Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:13:21 (3424496): wrapper (7.7.26015): starting
21:13:21 (3424496): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 21:13:21] Arguments: --nthreads 8
[2025-11-26 21:13:21] Threads: 8
[2025-11-26 21:13:21] Checking for CVMFS
[2025-11-26 21:13:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 21:13:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 21:13:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 21:13:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 21:13:23] 2.13.3.0 10121 30827 430068 153342 1 576 24826212 32935937 65680 16776704 0 349255716 99.785 181885248 27434 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 21:13:23] CVMFS is ok
[2025-11-26 21:13:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 21:13:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 21:13:23] Further information can be found at the LHC@home message board.
[2025-11-26 21:13:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 21:13:23] Checking for apptainer binary...
[2025-11-26 21:13:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 21:13:23] Running /usr/bin/apptainer --version
[2025-11-26 21:13:23] apptainer version 1.4.4-1.el9
[2025-11-26 21:13:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 21:13:24] lc-10-11.aglt2.org
[2025-11-26 21:13:24] apptainer works
[2025-11-26 21:13:24] Set ATHENA_PROC_NUMBER=8
[2025-11-26 21:13:24] Set ATHENA_CORE_NUMBER=8
[2025-11-26 21:13:24] Starting ATLAS job with PandaID=6897139676
[2025-11-26 21:13:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:45:20]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:45:20] 2025-11-28 02:44:32,804 | INFO     | time since job start (88208s) is within the limit (172800.0s)
[2025-11-27 21:45:20] 2025-11-28 02:44:34,064 | INFO     | monitor loop #4455: job 0:6897139676 is in state 'finished'
[2025-11-27 21:45:20] 2025-11-28 02:44:34,065 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:45:20] 2025-11-28 02:44:34,825 | INFO     | time since job start (88210s) is within the limit (172800.0s)
[2025-11-27 21:45:20] 2025-11-28 02:44:36,573 | INFO     | monitor loop #4456: job 0:6897139676 is in state 'finished'
[2025-11-27 21:45:20] 2025-11-28 02:44:36,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:45:20] 2025-11-28 02:44:36,832 | INFO     | time since job start (88212s) is within the limit (172800.0s)
[2025-11-27 21:45:20] 2025-11-28 02:44:38,839 | INFO     | time since job start (88214s) is within the limit (172800.0s)
[2025-11-27 21:45:20] 2025-11-28 02:44:39,084 | INFO     | monitor loop #4457: job 0:6897139676 is in state 'finished'
[2025-11-27 21:45:20] 2025-11-28 02:44:39,085 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:45:20] 2025-11-28 02:44:40,851 | INFO     | time since job start (88216s) is within the limit (172800.0s)
[2025-11-27 21:45:20] 2025-11-28 02:44:41,590 | INFO     | monitor loop #4458: job 0:6897139676 is in state 'finished'
[2025-11-27 21:45:20] 2025-11-28 02:44:41,591 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:45:20] 2025-11-28 02:44:42,879 | INFO     | time since job start (88218s) is within the limit (172800.0s)
[2025-11-27 21:45:20] 2025-11-28 02:44:44,103 | INFO     | monitor loop #4459: job 0:6897139676 is in state 'finished'
[2025-11-27 21:45:20] 2025-11-28 02:44:44,104 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:45:20] 2025-11-28 02:44:44,899 | INFO     | time since job start (88220s) is within the limit (172800.0s)
[2025-11-27 21:45:20] 2025-11-28 02:44:45,010 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 21:45:20] 2025-11-28 02:44:45,021 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2648.747406250001
[2025-11-27 21:45:20] 2025-11-28 02:44:45,039 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6897139676/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 21:45:20] 2025-11-28 02:44:45,039 | INFO     | extracted standard info from prmon json
[2025-11-27 21:45:20] 2025-11-28 02:44:45,040 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 21:45:20] 2025-11-28 02:44:45,040 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 21:45:20] 2025-11-28 02:44:45,067 | INFO     | fitting pss+swap vs Time
[2025-11-27 21:45:20] 2025-11-28 02:44:45,069 | INFO     | sum of square deviations: 933639276813.9991
[2025-11-27 21:45:20] 2025-11-28 02:44:45,105 | INFO     | sum of deviations: 3207325329152.1064
[2025-11-27 21:45:20] 2025-11-28 02:44:45,105 | INFO     | mean x: 1764253818.4210527
[2025-11-27 21:45:20] 2025-11-28 02:44:45,105 | INFO     | mean y: 2885132.1281163436
[2025-11-27 21:45:20] 2025-11-28 02:44:45,105 | INFO     | intersect: -6057845279.926372
[2025-11-27 21:45:20] 2025-11-28 02:44:45,107 | INFO     | chi2: 18.387222826988186
[2025-11-27 21:45:20] 2025-11-28 02:44:45,109 | INFO     | sum of square deviations: 923975619256.1891
[2025-11-27 21:45:20] 2025-11-28 02:44:45,162 | INFO     | sum of deviations: 3718888147985.198
[2025-11-27 21:45:20] 2025-11-28 02:44:45,163 | INFO     | mean x: 1764253665.9312022
[2025-11-27 21:45:20] 2025-11-28 02:44:45,163 | INFO     | mean y: 2893202.7394023626
[2025-11-27 21:45:20] 2025-11-28 02:44:45,163 | INFO     | intersect: -7098010664.781165
[2025-11-27 21:45:20] 2025-11-28 02:44:45,165 | INFO     | chi2: 14.877493138768118
[2025-11-27 21:45:20] 2025-11-28 02:44:45,165 | INFO     | current chi2=14.877493138768118 (change=19.08787271054657 %)
[2025-11-27 21:45:20] 2025-11-28 02:44:45,165 | INFO     | right removable region: 1438
[2025-11-27 21:45:20] 2025-11-28 02:44:45,167 | INFO     | sum of square deviations: 923973046276.1886
[2025-11-27 21:45:20] 2025-11-28 02:44:45,207 | INFO     | sum of deviations: 2638238676818.0996
[2025-11-27 21:45:20] 2025-11-28 02:44:45,207 | INFO     | mean x: 1764253970.9312022
[2025-11-27 21:45:20] 2025-11-28 02:44:45,207 | INFO     | mean y: 2894109.425295344
[2025-11-27 21:45:20] 2025-11-28 02:44:45,207 | INFO     | intersect: -5034615459.278412
[2025-11-27 21:45:20] 2025-11-28 02:44:45,210 | INFO     | chi2: 14.389584663138464
[2025-11-27 21:45:20] 2025-11-28 02:44:45,210 | INFO     | current chi2=14.389584663138464 (change=21.741391842938427 %)
[2025-11-27 21:45:20] 2025-11-28 02:44:45,210 | INFO     | left removable region: 10
[2025-11-27 21:45:20] 2025-11-28 02:44:45,212 | INFO     | sum of square deviations: 902945698055.9495
[2025-11-27 21:45:20] 2025-11-28 02:44:45,268 | INFO     | sum of deviations: 2747041915934.1772
[2025-11-27 21:45:20] 2025-11-28 02:44:45,268 | INFO     | mean x: 1764253940.4537816
[2025-11-27 21:45:20] 2025-11-28 02:44:45,268 | INFO     | mean y: 2911518.654061625
[2025-11-27 21:45:20] 2025-11-28 02:44:45,269 | INFO     | intersect: -5364498210.64981
[2025-11-27 21:45:20] 2025-11-28 02:44:45,271 | INFO     | chi2: 7.338760275566269
[2025-11-27 21:45:20] 2025-11-28 02:44:45,271 | INFO     | current memory leak: 3.04 B/s (using 1428 data points, chi2=7.34)
[2025-11-27 21:45:20] 2025-11-28 02:44:45,273 | INFO     | could have reported an average CPU frequency of 2701 MHz (51 samples)
[2025-11-27 21:45:20] 2025-11-28 02:44:45,273 | INFO     | ..............................
[2025-11-27 21:45:20] 2025-11-28 02:44:45,273 | INFO     | . Timing measurements:
[2025-11-27 21:45:20] 2025-11-28 02:44:45,273 | INFO     | . get job = 0 s
[2025-11-27 21:45:20] 2025-11-28 02:44:45,273 | INFO     | . initial setup = 5 s
[2025-11-27 21:45:20] 2025-11-28 02:44:45,273 | INFO     | . payload setup = 44 s
[2025-11-27 21:45:20] 2025-11-28 02:44:45,273 | INFO     | . stage-in = 0 s
[2025-11-27 21:45:20] 2025-11-28 02:44:45,273 | INFO     | . payload execution = 88065 s
[2025-11-27 21:45:20] 2025-11-28 02:44:45,273 | INFO     | . stage-out = 12 s
[2025-11-27 21:45:20] 2025-11-28 02:44:45,274 | INFO     | . log creation = 1 s
[2025-11-27 21:45:20] 2025-11-28 02:44:45,274 | INFO     | ..............................
[2025-11-27 21:45:20] 2025-11-28 02:44:45,374 | INFO     | 
[2025-11-27 21:45:20] 2025-11-28 02:44:45,374 | INFO     | job summary report
[2025-11-27 21:45:20] 2025-11-28 02:44:45,375 | INFO     | --------------------------------------------------
[2025-11-27 21:45:20] 2025-11-28 02:44:45,375 | INFO     | PanDA job id: 6897139676
[2025-11-27 21:45:20] 2025-11-28 02:44:45,375 | INFO     | task id: 47556161
[2025-11-27 21:45:20] 2025-11-28 02:44:45,375 | INFO     | errors: (none)
[2025-11-27 21:45:20] 2025-11-28 02:44:45,375 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 21:45:20] 2025-11-28 02:44:45,375 | INFO     | pilot state: finished 
[2025-11-27 21:45:20] 2025-11-28 02:44:45,375 | INFO     | transexitcode: 0
[2025-11-27 21:45:20] 2025-11-28 02:44:45,375 | INFO     | exeerrorcode: 0
[2025-11-27 21:45:20] 2025-11-28 02:44:45,375 | INFO     | exeerrordiag: 
[2025-11-27 21:45:20] 2025-11-28 02:44:45,375 | INFO     | exitcode: 0
[2025-11-27 21:45:20] 2025-11-28 02:44:45,375 | INFO     | exitmsg: OK
[2025-11-27 21:45:20] 2025-11-28 02:44:45,376 | INFO     | cpuconsumptiontime: 267139 s
[2025-11-27 21:45:20] 2025-11-28 02:44:45,376 | INFO     | nevents: 1000
[2025-11-27 21:45:20] 2025-11-28 02:44:45,376 | INFO     | neventsw: 0
[2025-11-27 21:45:20] 2025-11-28 02:44:45,376 | INFO     | pid: 3451053
[2025-11-27 21:45:20] 2025-11-28 02:44:45,376 | INFO     | pgrp: 3451053
[2025-11-27 21:45:20] 2025-11-28 02:44:45,376 | INFO     | corecount: 8
[2025-11-27 21:45:20] 2025-11-28 02:44:45,376 | INFO     | event service: False
[2025-11-27 21:45:20] 2025-11-28 02:44:45,376 | INFO     | sizes: {0: 2284094, 1: 2284293, 2: 2284293, 13: 2284321, 24: 2284377, 33: 2284667, 35: 2284851, 88115: 2349490, 88116: 2349489, 88129: 2358595, 88156: 2358785}
[2025-11-27 21:45:20] 2025-11-28 02:44:45,376 | INFO     | --------------------------------------------------
[2025-11-27 21:45:20] 2025-11-28 02:44:45,376 | INFO     | 
[2025-11-27 21:45:20] 2025-11-28 02:44:45,377 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 21:45:20] 2025-11-28 02:44:45,402 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,402 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,402 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,402 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,402 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,402 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,403 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,403 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,403 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,403 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,403 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,403 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,403 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,403 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,403 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,403 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,403 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,403 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:45:20] 2025-11-28 02:44:45,403 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,403 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:45:20] 2025-11-28 02:44:45,404 | INFO     | job 6897139676 has completed (purged errors)
[2025-11-27 21:45:20] 2025-11-28 02:44:45,404 | INFO     | overall cleanup function is called
[2025-11-27 21:45:20] 2025-11-28 02:44:46,422 | INFO     | --- collectZombieJob: --- 10, [3451053]
[2025-11-27 21:45:20] 2025-11-28 02:44:46,437 | INFO     | zombie collector waiting for pid 3451053
[2025-11-27 21:45:20] 2025-11-28 02:44:46,438 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:45:20] 2025-11-28 02:44:46,438 | INFO     | collected zombie processes
[2025-11-27 21:45:20] 2025-11-28 02:44:46,438 | INFO     | will attempt to kill all subprocesses of pid=3451053
[2025-11-27 21:45:20] 2025-11-28 02:44:48,136 | INFO     | process IDs to be killed: [3451053] (in reverse order)
[2025-11-27 21:45:20] 2025-11-28 02:44:48,714 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:45:20] 2025-11-28 02:44:48,715 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:45:20] 2025-11-28 02:44:48,750 | INFO     | did not find any defunct processes belonging to 3451053
[2025-11-27 21:45:20] 2025-11-28 02:44:48,782 | INFO     | did not find any defunct processes belonging to 3451053
[2025-11-27 21:45:20] 2025-11-28 02:44:48,783 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:45:20] 2025-11-28 02:44:48,783 | INFO     | ready for new job
[2025-11-27 21:45:20] 2025-11-28 02:44:48,783 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:45:20] 2025-11-28 02:44:48,789 | INFO     | ***************************************
[2025-11-27 21:45:20] 2025-11-28 02:44:48,790 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:45:20] 2025-11-28 02:44:48,790 | INFO     | ***************************************
[2025-11-27 21:45:20] 2025-11-28 02:44:48,790 | INFO     | 
[2025-11-27 21:45:20] 2025-11-28 02:44:48,796 | INFO     | architecture information:
[2025-11-27 21:45:20] 2025-11-28 02:44:48,796 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:45:20] 2025-11-28 02:44:48,857 | INFO     | cat /etc/os-release:
[2025-11-27 21:45:20] NAME="CentOS Linux"
[2025-11-27 21:45:20] VERSION="7 (Core)"
[2025-11-27 21:45:20] ID="centos"
[2025-11-27 21:45:20] ID_LIKE="rhel fedora"
[2025-11-27 21:45:20] VERSION_ID="7"
[2025-11-27 21:45:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:45:20] ANSI_COLOR="0;31"
[2025-11-27 21:45:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:45:20] HOME_URL="https://www.centos.org/"
[2025-11-27 21:45:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:45:20] 
[2025-11-27 21:45:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:45:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:45:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:45:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:45:20] 
[2025-11-27 21:45:20] 2025-11-28 02:44:48,857 | INFO     | ***************************************
[2025-11-27 21:45:20] 2025-11-28 02:44:49,369 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 21:45:20] 2025-11-28 02:44:49,466 | INFO     | sufficient remaining disk space (88442142720 B)
[2025-11-27 21:45:20] 2025-11-28 02:44:49,466 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:45:20] 2025-11-28 02:44:49,467 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:45:20] 2025-11-28 02:44:49,467 | INFO     | update_server=False
[2025-11-27 21:45:20] 2025-11-28 02:44:49,467 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:45:20] 2025-11-28 02:44:49,475 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:45:20] 2025-11-28 02:44:49,666 | INFO     | all data control threads have been joined
[2025-11-27 21:45:20] 2025-11-28 02:44:49,764 | INFO     | all payload control threads have been joined
[2025-11-27 21:45:20] 2025-11-28 02:44:50,209 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:45:20] 2025-11-28 02:44:50,210 | INFO     | aborting loop
[2025-11-27 21:45:20] 2025-11-28 02:44:50,432 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:45:20] 2025-11-28 02:44:50,464 | INFO     | all job control threads have been joined
[2025-11-27 21:45:20] 2025-11-28 02:44:50,472 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:45:20] 2025-11-28 02:44:50,672 | INFO     | [data] control thread has finished
[2025-11-27 21:45:20] 2025-11-28 02:44:50,772 | INFO     | [payload] control thread has finished
[2025-11-27 21:45:20] 2025-11-28 02:44:50,905 | INFO     | [job] validate thread has finished
[2025-11-27 21:45:20] 2025-11-28 02:44:51,117 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:45:20] 2025-11-28 02:44:51,215 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:45:20] 2025-11-28 02:44:51,222 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:45:20] 2025-11-28 02:44:51,450 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:45:20] 2025-11-28 02:44:51,470 | INFO     | [job] control thread has finished
[2025-11-27 21:45:20] 2025-11-28 02:44:51,484 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:45:20] 2025-11-28 02:44:51,545 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:45:20] 2025-11-28 02:44:51,546 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:45:20] 2025-11-28 02:44:51,556 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:45:20] 2025-11-28 02:44:51,557 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:45:20] 2025-11-28 02:44:51,612 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:45:20] 2025-11-28 02:44:51,802 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:45:20] 2025-11-28 02:44:55,623 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:45:20] 2025-11-28 02:45:08,283 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:45:20] 2025-11-28 02:45:08,528 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140405585270592)>', '<ExcThread(monitor, started 140404930361088)>']
[2025-11-27 21:45:20] 2025-11-28 02:45:13,556 | INFO     | all workflow threads have been joined
[2025-11-27 21:45:20] 2025-11-28 02:45:13,557 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:45:20] 2025-11-28 02:45:13,557 | INFO     | traces error code: 0
[2025-11-27 21:45:20] 2025-11-28 02:45:13,557 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:45:20] 2025-11-28 02:45:19,381 | INFO     | PID=3433937 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 21:45:20] 2025-11-28 02:45:19,381 | INFO     | .. there are 101 such processes running
[2025-11-27 21:45:20] 2025-11-28 02:45:19,382 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:45:20] 2025-11-28 02:45:19,382 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:45:20] 2025-11-28 02:45:19,382 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:45:20] 2025-11-28 02:45:19,382 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:45:20] 2025-11-28 02:45:19,382 | INFO     | [monitor] control thread has ended
[2025-11-27 21:45:20] 2025-11-28 02:45:19,586 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:45:20] 2025-11-28 02:45:19,596 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:45:20] 2025-11-28 02:45:19,609 [wrapper] pilotpid: 3433937
[2025-11-27 21:45:20] 2025-11-28 02:45:19,623 [wrapper] Pilot exit status: 0
[2025-11-27 21:45:20] 2025-11-28 02:45:19,675 [wrapper] pandaids: 6897139676
[2025-11-27 21:45:20] 2025-11-28 02:45:19,927 [wrapper] cleanup supervisor_pilot 1316499 3433938
[2025-11-27 21:45:20] 2025-11-28 02:45:19,935 [wrapper] Test setup, not cleaning
[2025-11-27 21:45:20] 2025-11-28 02:45:19,947 [wrapper] apfmon messages muted
[2025-11-27 21:45:20] 2025-11-28 02:45:19,964 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:45:20] 2025-11-28 02:45:19,978 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:45:20]  *** Error codes and diagnostics ***
[2025-11-27 21:45:20]     "exeErrorCode": 0,
[2025-11-27 21:45:20]     "exeErrorDiag": "",
[2025-11-27 21:45:20]     "pilotErrorCode": 0,
[2025-11-27 21:45:20]     "pilotErrorDiag": "",
[2025-11-27 21:45:20]  *** Listing of results directory ***
[2025-11-27 21:45:20] total 1339380
[2025-11-27 21:45:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 21:45:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 21:45:20] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-27 21:45:20] -rw-r--r--. 1 boincer umatlas       100 Nov 26 21:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:45:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 21:13 run_atlas
[2025-11-27 21:45:20] -rw-r--r--. 1 boincer umatlas       105 Nov 26 21:13 job.xml
[2025-11-27 21:45:20] -rw-r--r--. 2 boincer umatlas 411809887 Nov 26 21:13 EVNT.47483658._002194.pool.root.1
[2025-11-27 21:45:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 21:13 start_atlas.sh
[2025-11-27 21:45:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 21:13 shared
[2025-11-27 21:45:20] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 21:13 input.tar.gz
[2025-11-27 21:45:20] -rw-r--r--. 1 boincer umatlas         0 Nov 26 21:13 boinc_lockfile
[2025-11-27 21:45:20] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 21:13 pandaJob.out
[2025-11-27 21:45:20] -rw-------. 1 boincer umatlas        57 Nov 26 21:13 setup.sh.local
[2025-11-27 21:45:20] -rw-------. 1 boincer umatlas    991530 Nov 26 21:14 agis_schedconf.cvmfs.json
[2025-11-27 21:45:20] drwx------. 5 boincer umatlas      4096 Nov 26 21:14 pilot3
[2025-11-27 21:45:20] -rw-r--r--. 1 boincer umatlas       533 Nov 27 21:20 boinc_task_state.xml
[2025-11-27 21:45:20] -rw-r--r--. 1 boincer umatlas      6888 Nov 27 21:36 init_data.xml
[2025-11-27 21:45:20] -rw-------. 1 boincer umatlas 930822447 Nov 27 21:42 HITS.47556161._001774.pool.root.1
[2025-11-27 21:45:20] -rw-------. 1 boincer umatlas      1059 Nov 27 21:43 memory_monitor_summary.json
[2025-11-27 21:45:20] -rw-------. 1 boincer umatlas   1516240 Nov 27 21:44 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:45:20] -rw-------. 1 boincer umatlas   2400523 Nov 27 21:44 log.47556161._001774.job.log.tgz.1
[2025-11-27 21:45:20] -rw-------. 1 boincer umatlas      8636 Nov 27 21:44 heartbeat.json
[2025-11-27 21:45:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 21:45 boinc_mmap_file
[2025-11-27 21:45:20] -rw-------. 1 boincer umatlas        95 Nov 27 21:45 pilot_heartbeat.json
[2025-11-27 21:45:20] -rw-------. 1 boincer umatlas       824 Nov 27 21:45 pilotlog.txt
[2025-11-27 21:45:20] -rw-r--r--. 1 boincer umatlas        29 Nov 27 21:45 wrapper_checkpoint.txt
[2025-11-27 21:45:20] -rw-------. 1 boincer umatlas  10085624 Nov 27 21:45 log.47556161._001774.job.log.1
[2025-11-27 21:45:20] -rw-------. 1 boincer umatlas       353 Nov 27 21:45 output.list
[2025-11-27 21:45:20] -rw-r--r--. 1 boincer umatlas       620 Nov 27 21:45 runtime_log
[2025-11-27 21:45:20] -rw-------. 1 boincer umatlas  12503040 Nov 27 21:45 result.tar.gz
[2025-11-27 21:45:20] -rw-------. 1 boincer umatlas       661 Nov 27 21:45 VDbNDmTWBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsXJKDmYkD3cn.diag
[2025-11-27 21:45:20] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 21:45 runtime_log.err
[2025-11-27 21:45:20] -rw-r--r--. 1 boincer umatlas     21816 Nov 27 21:45 stderr.txt
[2025-11-27 21:45:20] HITS file was successfully produced:
[2025-11-27 21:45:20] -rw-------. 1 boincer umatlas 930822447 Nov 27 21:42 shared/HITS.pool.root.1
[2025-11-27 21:45:20]  *** Contents of shared directory: ***
[2025-11-27 21:45:20] total 1323984
[2025-11-27 21:45:20] -rw-r--r--. 2 boincer umatlas 411809887 Nov 26 21:13 ATLAS.root_0
[2025-11-27 21:45:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 21:13 start_atlas.sh
[2025-11-27 21:45:20] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 21:13 input.tar.gz
[2025-11-27 21:45:20] -rw-------. 1 boincer umatlas 930822447 Nov 27 21:42 HITS.pool.root.1
[2025-11-27 21:45:20] -rw-------. 1 boincer umatlas  12503040 Nov 27 21:45 result.tar.gz
21:45:21 (3424496): run_atlas exited; CPU time 271945.019648
21:45:21 (3424496): called boinc_finish(0)

</stderr_txt>
]]>

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