Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:36:30 (28071): wrapper (7.7.26015): starting
19:36:30 (28071): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 19:36:30] Arguments: --nthreads 8
[2025-11-26 19:36:30] Threads: 8
[2025-11-26 19:36:30] Checking for CVMFS
[2025-11-26 19:36:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:36:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:36:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:36:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:36:31] 2.11.2.0 28705 118571 144668 153341 3 90 10628940 18432000 1885 130560 0 87101505 99.975 5046476 32092 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 19:36:31] CVMFS is ok
[2025-11-26 19:36:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:36:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:36:31] Further information can be found at the LHC@home message board.
[2025-11-26 19:36:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:36:31] Checking for apptainer binary...
[2025-11-26 19:36:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:36:31] Running /usr/bin/apptainer --version
[2025-11-26 19:36:31] apptainer version 1.3.2-1.el7
[2025-11-26 19:36:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:36:31] c-206-27.aglt2.org
[2025-11-26 19:36:31] apptainer works
[2025-11-26 19:36:31] Set ATHENA_PROC_NUMBER=8
[2025-11-26 19:36:31] Set ATHENA_CORE_NUMBER=8
[2025-11-26 19:36:31] Starting ATLAS job with PandaID=6893837763
[2025-11-26 19:36:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:05:45]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:05:45] 2025-11-27 20:05:04,197 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:05:45] 2025-11-27 20:05:04,305 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 15:05:45] 2025-11-27 20:05:04,309 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2483.4166666666665
[2025-11-27 15:05:45] 2025-11-27 20:05:04,311 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6893837763/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 15:05:45] 2025-11-27 20:05:04,312 | INFO     | extracted standard info from prmon json
[2025-11-27 15:05:45] 2025-11-27 20:05:04,312 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 15:05:45] 2025-11-27 20:05:04,312 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 15:05:45] 2025-11-27 20:05:04,328 | INFO     | fitting pss+swap vs Time
[2025-11-27 15:05:45] 2025-11-27 20:05:04,329 | INFO     | sum of square deviations: 470366779676.3252
[2025-11-27 15:05:45] 2025-11-27 20:05:04,353 | INFO     | sum of deviations: 2317732481052.8013
[2025-11-27 15:05:45] 2025-11-27 20:05:04,353 | INFO     | mean x: 1764238843.6640556
[2025-11-27 15:05:45] 2025-11-27 20:05:04,353 | INFO     | mean y: 2868850.2663185378
[2025-11-27 15:05:45] 2025-11-27 20:05:04,353 | INFO     | intersect: -8690418705.264315
[2025-11-27 15:05:45] 2025-11-27 20:05:04,354 | INFO     | chi2: 5.561371104567738
[2025-11-27 15:05:45] 2025-11-27 20:05:04,355 | INFO     | sum of square deviations: 464253111709.1109
[2025-11-27 15:05:45] 2025-11-27 20:05:04,379 | INFO     | sum of deviations: 2660061421003.0957
[2025-11-27 15:05:45] 2025-11-27 20:05:04,379 | INFO     | mean x: 1764238691.166958
[2025-11-27 15:05:45] 2025-11-27 20:05:04,379 | INFO     | mean y: 2877386.208916084
[2025-11-27 15:05:45] 2025-11-27 20:05:04,379 | INFO     | intersect: -10105796441.603193
[2025-11-27 15:05:45] 2025-11-27 20:05:04,380 | INFO     | chi2: 2.9300242540341506
[2025-11-27 15:05:45] 2025-11-27 20:05:04,380 | INFO     | current chi2=2.9300242540341506 (change=47.314714322379515 %)
[2025-11-27 15:05:45] 2025-11-27 20:05:04,381 | INFO     | sum of square deviations: 458192654041.87683
[2025-11-27 15:05:45] 2025-11-27 20:05:04,404 | INFO     | sum of deviations: 2762414999300.5615
[2025-11-27 15:05:45] 2025-11-27 20:05:04,405 | INFO     | mean x: 1764238538.6698859
[2025-11-27 15:05:45] 2025-11-27 20:05:04,405 | INFO     | mean y: 2879957.7568042143
[2025-11-27 15:05:45] 2025-11-27 20:05:04,405 | INFO     | intersect: -10633604408.75243
[2025-11-27 15:05:45] 2025-11-27 20:05:04,406 | INFO     | chi2: 2.524303392979869
[2025-11-27 15:05:45] 2025-11-27 20:05:04,406 | INFO     | current chi2=2.524303392979869 (change=13.847013740438236 %)
[2025-11-27 15:05:45] 2025-11-27 20:05:04,406 | INFO     | right removable region: 1138
[2025-11-27 15:05:45] 2025-11-27 20:05:04,407 | INFO     | sum of square deviations: 464252646279.11096
[2025-11-27 15:05:45] 2025-11-27 20:05:04,445 | INFO     | sum of deviations: 2010071036720.1099
[2025-11-27 15:05:45] 2025-11-27 20:05:04,445 | INFO     | mean x: 1764238996.166958
[2025-11-27 15:05:45] 2025-11-27 20:05:04,446 | INFO     | mean y: 2876516.1564685316
[2025-11-27 15:05:45] 2025-11-27 20:05:04,446 | INFO     | intersect: -7635735210.60436
[2025-11-27 15:05:45] 2025-11-27 20:05:04,447 | INFO     | chi2: 3.449924698049321
[2025-11-27 15:05:45] 2025-11-27 20:05:04,448 | INFO     | current chi2=3.449924698049321 (change=37.96629224732398 %)
[2025-11-27 15:05:45] 2025-11-27 20:05:04,449 | INFO     | sum of square deviations: 458192002075.22266
[2025-11-27 15:05:45] 2025-11-27 20:05:04,491 | INFO     | sum of deviations: 1917184642966.702
[2025-11-27 15:05:45] 2025-11-27 20:05:04,491 | INFO     | mean x: 1764239148.666374
[2025-11-27 15:05:45] 2025-11-27 20:05:04,491 | INFO     | mean y: 2878853.1018437226
[2025-11-27 15:05:45] 2025-11-27 20:05:04,491 | INFO     | intersect: -7379118621.809398
[2025-11-27 15:05:45] 2025-11-27 20:05:04,493 | INFO     | chi2: 3.3577848216258745
[2025-11-27 15:05:45] 2025-11-27 20:05:04,493 | INFO     | current chi2=3.3577848216258745 (change=2.6707793499244943 %)
[2025-11-27 15:05:45] 2025-11-27 20:05:04,493 | INFO     | left removable region: 20
[2025-11-27 15:05:45] 2025-11-27 20:05:04,495 | INFO     | sum of square deviations: 433313300633.6827
[2025-11-27 15:05:45] 2025-11-27 20:05:04,536 | INFO     | sum of deviations: 2227706818955.798
[2025-11-27 15:05:45] 2025-11-27 20:05:04,536 | INFO     | mean x: 1764239118.1726296
[2025-11-27 15:05:45] 2025-11-27 20:05:04,537 | INFO     | mean y: 2893716.4051878355
[2025-11-27 15:05:45] 2025-11-27 20:05:04,537 | INFO     | intersect: -9067235236.650597
[2025-11-27 15:05:45] 2025-11-27 20:05:04,538 | INFO     | chi2: 0.2404574080866467
[2025-11-27 15:05:45] 2025-11-27 20:05:04,539 | INFO     | current memory leak: 5.14 B/s (using 1118 data points, chi2=0.24)
[2025-11-27 15:05:45] 2025-11-27 20:05:04,540 | INFO     | could have reported an average CPU frequency of 2624 MHz (42 samples)
[2025-11-27 15:05:45] 2025-11-27 20:05:04,540 | INFO     | ..............................
[2025-11-27 15:05:45] 2025-11-27 20:05:04,540 | INFO     | . Timing measurements:
[2025-11-27 15:05:45] 2025-11-27 20:05:04,540 | INFO     | . get job = 0 s
[2025-11-27 15:05:45] 2025-11-27 20:05:04,541 | INFO     | . initial setup = 2 s
[2025-11-27 15:05:45] 2025-11-27 20:05:04,541 | INFO     | . payload setup = 5 s
[2025-11-27 15:05:45] 2025-11-27 20:05:04,541 | INFO     | . stage-in = 0 s
[2025-11-27 15:05:45] 2025-11-27 20:05:04,541 | INFO     | . payload execution = 70067 s
[2025-11-27 15:05:45] 2025-11-27 20:05:04,541 | INFO     | . stage-out = 4 s
[2025-11-27 15:05:45] 2025-11-27 20:05:04,541 | INFO     | . log creation = 0 s
[2025-11-27 15:05:45] 2025-11-27 20:05:04,542 | INFO     | ..............................
[2025-11-27 15:05:45] 2025-11-27 20:05:04,813 | INFO     | 
[2025-11-27 15:05:45] 2025-11-27 20:05:04,813 | INFO     | job summary report
[2025-11-27 15:05:45] 2025-11-27 20:05:04,813 | INFO     | --------------------------------------------------
[2025-11-27 15:05:45] 2025-11-27 20:05:04,814 | INFO     | PanDA job id: 6893837763
[2025-11-27 15:05:45] 2025-11-27 20:05:04,814 | INFO     | task id: 47523449
[2025-11-27 15:05:45] 2025-11-27 20:05:04,814 | INFO     | errors: (none)
[2025-11-27 15:05:45] 2025-11-27 20:05:04,814 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:05:45] 2025-11-27 20:05:04,814 | INFO     | pilot state: finished 
[2025-11-27 15:05:45] 2025-11-27 20:05:04,814 | INFO     | transexitcode: 0
[2025-11-27 15:05:45] 2025-11-27 20:05:04,815 | INFO     | exeerrorcode: 0
[2025-11-27 15:05:45] 2025-11-27 20:05:04,815 | INFO     | exeerrordiag: 
[2025-11-27 15:05:45] 2025-11-27 20:05:04,815 | INFO     | exitcode: 0
[2025-11-27 15:05:45] 2025-11-27 20:05:04,815 | INFO     | exitmsg: OK
[2025-11-27 15:05:45] 2025-11-27 20:05:04,815 | INFO     | cpuconsumptiontime: 539145 s
[2025-11-27 15:05:45] 2025-11-27 20:05:04,815 | INFO     | nevents: 1000
[2025-11-27 15:05:45] 2025-11-27 20:05:04,815 | INFO     | neventsw: 0
[2025-11-27 15:05:45] 2025-11-27 20:05:04,816 | INFO     | pid: 6123
[2025-11-27 15:05:45] 2025-11-27 20:05:04,816 | INFO     | pgrp: 6123
[2025-11-27 15:05:45] 2025-11-27 20:05:04,816 | INFO     | corecount: 8
[2025-11-27 15:05:45] 2025-11-27 20:05:04,816 | INFO     | event service: False
[2025-11-27 15:05:45] 2025-11-27 20:05:04,816 | INFO     | sizes: {0: 2284088, 1: 2284343, 2: 2284343, 5: 2284633, 12: 2284689, 70076: 2341287, 70077: 2341414, 70081: 2350520, 70086: 2350710}
[2025-11-27 15:05:45] 2025-11-27 20:05:04,816 | INFO     | --------------------------------------------------
[2025-11-27 15:05:45] 2025-11-27 20:05:04,816 | INFO     | 
[2025-11-27 15:05:45] 2025-11-27 20:05:04,817 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 15:05:45] 2025-11-27 20:05:04,844 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,844 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,845 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,845 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,845 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,845 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,845 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,846 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,846 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,846 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,846 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,846 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,846 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,847 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,847 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,847 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,847 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,847 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:05:45] 2025-11-27 20:05:04,847 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,848 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:05:45] 2025-11-27 20:05:04,848 | INFO     | job 6893837763 has completed (purged errors)
[2025-11-27 15:05:45] 2025-11-27 20:05:04,848 | INFO     | overall cleanup function is called
[2025-11-27 15:05:45] 2025-11-27 20:05:05,864 | INFO     | --- collectZombieJob: --- 10, [6123]
[2025-11-27 15:05:45] 2025-11-27 20:05:05,864 | INFO     | zombie collector waiting for pid 6123
[2025-11-27 15:05:45] 2025-11-27 20:05:05,864 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:05:45] 2025-11-27 20:05:05,865 | INFO     | collected zombie processes
[2025-11-27 15:05:45] 2025-11-27 20:05:05,865 | INFO     | will attempt to kill all subprocesses of pid=6123
[2025-11-27 15:05:45] 2025-11-27 20:05:06,023 | INFO     | process IDs to be killed: [6123] (in reverse order)
[2025-11-27 15:05:45] 2025-11-27 20:05:06,072 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:05:45] 2025-11-27 20:05:06,073 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:05:45] 2025-11-27 20:05:06,075 | INFO     | did not find any defunct processes belonging to 6123
[2025-11-27 15:05:45] 2025-11-27 20:05:06,078 | INFO     | did not find any defunct processes belonging to 6123
[2025-11-27 15:05:45] 2025-11-27 20:05:06,079 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:05:45] 2025-11-27 20:05:06,079 | INFO     | ready for new job
[2025-11-27 15:05:45] 2025-11-27 20:05:06,080 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:05:45] 2025-11-27 20:05:06,083 | INFO     | ***************************************
[2025-11-27 15:05:45] 2025-11-27 20:05:06,083 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:05:45] 2025-11-27 20:05:06,084 | INFO     | ***************************************
[2025-11-27 15:05:45] 2025-11-27 20:05:06,084 | INFO     | 
[2025-11-27 15:05:45] 2025-11-27 20:05:06,084 | INFO     | architecture information:
[2025-11-27 15:05:45] 2025-11-27 20:05:06,085 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:05:45] 2025-11-27 20:05:06,094 | INFO     | cat /etc/os-release:
[2025-11-27 15:05:45] NAME="CentOS Linux"
[2025-11-27 15:05:45] VERSION="7 (Core)"
[2025-11-27 15:05:45] ID="centos"
[2025-11-27 15:05:45] ID_LIKE="rhel fedora"
[2025-11-27 15:05:45] VERSION_ID="7"
[2025-11-27 15:05:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:05:45] ANSI_COLOR="0;31"
[2025-11-27 15:05:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:05:45] HOME_URL="https://www.centos.org/"
[2025-11-27 15:05:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:05:45] 
[2025-11-27 15:05:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:05:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:05:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:05:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:05:45] 
[2025-11-27 15:05:45] 2025-11-27 20:05:06,094 | INFO     | ***************************************
[2025-11-27 15:05:45] 2025-11-27 20:05:06,596 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 15:05:45] 2025-11-27 20:05:06,611 | INFO     | sufficient remaining disk space (26672627712 B)
[2025-11-27 15:05:45] 2025-11-27 20:05:06,612 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:05:45] 2025-11-27 20:05:06,612 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:05:45] 2025-11-27 20:05:06,612 | INFO     | update_server=False
[2025-11-27 15:05:45] 2025-11-27 20:05:06,612 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:05:45] 2025-11-27 20:05:06,613 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:05:45] 2025-11-27 20:05:06,613 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:05:45] 2025-11-27 20:05:06,701 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 15:05:45] 2025-11-27 20:05:06,701 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 15:05:45] 2025-11-27 20:05:06,702 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:05:45] 2025-11-27 20:05:06,702 | INFO     | will abort loop
[2025-11-27 15:05:45] 2025-11-27 20:05:06,792 | INFO     | all payload control threads have been joined
[2025-11-27 15:05:45] 2025-11-27 20:05:07,076 | INFO     | all job control threads have been joined
[2025-11-27 15:05:45] 2025-11-27 20:05:07,196 | INFO     | all data control threads have been joined
[2025-11-27 15:05:45] 2025-11-27 20:05:07,614 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:05:45] 2025-11-27 20:05:07,614 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:05:45] 2025-11-27 20:05:07,635 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:05:45] 2025-11-27 20:05:07,664 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:05:45] 2025-11-27 20:05:07,708 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:05:45] 2025-11-27 20:05:07,798 | INFO     | [payload] control thread has finished
[2025-11-27 15:05:45] 2025-11-27 20:05:08,082 | INFO     | [job] control thread has finished
[2025-11-27 15:05:45] 2025-11-27 20:05:08,197 | INFO     | [data] control thread has finished
[2025-11-27 15:05:45] 2025-11-27 20:05:08,212 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:05:45] 2025-11-27 20:05:08,224 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:05:45] 2025-11-27 20:05:08,296 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:05:45] 2025-11-27 20:05:08,297 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:05:45] 2025-11-27 20:05:08,402 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:05:45] 2025-11-27 20:05:08,403 | INFO     | [job] validate thread has finished
[2025-11-27 15:05:45] 2025-11-27 20:05:08,574 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:05:45] 2025-11-27 20:05:09,640 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:05:45] 2025-11-27 20:05:10,623 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:05:45] 2025-11-27 20:05:37,219 | INFO     | PID=31766 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 15:05:45] 2025-11-27 20:05:37,220 | INFO     | .. there are 3 such processes running
[2025-11-27 15:05:45] 2025-11-27 20:05:37,231 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:05:45] 2025-11-27 20:05:37,231 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:05:45] 2025-11-27 20:05:37,232 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:05:45] 2025-11-27 20:05:38,508 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:05:45] 2025-11-27 20:05:40,101 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139978954856256)>', '<ExcThread(monitor, started 139978646464256)>']
[2025-11-27 15:05:45] 2025-11-27 20:05:40,247 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:05:45] 2025-11-27 20:05:40,247 | INFO     | [monitor] control thread has ended
[2025-11-27 15:05:45] 2025-11-27 20:05:45,127 | INFO     | all workflow threads have been joined
[2025-11-27 15:05:45] 2025-11-27 20:05:45,127 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:05:45] 2025-11-27 20:05:45,127 | INFO     | traces error code: 0
[2025-11-27 15:05:45] 2025-11-27 20:05:45,128 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:05:45] 2025-11-27 20:05:45,239 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:05:45] 2025-11-27 20:05:45,241 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:05:45] 2025-11-27 20:05:45,243 [wrapper] pilotpid: 31766
[2025-11-27 15:05:45] 2025-11-27 20:05:45,246 [wrapper] Pilot exit status: 0
[2025-11-27 15:05:45] 2025-11-27 20:05:45,254 [wrapper] pandaids: 6893837763
[2025-11-27 15:05:45] 2025-11-27 20:05:45,293 [wrapper] cleanup supervisor_pilot  5685 31767
[2025-11-27 15:05:45] 2025-11-27 20:05:45,297 [wrapper] Test setup, not cleaning
[2025-11-27 15:05:45] 2025-11-27 20:05:45,300 [wrapper] apfmon messages muted
[2025-11-27 15:05:45] 2025-11-27 20:05:45,302 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:05:45] 2025-11-27 20:05:45,305 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:05:45]  *** Error codes and diagnostics ***
[2025-11-27 15:05:45]     "exeErrorCode": 0,
[2025-11-27 15:05:45]     "exeErrorDiag": "",
[2025-11-27 15:05:45]     "pilotErrorCode": 0,
[2025-11-27 15:05:45]     "pilotErrorDiag": "",
[2025-11-27 15:05:45]  *** Listing of results directory ***
[2025-11-27 15:05:45] total 1330156
[2025-11-27 15:05:45] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-27 15:05:45] -rwx------ 1 boincer umatlas     36292 Nov 20 05:16 runpilot2-wrapper.sh
[2025-11-27 15:05:45] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 05:17 queuedata.json
[2025-11-27 15:05:45] -rw-r--r-- 1 boincer umatlas       100 Nov 26 19:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:05:45] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 19:36 run_atlas
[2025-11-27 15:05:45] -rw-r--r-- 1 boincer umatlas       105 Nov 26 19:36 job.xml
[2025-11-27 15:05:45] -rw-r--r-- 2 boincer umatlas 411181183 Nov 26 19:36 EVNT.47493127._000121.pool.root.1
[2025-11-27 15:05:45] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 19:36 start_atlas.sh
[2025-11-27 15:05:45] drwxrwx--x 2 boincer umatlas      4096 Nov 26 19:36 shared
[2025-11-27 15:05:45] -rw-r--r-- 2 boincer umatlas    590098 Nov 26 19:36 input.tar.gz
[2025-11-27 15:05:45] -rw-r--r-- 1 boincer umatlas         0 Nov 26 19:36 boinc_lockfile
[2025-11-27 15:05:45] -rw-r--r-- 1 boincer umatlas      2786 Nov 26 19:36 pandaJob.out
[2025-11-27 15:05:45] -rw------- 1 boincer umatlas        57 Nov 26 19:36 setup.sh.local
[2025-11-27 15:05:45] -rw------- 1 boincer umatlas    991546 Nov 26 19:36 agis_schedconf.cvmfs.json
[2025-11-27 15:05:45] drwx------ 5 boincer umatlas      4096 Nov 26 19:36 pilot3
[2025-11-27 15:05:45] -rw-r--r-- 1 boincer umatlas       533 Nov 27 14:53 boinc_task_state.xml
[2025-11-27 15:05:45] -rw-r--r-- 1 boincer umatlas      5954 Nov 27 15:00 init_data.xml
[2025-11-27 15:05:45] -rw------- 1 boincer umatlas 922944900 Nov 27 15:04 HITS.47523449._001209.pool.root.1
[2025-11-27 15:05:45] -rw------- 1 boincer umatlas        95 Nov 27 15:04 pilot_heartbeat.json
[2025-11-27 15:05:45] -rw------- 1 boincer umatlas      1065 Nov 27 15:04 memory_monitor_summary.json
[2025-11-27 15:05:45] -rw------- 1 boincer umatlas   1516240 Nov 27 15:04 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:05:45] -rw------- 1 boincer umatlas   2309140 Nov 27 15:04 log.47523449._001209.job.log.tgz.1
[2025-11-27 15:05:45] -rw------- 1 boincer umatlas      8657 Nov 27 15:05 heartbeat.json
[2025-11-27 15:05:45] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 15:05 boinc_mmap_file
[2025-11-27 15:05:45] -rw-r--r-- 1 boincer umatlas        29 Nov 27 15:05 wrapper_checkpoint.txt
[2025-11-27 15:05:45] -rw------- 1 boincer umatlas      5007 Nov 27 15:05 pilotlog.txt
[2025-11-27 15:05:45] -rw------- 1 boincer umatlas   9705144 Nov 27 15:05 log.47523449._001209.job.log.1
[2025-11-27 15:05:45] -rw------- 1 boincer umatlas       353 Nov 27 15:05 output.list
[2025-11-27 15:05:45] -rw-r--r-- 1 boincer umatlas       620 Nov 27 15:05 runtime_log
[2025-11-27 15:05:45] -rw------- 1 boincer umatlas  12032000 Nov 27 15:05 result.tar.gz
[2025-11-27 15:05:45] -rw-r--r-- 1 boincer umatlas      9343 Nov 27 15:05 runtime_log.err
[2025-11-27 15:05:45] -rw------- 1 boincer umatlas       668 Nov 27 15:05 jQhKDmbtGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZGHKDmuZRPMo.diag
[2025-11-27 15:05:45] -rw-r--r-- 1 boincer umatlas     21306 Nov 27 15:05 stderr.txt
[2025-11-27 15:05:45] HITS file was successfully produced:
[2025-11-27 15:05:45] -rw------- 1 boincer umatlas 922944900 Nov 27 15:04 shared/HITS.pool.root.1
[2025-11-27 15:05:45]  *** Contents of shared directory: ***
[2025-11-27 15:05:45] total 1315220
[2025-11-27 15:05:45] -rw-r--r-- 2 boincer umatlas 411181183 Nov 26 19:36 ATLAS.root_0
[2025-11-27 15:05:45] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 19:36 start_atlas.sh
[2025-11-27 15:05:45] -rw-r--r-- 2 boincer umatlas    590098 Nov 26 19:36 input.tar.gz
[2025-11-27 15:05:45] -rw------- 1 boincer umatlas 922944900 Nov 27 15:04 HITS.pool.root.1
[2025-11-27 15:05:45] -rw------- 1 boincer umatlas  12032000 Nov 27 15:05 result.tar.gz
15:05:46 (28071): run_atlas exited; CPU time 537451.940066
15:05:46 (28071): called boinc_finish(0)

</stderr_txt>
]]>

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