sum of square deviations: 85549181013.97543
[2025-11-27 10:06:39] 2025-11-27 15:05:59,861 | INFO     | sum of deviations: 2062956662034.5454
[2025-11-27 10:06:39] 2025-11-27 15:05:59,861 | INFO     | mean x: 1764236089.3394778
[2025-11-27 10:06:39] 2025-11-27 15:05:59,862 | INFO     | mean y: 3785173.9477726575
[2025-11-27 10:06:39] 2025-11-27 15:05:59,862 | INFO     | intersect: -42539492865.266754
[2025-11-27 10:06:39] 2025-11-27 15:05:59,862 | INFO     | chi2: 24.885490620406333
[2025-11-27 10:06:39] 2025-11-27 15:05:59,863 | INFO     | sum of square deviations: 83593146625.89464
[2025-11-27 10:06:39] 2025-11-27 15:05:59,871 | INFO     | sum of deviations: 2363678833924.9004
[2025-11-27 10:06:39] 2025-11-27 15:05:59,871 | INFO     | mean x: 1764235936.8421052
[2025-11-27 10:06:39] 2025-11-27 15:05:59,871 | INFO     | mean y: 3808613.3126934986
[2025-11-27 10:06:39] 2025-11-27 15:05:59,871 | INFO     | intersect: -49881706052.4504
[2025-11-27 10:06:39] 2025-11-27 15:05:59,872 | INFO     | chi2: 20.88814210364139
[2025-11-27 10:06:39] 2025-11-27 15:05:59,872 | INFO     | current chi2=20.88814210364139 (change=16.062968489305497 %)
[2025-11-27 10:06:39] 2025-11-27 15:05:59,872 | INFO     | right removable region: 645
[2025-11-27 10:06:39] 2025-11-27 15:05:59,873 | INFO     | sum of square deviations: 83593011815.89467
[2025-11-27 10:06:39] 2025-11-27 15:05:59,880 | INFO     | sum of deviations: 1743344797870.738
[2025-11-27 10:06:39] 2025-11-27 15:05:59,881 | INFO     | mean x: 1764236241.8421052
[2025-11-27 10:06:39] 2025-11-27 15:05:59,881 | INFO     | mean y: 3810080.1052631577
[2025-11-27 10:06:39] 2025-11-27 15:05:59,881 | INFO     | intersect: -36789601326.15342
[2025-11-27 10:06:39] 2025-11-27 15:05:59,881 | INFO     | chi2: 21.411616772956837
[2025-11-27 10:06:39] 2025-11-27 15:05:59,882 | INFO     | current chi2=21.411616772956837 (change=13.959434838712353 %)
[2025-11-27 10:06:39] 2025-11-27 15:05:59,882 | INFO     | left removable region: 10
[2025-11-27 10:06:39] 2025-11-27 15:05:59,882 | INFO     | sum of square deviations: 79395039608.08488
[2025-11-27 10:06:39] 2025-11-27 15:05:59,890 | INFO     | sum of deviations: 1934765209997.4436
[2025-11-27 10:06:39] 2025-11-27 15:05:59,890 | INFO     | mean x: 1764236211.3480315
[2025-11-27 10:06:39] 2025-11-27 15:05:59,890 | INFO     | mean y: 3853088.9527559057
[2025-11-27 10:06:39] 2025-11-27 15:05:59,890 | INFO     | intersect: -42988541156.11895
[2025-11-27 10:06:39] 2025-11-27 15:05:59,891 | INFO     | chi2: 15.68473500221658
[2025-11-27 10:06:39] 2025-11-27 15:05:59,891 | INFO     | current memory leak: 24.37 B/s (using 635 data points, chi2=15.68)
[2025-11-27 10:06:39] 2025-11-27 15:05:59,892 | INFO     | could have reported an average CPU frequency of 3192 MHz (25 samples)
[2025-11-27 10:06:39] 2025-11-27 15:05:59,892 | INFO     | ..............................
[2025-11-27 10:06:39] 2025-11-27 15:05:59,892 | INFO     | . Timing measurements:
[2025-11-27 10:06:39] 2025-11-27 15:05:59,892 | INFO     | . get job = 0 s
[2025-11-27 10:06:39] 2025-11-27 15:05:59,892 | INFO     | . initial setup = 3 s
[2025-11-27 10:06:39] 2025-11-27 15:05:59,892 | INFO     | . payload setup = 13 s
[2025-11-27 10:06:39] 2025-11-27 15:05:59,892 | INFO     | . stage-in = 0 s
[2025-11-27 10:06:39] 2025-11-27 15:05:59,892 | INFO     | . payload execution = 39673 s
[2025-11-27 10:06:39] 2025-11-27 15:05:59,892 | INFO     | . stage-out = 7 s
[2025-11-27 10:06:39] 2025-11-27 15:05:59,892 | INFO     | . log creation = 1 s
[2025-11-27 10:06:39] 2025-11-27 15:05:59,892 | INFO     | ..............................
[2025-11-27 10:06:39] 2025-11-27 15:06:00,231 | INFO     | 
[2025-11-27 10:06:39] 2025-11-27 15:06:00,231 | INFO     | job summary report
[2025-11-27 10:06:39] 2025-11-27 15:06:00,232 | INFO     | --------------------------------------------------
[2025-11-27 10:06:39] 2025-11-27 15:06:00,232 | INFO     | PanDA job id: 6898039405
[2025-11-27 10:06:39] 2025-11-27 15:06:00,232 | INFO     | task id: 47556161
[2025-11-27 10:06:39] 2025-11-27 15:06:00,233 | INFO     | errors: (none)
[2025-11-27 10:06:39] 2025-11-27 15:06:00,233 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:06:39] 2025-11-27 15:06:00,233 | INFO     | pilot state: finished 
[2025-11-27 10:06:39] 2025-11-27 15:06:00,233 | INFO     | transexitcode: 0
[2025-11-27 10:06:39] 2025-11-27 15:06:00,233 | INFO     | exeerrorcode: 0
[2025-11-27 10:06:39] 2025-11-27 15:06:00,233 | INFO     | exeerrordiag: 
[2025-11-27 10:06:39] 2025-11-27 15:06:00,233 | INFO     | exitcode: 0
[2025-11-27 10:06:39] 2025-11-27 15:06:00,233 | INFO     | exitmsg: OK
[2025-11-27 10:06:39] 2025-11-27 15:06:00,233 | INFO     | cpuconsumptiontime: 192603 s
[2025-11-27 10:06:39] 2025-11-27 15:06:00,233 | INFO     | nevents: 1000
[2025-11-27 10:06:39] 2025-11-27 15:06:00,233 | INFO     | neventsw: 0
[2025-11-27 10:06:39] 2025-11-27 15:06:00,233 | INFO     | pid: 3193103
[2025-11-27 10:06:39] 2025-11-27 15:06:00,233 | INFO     | pgrp: 3193103
[2025-11-27 10:06:39] 2025-11-27 15:06:00,234 | INFO     | corecount: 8
[2025-11-27 10:06:39] 2025-11-27 15:06:00,234 | INFO     | event service: False
[2025-11-27 10:06:39] 2025-11-27 15:06:00,234 | INFO     | sizes: {0: 2284093, 1: 2284292, 11: 2284292, 14: 2284582, 22: 2284610, 39692: 2328729, 39700: 2337723, 39703: 2337779, 39724: 2338089}
[2025-11-27 10:06:39] 2025-11-27 15:06:00,234 | INFO     | --------------------------------------------------
[2025-11-27 10:06:39] 2025-11-27 15:06:00,234 | INFO     | 
[2025-11-27 10:06:39] 2025-11-27 15:06:00,234 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 10:06:39] 2025-11-27 15:06:00,306 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,306 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,306 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,306 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,306 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,307 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,307 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,307 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,307 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,307 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,307 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,307 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,307 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,307 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,307 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,307 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,308 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,308 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:06:39] 2025-11-27 15:06:00,308 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,308 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:06:39] 2025-11-27 15:06:00,308 | INFO     | job 6898039405 has completed (purged errors)
[2025-11-27 10:06:39] 2025-11-27 15:06:00,308 | INFO     | overall cleanup function is called
[2025-11-27 10:06:39] 2025-11-27 15:06:01,333 | INFO     | --- collectZombieJob: --- 10, [3193103]
[2025-11-27 10:06:39] 2025-11-27 15:06:01,334 | INFO     | zombie collector waiting for pid 3193103
[2025-11-27 10:06:39] 2025-11-27 15:06:01,334 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:06:39] 2025-11-27 15:06:01,334 | INFO     | collected zombie processes
[2025-11-27 10:06:39] 2025-11-27 15:06:01,334 | INFO     | will attempt to kill all subprocesses of pid=3193103
[2025-11-27 10:06:39] 2025-11-27 15:06:02,262 | INFO     | process IDs to be killed: [3193103] (in reverse order)
[2025-11-27 10:06:39] 2025-11-27 15:06:02,594 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:06:39] 2025-11-27 15:06:02,594 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:06:39] 2025-11-27 15:06:02,626 | INFO     | did not find any defunct processes belonging to 3193103
[2025-11-27 10:06:39] 2025-11-27 15:06:02,657 | INFO     | did not find any defunct processes belonging to 3193103
[2025-11-27 10:06:39] 2025-11-27 15:06:02,693 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:06:39] 2025-11-27 15:06:02,694 | INFO     | ready for new job
[2025-11-27 10:06:39] 2025-11-27 15:06:02,694 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:06:39] 2025-11-27 15:06:02,748 | INFO     | ***************************************
[2025-11-27 10:06:39] 2025-11-27 15:06:02,749 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:06:39] 2025-11-27 15:06:02,749 | INFO     | ***************************************
[2025-11-27 10:06:39] 2025-11-27 15:06:02,749 | INFO     | 
[2025-11-27 10:06:39] 2025-11-27 15:06:02,777 | INFO     | architecture information:
[2025-11-27 10:06:39] 2025-11-27 15:06:02,791 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:06:39] 2025-11-27 15:06:02,877 | INFO     | cat /etc/os-release:
[2025-11-27 10:06:39] NAME="CentOS Linux"
[2025-11-27 10:06:39] VERSION="7 (Core)"
[2025-11-27 10:06:39] ID="centos"
[2025-11-27 10:06:39] ID_LIKE="rhel fedora"
[2025-11-27 10:06:39] VERSION_ID="7"
[2025-11-27 10:06:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:06:39] ANSI_COLOR="0;31"
[2025-11-27 10:06:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:06:39] HOME_URL="https://www.centos.org/"
[2025-11-27 10:06:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:06:39] 
[2025-11-27 10:06:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:06:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:06:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:06:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:06:39] 
[2025-11-27 10:06:39] 2025-11-27 15:06:02,877 | INFO     | ***************************************
[2025-11-27 10:06:39] 2025-11-27 15:06:03,388 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 10:06:39] 2025-11-27 15:06:03,451 | INFO     | sufficient remaining disk space (65097695232 B)
[2025-11-27 10:06:39] 2025-11-27 15:06:03,451 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:06:39] 2025-11-27 15:06:03,451 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:06:39] 2025-11-27 15:06:03,451 | INFO     | update_server=False
[2025-11-27 10:06:39] 2025-11-27 15:06:03,452 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:06:39] 2025-11-27 15:06:03,452 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:06:39] 2025-11-27 15:06:03,452 | INFO     | aborting loop
[2025-11-27 10:06:39] 2025-11-27 15:06:03,457 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:06:39] 2025-11-27 15:06:03,554 | INFO     | all job control threads have been joined
[2025-11-27 10:06:39] 2025-11-27 15:06:03,659 | INFO     | all data control threads have been joined
[2025-11-27 10:06:39] 2025-11-27 15:06:03,982 | INFO     | all payload control threads have been joined
[2025-11-27 10:06:39] 2025-11-27 15:06:04,190 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:06:39] 2025-11-27 15:06:04,457 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:06:39] 2025-11-27 15:06:04,464 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:06:39] 2025-11-27 15:06:04,533 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:06:39] 2025-11-27 15:06:04,559 | INFO     | [job] control thread has finished
[2025-11-27 10:06:39] 2025-11-27 15:06:04,665 | INFO     | [data] control thread has finished
[2025-11-27 10:06:39] 2025-11-27 15:06:04,666 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:06:39] 2025-11-27 15:06:04,759 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:06:39] 2025-11-27 15:06:04,985 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:06:39] 2025-11-27 15:06:04,988 | INFO     | [payload] control thread has finished
[2025-11-27 10:06:39] 2025-11-27 15:06:05,205 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:06:39] 2025-11-27 15:06:05,218 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:06:39] 2025-11-27 15:06:05,248 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:06:39] 2025-11-27 15:06:05,767 | INFO     | [job] validate thread has finished
[2025-11-27 10:06:39] 2025-11-27 15:06:05,846 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:06:39] 2025-11-27 15:06:06,198 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:06:39] 2025-11-27 15:06:06,254 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:06:39] 2025-11-27 15:06:07,479 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:06:39] 2025-11-27 15:06:32,262 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:06:39] 2025-11-27 15:06:32,443 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140285145462592)>', '<ExcThread(monitor, started 140284419626752)>']
[2025-11-27 10:06:39] 2025-11-27 15:06:33,084 | INFO     | PID=3180038 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:06:39] 2025-11-27 15:06:33,084 | INFO     | .. there are 87 such processes running
[2025-11-27 10:06:39] 2025-11-27 15:06:33,085 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:06:39] 2025-11-27 15:06:33,086 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:06:39] 2025-11-27 15:06:33,086 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:06:39] 2025-11-27 15:06:33,086 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:06:39] 2025-11-27 15:06:33,086 | INFO     | [monitor] control thread has ended
[2025-11-27 10:06:39] 2025-11-27 15:06:37,468 | INFO     | all workflow threads have been joined
[2025-11-27 10:06:39] 2025-11-27 15:06:37,469 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:06:39] 2025-11-27 15:06:37,469 | INFO     | traces error code: 0
[2025-11-27 10:06:39] 2025-11-27 15:06:37,469 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:06:39] 2025-11-27 15:06:38,197 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:06:39] 2025-11-27 15:06:38,214 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:06:39] 2025-11-27 15:06:38,228 [wrapper] pilotpid: 3180038
[2025-11-27 10:06:39] 2025-11-27 15:06:38,249 [wrapper] Pilot exit status: 0
[2025-11-27 10:06:39] 2025-11-27 15:06:38,303 [wrapper] pandaids: 6898039405
[2025-11-27 10:06:39] 2025-11-27 15:06:38,689 [wrapper] cleanup supervisor_pilot 4031904 3180039
[2025-11-27 10:06:39] 2025-11-27 15:06:38,692 [wrapper] Test setup, not cleaning
[2025-11-27 10:06:39] 2025-11-27 15:06:38,694 [wrapper] apfmon messages muted
[2025-11-27 10:06:39] 2025-11-27 15:06:38,697 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:06:39] 2025-11-27 15:06:38,699 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:06:39]  *** Error codes and diagnostics ***
[2025-11-27 10:06:39]     "exeErrorCode": 0,
[2025-11-27 10:06:39]     "exeErrorDiag": "",
[2025-11-27 10:06:39]     "pilotErrorCode": 0,
[2025-11-27 10:06:39]     "pilotErrorDiag": "",
[2025-11-27 10:06:39]  *** Listing of results directory ***
[2025-11-27 10:06:39] total 1314764
[2025-11-27 10:06:39] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 21:38 pilot3.tar.gz
[2025-11-27 10:06:39] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:56 queuedata.json
[2025-11-27 10:06:39] -rwx------. 1 boincer umatlas     36292 Nov 25 21:56 runpilot2-wrapper.sh
[2025-11-27 10:06:39] -rw-r--r--. 1 boincer umatlas       100 Nov 26 23:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:06:39] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 23:02 run_atlas
[2025-11-27 10:06:39] -rw-r--r--. 1 boincer umatlas       105 Nov 26 23:02 job.xml
[2025-11-27 10:06:39] -rw-r--r--. 2 boincer umatlas 409110107 Nov 26 23:03 EVNT.47483658._002396.pool.root.1
[2025-11-27 10:06:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 23:03 start_atlas.sh
[2025-11-27 10:06:39] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 23:03 shared
[2025-11-27 10:06:39] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 23:03 input.tar.gz
[2025-11-27 10:06:39] -rw-r--r--. 1 boincer umatlas         0 Nov 26 23:03 boinc_lockfile
[2025-11-27 10:06:39] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 23:03 pandaJob.out
[2025-11-27 10:06:39] -rw-------. 1 boincer umatlas        57 Nov 26 23:03 setup.sh.local
[2025-11-27 10:06:39] -rw-------. 1 boincer umatlas    991546 Nov 26 23:03 agis_schedconf.cvmfs.json
[2025-11-27 10:06:39] drwx------. 5 boincer umatlas      4096 Nov 26 23:03 pilot3
[2025-11-27 10:06:39] -rw-r--r--. 1 boincer umatlas       533 Nov 27 09:41 boinc_task_state.xml
[2025-11-27 10:06:39] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 10:00 init_data.xml
[2025-11-27 10:06:39] -rw-------. 1 boincer umatlas 918989971 Nov 27 10:04 HITS.47556161._003789.pool.root.1
[2025-11-27 10:06:39] -rw-------. 1 boincer umatlas      1075 Nov 27 10:05 memory_monitor_summary.json
[2025-11-27 10:06:39] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:05 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:06:39] -rw-------. 1 boincer umatlas   1911065 Nov 27 10:05 log.47556161._003789.job.log.tgz.1
[2025-11-27 10:06:39] -rw-------. 1 boincer umatlas      8637 Nov 27 10:05 heartbeat.json
[2025-11-27 10:06:39] -rw-------. 1 boincer umatlas        95 Nov 27 10:06 pilot_heartbeat.json
[2025-11-27 10:06:39] -rw-------. 1 boincer umatlas      4824 Nov 27 10:06 pilotlog.txt
[2025-11-27 10:06:39] -rw-r--r--. 1 boincer umatlas        29 Nov 27 10:06 wrapper_checkpoint.txt
[2025-11-27 10:06:39] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 10:06 boinc_mmap_file
[2025-11-27 10:06:39] -rw-------. 1 boincer umatlas   5235057 Nov 27 10:06 log.47556161._003789.job.log.1
[2025-11-27 10:06:39] -rw-------. 1 boincer umatlas       353 Nov 27 10:06 output.list
[2025-11-27 10:06:39] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:06 runtime_log
[2025-11-27 10:06:39] -rw-------. 1 boincer umatlas   7168000 Nov 27 10:06 result.tar.gz
[2025-11-27 10:06:39] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 10:06 runtime_log.err
[2025-11-27 10:06:39] -rw-------. 1 boincer umatlas       664 Nov 27 10:06 RMuLDmbsKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmllMKDmcENeUm.diag
[2025-11-27 10:06:39] -rw-r--r--. 1 boincer umatlas     21809 Nov 27 10:06 stderr.txt
[2025-11-27 10:06:39] HITS file was successfully produced:
[2025-11-27 10:06:39] -rw-------. 1 boincer umatlas 918989971 Nov 27 10:04 shared/HITS.pool.root.1
[2025-11-27 10:06:39]  *** Contents of shared directory: ***
[2025-11-27 10:06:39] total 1304580
[2025-11-27 10:06:39] -rw-r--r--. 2 boincer umatlas 409110107 Nov 26 23:03 ATLAS.root_0
[2025-11-27 10:06:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 23:03 start_atlas.sh
[2025-11-27 10:06:39] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 23:03 input.tar.gz
[2025-11-27 10:06:39] -rw-------. 1 boincer umatlas 918989971 Nov 27 10:04 HITS.pool.root.1
[2025-11-27 10:06:39] -rw-------. 1 boincer umatlas   7168000 Nov 27 10:06 result.tar.gz
10:06:40 (3173962): run_atlas exited; CPU time 193969.013938
10:06:40 (3173962): called boinc_finish(0)

</stderr_txt>
]]>

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