Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:24 (1771003): wrapper (7.7.26015): starting
00:00:24 (1771003): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:00:24] Arguments: --nthreads 12
[2025-11-27 00:00:24] Threads: 12
[2025-11-27 00:00:24] Checking for CVMFS
[2025-11-27 00:00:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:00:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:00:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:00:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:00:26] 2.13.2.0 7884 37641 213696 153347 0 600 32653260 40960001 37223 16776704 0 387778486 99.729 276403999 47148 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:00:26] CVMFS is ok
[2025-11-27 00:00:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:00:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:00:26] Further information can be found at the LHC@home message board.
[2025-11-27 00:00:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:00:26] Checking for apptainer binary...
[2025-11-27 00:00:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:00:26] Running /usr/bin/apptainer --version
[2025-11-27 00:00:27] apptainer version 1.4.4-1.el9
[2025-11-27 00:00:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:00:29] c-208-38.aglt2.org
[2025-11-27 00:00:29] apptainer works
[2025-11-27 00:00:29] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:00:29] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:00:29] Starting ATLAS job with PandaID=6897373274
[2025-11-27 00:00:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 08:38:01]  *** The last 200 lines of the pilot log: ***
[2025-11-27 08:38:01] 2025-11-27 13:37:01,849 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:38:01] 2025-11-27 13:37:01,925 | INFO     | PID=1775459 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 08:38:01] 2025-11-27 13:37:01,925 | INFO     | .. there are 29 such processes running
[2025-11-27 08:38:01] 2025-11-27 13:37:02,925 | INFO     | time since job start (30903s) is within the limit (172800.0s)
[2025-11-27 08:38:01] 2025-11-27 13:37:04,368 | INFO     | monitor loop #1872: job 0:6897373274 is in state 'finished'
[2025-11-27 08:38:01] 2025-11-27 13:37:04,368 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:38:01] 2025-11-27 13:37:04,932 | INFO     | time since job start (30905s) is within the limit (172800.0s)
[2025-11-27 08:38:01] 2025-11-27 13:37:06,878 | INFO     | monitor loop #1873: job 0:6897373274 is in state 'finished'
[2025-11-27 08:38:01] 2025-11-27 13:37:06,879 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:38:01] 2025-11-27 13:37:06,939 | INFO     | time since job start (30907s) is within the limit (172800.0s)
[2025-11-27 08:38:01] 2025-11-27 13:37:08,952 | INFO     | time since job start (30909s) is within the limit (172800.0s)
[2025-11-27 08:38:01] 2025-11-27 13:37:09,384 | INFO     | monitor loop #1874: job 0:6897373274 is in state 'finished'
[2025-11-27 08:38:01] 2025-11-27 13:37:09,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:38:01] 2025-11-27 13:37:10,959 | INFO     | time since job start (30911s) is within the limit (172800.0s)
[2025-11-27 08:38:01] 2025-11-27 13:37:11,894 | INFO     | monitor loop #1875: job 0:6897373274 is in state 'finished'
[2025-11-27 08:38:01] 2025-11-27 13:37:11,894 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:38:01] 2025-11-27 13:37:12,968 | INFO     | time since job start (30913s) is within the limit (172800.0s)
[2025-11-27 08:38:01] 2025-11-27 13:37:13,925 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 08:38:01] 2025-11-27 13:37:13,933 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3720.554570312498
[2025-11-27 08:38:01] 2025-11-27 13:37:13,963 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6897373274/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 08:38:01] 2025-11-27 13:37:13,964 | INFO     | extracted standard info from prmon json
[2025-11-27 08:38:01] 2025-11-27 13:37:13,964 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 08:38:01] 2025-11-27 13:37:13,964 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 08:38:01] 2025-11-27 13:37:13,974 | INFO     | fitting pss+swap vs Time
[2025-11-27 08:38:01] 2025-11-27 13:37:13,974 | INFO     | sum of square deviations: 39708881504.53981
[2025-11-27 08:38:01] 2025-11-27 13:37:13,982 | INFO     | sum of deviations: 961681805939.0
[2025-11-27 08:38:01] 2025-11-27 13:37:13,982 | INFO     | mean x: 1764235238.1507936
[2025-11-27 08:38:01] 2025-11-27 13:37:13,982 | INFO     | mean y: 3187273.25
[2025-11-27 08:38:01] 2025-11-27 13:37:13,982 | INFO     | intersect: -42723599925.027176
[2025-11-27 08:38:01] 2025-11-27 13:37:13,982 | INFO     | chi2: 34.28955938840806
[2025-11-27 08:38:01] 2025-11-27 13:37:13,983 | INFO     | sum of square deviations: 38539942003.28242
[2025-11-27 08:38:01] 2025-11-27 13:37:13,990 | INFO     | sum of deviations: 1159942910208.7292
[2025-11-27 08:38:01] 2025-11-27 13:37:13,990 | INFO     | mean x: 1764235085.7074149
[2025-11-27 08:38:01] 2025-11-27 13:37:13,990 | INFO     | mean y: 3213124.5871743485
[2025-11-27 08:38:01] 2025-11-27 13:37:13,990 | INFO     | intersect: -53095257533.0364
[2025-11-27 08:38:01] 2025-11-27 13:37:13,990 | INFO     | chi2: 30.534607150643033
[2025-11-27 08:38:01] 2025-11-27 13:37:13,991 | INFO     | current chi2=30.534607150643033 (change=10.950715916852596 %)
[2025-11-27 08:38:01] 2025-11-27 13:37:13,991 | INFO     | right removable region: 498
[2025-11-27 08:38:01] 2025-11-27 13:37:13,991 | INFO     | sum of square deviations: 38538204723.28248
[2025-11-27 08:38:01] 2025-11-27 13:37:13,998 | INFO     | sum of deviations: 718782794843.8644
[2025-11-27 08:38:01] 2025-11-27 13:37:13,998 | INFO     | mean x: 1764235390.7074149
[2025-11-27 08:38:01] 2025-11-27 13:37:13,998 | INFO     | mean y: 3218925.7935871743
[2025-11-27 08:38:01] 2025-11-27 13:37:13,998 | INFO     | intersect: -32901843829.47849
[2025-11-27 08:38:01] 2025-11-27 13:37:13,999 | INFO     | chi2: 28.70393162461103
[2025-11-27 08:38:01] 2025-11-27 13:37:13,999 | INFO     | current chi2=28.70393162461103 (change=16.289587452923957 %)
[2025-11-27 08:38:01] 2025-11-27 13:37:13,999 | INFO     | left removable region: 10
[2025-11-27 08:38:01] 2025-11-27 13:37:13,999 | INFO     | sum of square deviations: 36046201318.55533
[2025-11-27 08:38:01] 2025-11-27 13:37:14,003 | INFO     | sum of deviations: 733791273137.6615
[2025-11-27 08:38:01] 2025-11-27 13:37:14,003 | INFO     | mean x: 1764235360.3340163
[2025-11-27 08:38:01] 2025-11-27 13:37:14,003 | INFO     | mean y: 3282242.0143442624
[2025-11-27 08:38:01] 2025-11-27 13:37:14,003 | INFO     | intersect: -35911195950.38187
[2025-11-27 08:38:01] 2025-11-27 13:37:14,004 | INFO     | chi2: 19.238930889256626
[2025-11-27 08:38:01] 2025-11-27 13:37:14,004 | INFO     | current memory leak: 20.36 B/s (using 488 data points, chi2=19.24)
[2025-11-27 08:38:01] 2025-11-27 13:37:14,004 | INFO     | could have reported an average CPU frequency of 3728 MHz (20 samples)
[2025-11-27 08:38:01] 2025-11-27 13:37:14,005 | INFO     | ..............................
[2025-11-27 08:38:01] 2025-11-27 13:37:14,005 | INFO     | . Timing measurements:
[2025-11-27 08:38:01] 2025-11-27 13:37:14,005 | INFO     | . get job = 0 s
[2025-11-27 08:38:01] 2025-11-27 13:37:14,005 | INFO     | . initial setup = 7 s
[2025-11-27 08:38:01] 2025-11-27 13:37:14,005 | INFO     | . payload setup = 68 s
[2025-11-27 08:38:01] 2025-11-27 13:37:14,005 | INFO     | . stage-in = 0 s
[2025-11-27 08:38:01] 2025-11-27 13:37:14,005 | INFO     | . payload execution = 30736 s
[2025-11-27 08:38:01] 2025-11-27 13:37:14,005 | INFO     | . stage-out = 5 s
[2025-11-27 08:38:01] 2025-11-27 13:37:14,005 | INFO     | . log creation = 1 s
[2025-11-27 08:38:01] 2025-11-27 13:37:14,005 | INFO     | ..............................
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | 
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | job summary report
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | --------------------------------------------------
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | PanDA job id: 6897373274
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | task id: 47556161
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | errors: (none)
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | pilot state: finished 
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | transexitcode: 0
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | exeerrorcode: 0
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | exeerrordiag: 
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | exitcode: 0
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | exitmsg: OK
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | cpuconsumptiontime: 138386 s
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | nevents: 1000
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | neventsw: 0
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | pid: 1786197
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | pgrp: 1786197
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | corecount: 12
[2025-11-27 08:38:01] 2025-11-27 13:37:14,206 | INFO     | event service: False
[2025-11-27 08:38:01] 2025-11-27 13:37:14,207 | INFO     | sizes: {0: 2284088, 1: 2284287, 11: 2284287, 22: 2284315, 31: 2284605, 33: 2284633, 30808: 2323971, 30816: 2332965, 30818: 2333021, 30847: 2333267}
[2025-11-27 08:38:01] 2025-11-27 13:37:14,207 | INFO     | --------------------------------------------------
[2025-11-27 08:38:01] 2025-11-27 13:37:14,207 | INFO     | 
[2025-11-27 08:38:01] 2025-11-27 13:37:14,207 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-27 08:38:01] 2025-11-27 13:37:14,284 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,284 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,284 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,284 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,284 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,284 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,284 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,285 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,285 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,285 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,285 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,285 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,285 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,285 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,285 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,285 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,285 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,285 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 08:38:01] 2025-11-27 13:37:14,285 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,285 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 08:38:01] 2025-11-27 13:37:14,285 | INFO     | job 6897373274 has completed (purged errors)
[2025-11-27 08:38:01] 2025-11-27 13:37:14,285 | INFO     | overall cleanup function is called
[2025-11-27 08:38:01] 2025-11-27 13:37:15,304 | INFO     | --- collectZombieJob: --- 10, [1786197]
[2025-11-27 08:38:01] 2025-11-27 13:37:15,304 | INFO     | zombie collector waiting for pid 1786197
[2025-11-27 08:38:01] 2025-11-27 13:37:15,304 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 08:38:01] 2025-11-27 13:37:15,305 | INFO     | collected zombie processes
[2025-11-27 08:38:01] 2025-11-27 13:37:15,305 | INFO     | will attempt to kill all subprocesses of pid=1786197
[2025-11-27 08:38:01] 2025-11-27 13:37:16,162 | INFO     | process IDs to be killed: [1786197] (in reverse order)
[2025-11-27 08:38:01] 2025-11-27 13:37:16,392 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 08:38:01] 2025-11-27 13:37:16,392 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 08:38:01] 2025-11-27 13:37:16,412 | INFO     | did not find any defunct processes belonging to 1786197
[2025-11-27 08:38:01] 2025-11-27 13:37:16,430 | INFO     | did not find any defunct processes belonging to 1786197
[2025-11-27 08:38:01] 2025-11-27 13:37:16,432 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 08:38:01] 2025-11-27 13:37:16,432 | INFO     | ready for new job
[2025-11-27 08:38:01] 2025-11-27 13:37:16,432 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 08:38:01] 2025-11-27 13:37:16,434 | INFO     | ***************************************
[2025-11-27 08:38:01] 2025-11-27 13:37:16,434 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 08:38:01] 2025-11-27 13:37:16,434 | INFO     | ***************************************
[2025-11-27 08:38:01] 2025-11-27 13:37:16,434 | INFO     | 
[2025-11-27 08:38:01] 2025-11-27 13:37:16,438 | INFO     | architecture information:
[2025-11-27 08:38:01] 2025-11-27 13:37:16,439 | INFO     | executing command: cat /etc/os-release
[2025-11-27 08:38:01] 2025-11-27 13:37:16,530 | INFO     | cat /etc/os-release:
[2025-11-27 08:38:01] NAME="CentOS Linux"
[2025-11-27 08:38:01] VERSION="7 (Core)"
[2025-11-27 08:38:01] ID="centos"
[2025-11-27 08:38:01] ID_LIKE="rhel fedora"
[2025-11-27 08:38:01] VERSION_ID="7"
[2025-11-27 08:38:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 08:38:01] ANSI_COLOR="0;31"
[2025-11-27 08:38:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 08:38:01] HOME_URL="https://www.centos.org/"
[2025-11-27 08:38:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 08:38:01] 
[2025-11-27 08:38:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 08:38:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 08:38:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 08:38:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 08:38:01] 
[2025-11-27 08:38:01] 2025-11-27 13:37:16,531 | INFO     | ***************************************
[2025-11-27 08:38:01] 2025-11-27 13:37:17,034 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-27 08:38:01] 2025-11-27 13:37:17,117 | INFO     | sufficient remaining disk space (163376529408 B)
[2025-11-27 08:38:01] 2025-11-27 13:37:17,117 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 08:38:01] 2025-11-27 13:37:17,117 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 08:38:01] 2025-11-27 13:37:17,117 | INFO     | update_server=False
[2025-11-27 08:38:01] 2025-11-27 13:37:17,117 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 08:38:01] 2025-11-27 13:37:17,596 | INFO     | all payload control threads have been joined
[2025-11-27 08:38:01] 2025-11-27 13:37:17,921 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:38:01] 2025-11-27 13:37:17,922 | INFO     | aborting loop
[2025-11-27 08:38:01] 2025-11-27 13:37:17,999 | INFO     | all data control threads have been joined
[2025-11-27 08:38:01] 2025-11-27 13:37:18,123 | INFO     | [job] retrieve thread has finished
[2025-11-27 08:38:01] 2025-11-27 13:37:18,171 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 08:38:01] 2025-11-27 13:37:18,188 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 08:38:01] 2025-11-27 13:37:18,248 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 08:38:01] 2025-11-27 13:37:18,289 | INFO     | [payload] validate_post thread has finished
[2025-11-27 08:38:01] 2025-11-27 13:37:18,290 | INFO     | [payload] failed_post thread has finished
[2025-11-27 08:38:01] 2025-11-27 13:37:18,434 | INFO     | all job control threads have been joined
[2025-11-27 08:38:01] 2025-11-27 13:37:18,602 | INFO     | [payload] control thread has finished
[2025-11-27 08:38:01] 2025-11-27 13:37:18,750 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 08:38:01] 2025-11-27 13:37:18,927 | INFO     | [job] job monitor thread has finished
[2025-11-27 08:38:01] 2025-11-27 13:37:19,012 | INFO     | [data] control thread has finished
[2025-11-27 08:38:01] 2025-11-27 13:37:19,023 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 08:38:01] 2025-11-27 13:37:19,237 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:38:01] 2025-11-27 13:37:19,409 | INFO     | [data] copytool_in thread has finished
[2025-11-27 08:38:01] 2025-11-27 13:37:19,440 | INFO     | [job] control thread has finished
[2025-11-27 08:38:01] 2025-11-27 13:37:19,477 | INFO     | [job] validate thread has finished
[2025-11-27 08:38:01] 2025-11-27 13:37:19,588 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 08:38:01] 2025-11-27 13:37:20,243 | INFO     | [job] queue monitor thread has finished
[2025-11-27 08:38:01] 2025-11-27 13:37:20,261 | INFO     | [data] copytool_out thread has finished
[2025-11-27 08:38:01] 2025-11-27 13:37:22,182 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 08:38:01] 2025-11-27 13:37:46,846 | INFO     | PID=1775459 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 08:38:01] 2025-11-27 13:37:46,846 | INFO     | .. there are 29 such processes running
[2025-11-27 08:38:01] 2025-11-27 13:37:46,847 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 08:38:01] 2025-11-27 13:37:46,847 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 08:38:01] 2025-11-27 13:37:46,847 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 08:38:01] 2025-11-27 13:37:53,472 | INFO     | [monitor] cgroup control has ended
[2025-11-27 08:38:01] 2025-11-27 13:37:54,550 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139897669334848)>', '<ExcThread(monitor, started 139897310521088)>']
[2025-11-27 08:38:01] 2025-11-27 13:37:54,907 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 08:38:01] 2025-11-27 13:37:54,907 | INFO     | [monitor] control thread has ended
[2025-11-27 08:38:01] 2025-11-27 13:37:59,576 | INFO     | all workflow threads have been joined
[2025-11-27 08:38:01] 2025-11-27 13:37:59,576 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 08:38:01] 2025-11-27 13:37:59,577 | INFO     | traces error code: 0
[2025-11-27 08:38:01] 2025-11-27 13:37:59,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 08:38:01] 2025-11-27 13:37:59,856 [wrapper] ==== pilot stdout END ====
[2025-11-27 08:38:01] 2025-11-27 13:37:59,895 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 08:38:01] 2025-11-27 13:37:59,919 [wrapper] pilotpid: 1775459
[2025-11-27 08:38:01] 2025-11-27 13:37:59,944 [wrapper] Pilot exit status: 0
[2025-11-27 08:38:01] 2025-11-27 13:38:00,144 [wrapper] pandaids: 6897373274
[2025-11-27 08:38:01] 2025-11-27 13:38:00,568 [wrapper] cleanup supervisor_pilot 4092007 1775460
[2025-11-27 08:38:01] 2025-11-27 13:38:00,612 [wrapper] Test setup, not cleaning
[2025-11-27 08:38:01] 2025-11-27 13:38:00,654 [wrapper] apfmon messages muted
[2025-11-27 08:38:01] 2025-11-27 13:38:00,699 [wrapper] ==== wrapper stdout END ====
[2025-11-27 08:38:01] 2025-11-27 13:38:00,742 [wrapper] ==== wrapper stderr END ====
[2025-11-27 08:38:01]  *** Error codes and diagnostics ***
[2025-11-27 08:38:01]     "exeErrorCode": 0,
[2025-11-27 08:38:01]     "exeErrorDiag": "",
[2025-11-27 08:38:01]     "pilotErrorCode": 0,
[2025-11-27 08:38:01]     "pilotErrorDiag": "",
[2025-11-27 08:38:01]  *** Listing of results directory ***
[2025-11-27 08:38:01] total 1307856
[2025-11-27 08:38:01] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 08:38:01] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 08:38:01] -rwx------. 1 boincer umatlas     36292 Nov 25 11:55 runpilot2-wrapper.sh
[2025-11-27 08:38:01] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 08:38:01] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:00 run_atlas
[2025-11-27 08:38:01] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:00 job.xml
[2025-11-27 08:38:01] -rw-r--r--. 2 boincer umatlas 409783123 Nov 27 00:00 EVNT.47483658._002215.pool.root.1
[2025-11-27 08:38:01] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:00 shared
[2025-11-27 08:38:01] -rw-r--r--. 2 boincer umatlas    590112 Nov 27 00:00 input.tar.gz
[2025-11-27 08:38:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:00 start_atlas.sh
[2025-11-27 08:38:01] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:00 boinc_lockfile
[2025-11-27 08:38:01] -rw-r--r--. 1 boincer umatlas      2783 Nov 27 00:00 pandaJob.out
[2025-11-27 08:38:01] -rw-------. 1 boincer umatlas        57 Nov 27 00:00 setup.sh.local
[2025-11-27 08:38:01] -rw-------. 1 boincer umatlas    991570 Nov 27 00:01 agis_schedconf.cvmfs.json
[2025-11-27 08:38:01] drwx------. 5 boincer umatlas      4096 Nov 27 00:01 pilot3
[2025-11-27 08:38:01] -rw-r--r--. 1 boincer umatlas       533 Nov 27 08:15 boinc_task_state.xml
[2025-11-27 08:38:01] -rw-r--r--. 1 boincer umatlas      7176 Nov 27 08:30 init_data.xml
[2025-11-27 08:38:01] -rw-------. 1 boincer umatlas 913299760 Nov 27 08:35 HITS.47556161._001981.pool.root.1
[2025-11-27 08:38:01] -rw-------. 1 boincer umatlas      1071 Nov 27 08:36 memory_monitor_summary.json
[2025-11-27 08:38:01] -rw-------. 1 boincer umatlas   1516240 Nov 27 08:36 agis_ddmendpoints.agis.ALL.json
[2025-11-27 08:38:01] -rw-------. 1 boincer umatlas   2178722 Nov 27 08:36 log.47556161._001981.job.log.tgz.1
[2025-11-27 08:38:01] -rw-------. 1 boincer umatlas      8625 Nov 27 08:37 heartbeat.json
[2025-11-27 08:38:01] -rw-------. 1 boincer umatlas        95 Nov 27 08:37 pilot_heartbeat.json
[2025-11-27 08:38:01] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 08:37 boinc_mmap_file
[2025-11-27 08:38:01] -rw-r--r--. 1 boincer umatlas        29 Nov 27 08:37 wrapper_checkpoint.txt
[2025-11-27 08:38:01] -rw-------. 1 boincer umatlas      4825 Nov 27 08:37 pilotlog.txt
[2025-11-27 08:38:01] -rw-------. 1 boincer umatlas   3941180 Nov 27 08:38 log.47556161._001981.job.log.1
[2025-11-27 08:38:01] -rw-------. 1 boincer umatlas       353 Nov 27 08:38 output.list
[2025-11-27 08:38:01] -rw-r--r--. 1 boincer umatlas       620 Nov 27 08:38 runtime_log
[2025-11-27 08:38:01] -rw-------. 1 boincer umatlas   6144000 Nov 27 08:38 result.tar.gz
[2025-11-27 08:38:01] -rw-r--r--. 1 boincer umatlas      9345 Nov 27 08:38 runtime_log.err
[2025-11-27 08:38:01] -rw-------. 1 boincer umatlas       666 Nov 27 08:38 Ql3NDmKVBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZUJKDm898HRm.diag
[2025-11-27 08:38:01] -rw-r--r--. 1 boincer umatlas     21878 Nov 27 08:38 stderr.txt
[2025-11-27 08:38:01] HITS file was successfully produced:
[2025-11-27 08:38:01] -rw-------. 1 boincer umatlas 913299760 Nov 27 08:35 shared/HITS.pool.root.1
[2025-11-27 08:38:01]  *** Contents of shared directory: ***
[2025-11-27 08:38:01] total 1298676
[2025-11-27 08:38:01] -rw-r--r--. 2 boincer umatlas 409783123 Nov 27 00:00 ATLAS.root_0
[2025-11-27 08:38:01] -rw-r--r--. 2 boincer umatlas    590112 Nov 27 00:00 input.tar.gz
[2025-11-27 08:38:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:00 start_atlas.sh
[2025-11-27 08:38:01] -rw-------. 1 boincer umatlas 913299760 Nov 27 08:35 HITS.pool.root.1
[2025-11-27 08:38:01] -rw-------. 1 boincer umatlas   6144000 Nov 27 08:38 result.tar.gz
08:38:03 (1771003): run_atlas exited; CPU time 138540.963486
08:38:03 (1771003): called boinc_finish(0)

</stderr_txt>
]]>

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