Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:48:54 (2028037): wrapper (7.7.26015): starting
19:48:54 (2028037): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 19:48:54] Arguments: --nthreads 8
[2025-11-26 19:48:54] Threads: 8
[2025-11-26 19:48:54] Checking for CVMFS
[2025-11-26 19:48:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:48:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:48:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:48:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:48:55] 2.13.3.0 11338 30656 251500 153341 0 585 27926095 32935937 44244 16776704 0 159511451 99.541 183709006 38228 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 19:48:55] CVMFS is ok
[2025-11-26 19:48:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:48:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:48:55] Further information can be found at the LHC@home message board.
[2025-11-26 19:48:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:48:55] Checking for apptainer binary...
[2025-11-26 19:48:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:48:55] Running /usr/bin/apptainer --version
[2025-11-26 19:48:55] apptainer version 1.4.4-1.el9
[2025-11-26 19:48:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:48:55] c7-3-17.aglt2.org
[2025-11-26 19:48:55] apptainer works
[2025-11-26 19:48:55] Set ATHENA_PROC_NUMBER=8
[2025-11-26 19:48:55] Set ATHENA_CORE_NUMBER=8
[2025-11-26 19:48:55] Starting ATLAS job with PandaID=6898377090
[2025-11-26 19:48:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:41:05]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:41:05] 2025-11-28 03:39:23,585 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:41:05] 2025-11-28 03:39:24,118 | INFO     | time since job start (96598s) is within the limit (172800.0s)
[2025-11-27 22:41:05] 2025-11-28 03:39:26,091 | INFO     | monitor loop #5587: job 0:6898377090 is in state 'finished'
[2025-11-27 22:41:05] 2025-11-28 03:39:26,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:41:05] 2025-11-28 03:39:26,125 | INFO     | time since job start (96600s) is within the limit (172800.0s)
[2025-11-27 22:41:05] 2025-11-28 03:39:26,126 | INFO     | 96603s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 22:41:05] 2025-11-28 03:39:28,132 | INFO     | time since job start (96602s) is within the limit (172800.0s)
[2025-11-27 22:41:05] 2025-11-28 03:39:28,595 | INFO     | monitor loop #5588: job 0:6898377090 is in state 'finished'
[2025-11-27 22:41:05] 2025-11-28 03:39:28,596 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:41:05] 2025-11-28 03:39:30,145 | INFO     | time since job start (96604s) is within the limit (172800.0s)
[2025-11-27 22:41:05] 2025-11-28 03:39:31,103 | INFO     | monitor loop #5589: job 0:6898377090 is in state 'finished'
[2025-11-27 22:41:05] 2025-11-28 03:39:31,104 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:41:05] 2025-11-28 03:39:32,164 | INFO     | time since job start (96606s) is within the limit (172800.0s)
[2025-11-27 22:41:05] 2025-11-28 03:39:33,607 | INFO     | monitor loop #5590: job 0:6898377090 is in state 'finished'
[2025-11-27 22:41:05] 2025-11-28 03:39:33,608 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:41:05] 2025-11-28 03:39:34,170 | INFO     | time since job start (96608s) is within the limit (172800.0s)
[2025-11-27 22:41:05] 2025-11-28 03:39:35,699 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 22:41:05] 2025-11-28 03:39:35,705 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3195.018677083332
[2025-11-27 22:41:05] 2025-11-28 03:39:35,725 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898377090/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:41:05] 2025-11-28 03:39:35,726 | INFO     | extracted standard info from prmon json
[2025-11-27 22:41:05] 2025-11-28 03:39:35,726 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:41:05] 2025-11-28 03:39:35,726 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:41:05] 2025-11-28 03:39:35,768 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:41:05] 2025-11-28 03:39:35,770 | INFO     | sum of square deviations: 1230079499671.4592
[2025-11-27 22:41:05] 2025-11-28 03:39:35,823 | INFO     | sum of deviations: 8843481556522.809
[2025-11-27 22:41:05] 2025-11-28 03:39:35,823 | INFO     | mean x: 1764252885.4864182
[2025-11-27 22:41:05] 2025-11-28 03:39:35,823 | INFO     | mean y: 2847859.1080227415
[2025-11-27 22:41:05] 2025-11-28 03:39:35,824 | INFO     | intersect: -12680997256.600714
[2025-11-27 22:41:05] 2025-11-28 03:39:35,825 | INFO     | chi2: 14.685401043701
[2025-11-27 22:41:05] 2025-11-28 03:39:35,827 | INFO     | sum of square deviations: 1218461478547.877
[2025-11-27 22:41:05] 2025-11-28 03:39:35,880 | INFO     | sum of deviations: 9362233265315.348
[2025-11-27 22:41:05] 2025-11-28 03:39:35,881 | INFO     | mean x: 1764252732.991128
[2025-11-27 22:41:05] 2025-11-28 03:39:35,881 | INFO     | mean y: 2854667.6685678074
[2025-11-27 22:41:05] 2025-11-28 03:39:35,881 | INFO     | intersect: -13553048342.837677
[2025-11-27 22:41:05] 2025-11-28 03:39:35,882 | INFO     | chi2: 11.53599333427619
[2025-11-27 22:41:05] 2025-11-28 03:39:35,882 | INFO     | current chi2=11.53599333427619 (change=21.445840668925307 %)
[2025-11-27 22:41:05] 2025-11-28 03:39:35,882 | INFO     | right removable region: 1577
[2025-11-27 22:41:05] 2025-11-28 03:39:35,884 | INFO     | sum of square deviations: 1218460043217.8777
[2025-11-27 22:41:05] 2025-11-28 03:39:35,938 | INFO     | sum of deviations: 8252784624745.787
[2025-11-27 22:41:05] 2025-11-28 03:39:35,938 | INFO     | mean x: 1764253037.991128
[2025-11-27 22:41:05] 2025-11-28 03:39:35,939 | INFO     | mean y: 2855611.5557667934
[2025-11-27 22:41:05] 2025-11-28 03:39:35,939 | INFO     | intersect: -11946654285.906414
[2025-11-27 22:41:05] 2025-11-28 03:39:35,941 | INFO     | chi2: 11.072073557808729
[2025-11-27 22:41:05] 2025-11-28 03:39:35,942 | INFO     | current chi2=11.072073557808729 (change=24.60489485537158 %)
[2025-11-27 22:41:05] 2025-11-28 03:39:35,942 | INFO     | left removable region: 10
[2025-11-27 22:41:05] 2025-11-28 03:39:35,945 | INFO     | sum of square deviations: 1193156990439.7456
[2025-11-27 22:41:05] 2025-11-28 03:39:36,010 | INFO     | sum of deviations: 8359671661796.569
[2025-11-27 22:41:05] 2025-11-28 03:39:36,011 | INFO     | mean x: 1764253007.5015955
[2025-11-27 22:41:05] 2025-11-28 03:39:36,011 | INFO     | mean y: 2871202.5768985325
[2025-11-27 22:41:05] 2025-11-28 03:39:36,011 | INFO     | intersect: -12358097210.820887
[2025-11-27 22:41:05] 2025-11-28 03:39:36,012 | INFO     | chi2: 4.232956850510367
[2025-11-27 22:41:05] 2025-11-28 03:39:36,012 | INFO     | current memory leak: 7.01 B/s (using 1567 data points, chi2=4.23)
[2025-11-27 22:41:05] 2025-11-28 03:39:36,014 | INFO     | could have reported an average CPU frequency of 3106 MHz (56 samples)
[2025-11-27 22:41:05] 2025-11-28 03:39:36,014 | INFO     | ..............................
[2025-11-27 22:41:05] 2025-11-28 03:39:36,014 | INFO     | . Timing measurements:
[2025-11-27 22:41:05] 2025-11-28 03:39:36,014 | INFO     | . get job = 0 s
[2025-11-27 22:41:05] 2025-11-28 03:39:36,014 | INFO     | . initial setup = 3 s
[2025-11-27 22:41:05] 2025-11-28 03:39:36,014 | INFO     | . payload setup = 18 s
[2025-11-27 22:41:05] 2025-11-28 03:39:36,015 | INFO     | . stage-in = 0 s
[2025-11-27 22:41:05] 2025-11-28 03:39:36,015 | INFO     | . payload execution = 96526 s
[2025-11-27 22:41:05] 2025-11-28 03:39:36,015 | INFO     | . stage-out = 5 s
[2025-11-27 22:41:05] 2025-11-28 03:39:36,015 | INFO     | . log creation = 0 s
[2025-11-27 22:41:05] 2025-11-28 03:39:36,015 | INFO     | ..............................
[2025-11-27 22:41:05] 2025-11-28 03:39:36,194 | INFO     | time since job start (96610s) is within the limit (172800.0s)
[2025-11-27 22:41:05] 2025-11-28 03:39:36,670 | INFO     | 
[2025-11-27 22:41:05] 2025-11-28 03:39:36,672 | INFO     | job summary report
[2025-11-27 22:41:05] 2025-11-28 03:39:36,672 | INFO     | --------------------------------------------------
[2025-11-27 22:41:05] 2025-11-28 03:39:36,672 | INFO     | PanDA job id: 6898377090
[2025-11-27 22:41:05] 2025-11-28 03:39:36,672 | INFO     | task id: 47556161
[2025-11-27 22:41:05] 2025-11-28 03:39:36,672 | INFO     | errors: (none)
[2025-11-27 22:41:05] 2025-11-28 03:39:36,672 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:41:05] 2025-11-28 03:39:36,672 | INFO     | pilot state: finished 
[2025-11-27 22:41:05] 2025-11-28 03:39:36,672 | INFO     | transexitcode: 0
[2025-11-27 22:41:05] 2025-11-28 03:39:36,672 | INFO     | exeerrorcode: 0
[2025-11-27 22:41:05] 2025-11-28 03:39:36,672 | INFO     | exeerrordiag: 
[2025-11-27 22:41:05] 2025-11-28 03:39:36,672 | INFO     | exitcode: 0
[2025-11-27 22:41:05] 2025-11-28 03:39:36,673 | INFO     | exitmsg: OK
[2025-11-27 22:41:05] 2025-11-28 03:39:36,673 | INFO     | cpuconsumptiontime: 207390 s
[2025-11-27 22:41:05] 2025-11-28 03:39:36,673 | INFO     | nevents: 1000
[2025-11-27 22:41:05] 2025-11-28 03:39:36,673 | INFO     | neventsw: 0
[2025-11-27 22:41:05] 2025-11-28 03:39:36,673 | INFO     | pid: 2053996
[2025-11-27 22:41:05] 2025-11-28 03:39:36,673 | INFO     | pgrp: 2053996
[2025-11-27 22:41:05] 2025-11-28 03:39:36,673 | INFO     | corecount: 8
[2025-11-27 22:41:05] 2025-11-28 03:39:36,673 | INFO     | event service: False
[2025-11-27 22:41:05] 2025-11-28 03:39:36,673 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284633, 23: 2284633, 96548: 2354128, 96555: 2363122, 96556: 2363306, 96573: 2363552}
[2025-11-27 22:41:05] 2025-11-28 03:39:36,673 | INFO     | --------------------------------------------------
[2025-11-27 22:41:05] 2025-11-28 03:39:36,673 | INFO     | 
[2025-11-27 22:41:05] 2025-11-28 03:39:36,673 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 22:41:05] 2025-11-28 03:39:36,771 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,771 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,772 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,772 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,772 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,772 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,772 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,772 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,772 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,772 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,772 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,773 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,773 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,773 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,773 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,773 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,773 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,773 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:41:05] 2025-11-28 03:39:36,773 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,776 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:41:05] 2025-11-28 03:39:36,776 | INFO     | job 6898377090 has completed (purged errors)
[2025-11-27 22:41:05] 2025-11-28 03:39:36,777 | INFO     | overall cleanup function is called
[2025-11-27 22:41:05] 2025-11-28 03:39:37,804 | INFO     | --- collectZombieJob: --- 10, [2053996]
[2025-11-27 22:41:05] 2025-11-28 03:39:37,805 | INFO     | zombie collector waiting for pid 2053996
[2025-11-27 22:41:05] 2025-11-28 03:39:37,805 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:41:05] 2025-11-28 03:39:37,805 | INFO     | collected zombie processes
[2025-11-27 22:41:05] 2025-11-28 03:39:37,805 | INFO     | will attempt to kill all subprocesses of pid=2053996
[2025-11-27 22:41:05] 2025-11-28 03:39:39,442 | INFO     | process IDs to be killed: [2053996] (in reverse order)
[2025-11-27 22:41:05] 2025-11-28 03:39:39,709 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:41:05] 2025-11-28 03:39:39,709 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:41:05] 2025-11-28 03:39:39,744 | INFO     | did not find any defunct processes belonging to 2053996
[2025-11-27 22:41:05] 2025-11-28 03:39:39,776 | INFO     | did not find any defunct processes belonging to 2053996
[2025-11-27 22:41:05] 2025-11-28 03:39:39,777 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:41:05] 2025-11-28 03:39:39,777 | INFO     | ready for new job
[2025-11-27 22:41:05] 2025-11-28 03:39:39,777 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:41:05] 2025-11-28 03:39:39,784 | INFO     | ***************************************
[2025-11-27 22:41:05] 2025-11-28 03:39:39,785 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:41:05] 2025-11-28 03:39:39,785 | INFO     | ***************************************
[2025-11-27 22:41:05] 2025-11-28 03:39:39,785 | INFO     | 
[2025-11-27 22:41:05] 2025-11-28 03:39:39,791 | INFO     | architecture information:
[2025-11-27 22:41:05] 2025-11-28 03:39:39,792 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:41:05] 2025-11-28 03:39:39,879 | INFO     | cat /etc/os-release:
[2025-11-27 22:41:05] NAME="CentOS Linux"
[2025-11-27 22:41:05] VERSION="7 (Core)"
[2025-11-27 22:41:05] ID="centos"
[2025-11-27 22:41:05] ID_LIKE="rhel fedora"
[2025-11-27 22:41:05] VERSION_ID="7"
[2025-11-27 22:41:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:41:05] ANSI_COLOR="0;31"
[2025-11-27 22:41:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:41:05] HOME_URL="https://www.centos.org/"
[2025-11-27 22:41:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:41:05] 
[2025-11-27 22:41:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:41:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:41:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:41:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:41:05] 
[2025-11-27 22:41:05] 2025-11-28 03:39:39,881 | INFO     | ***************************************
[2025-11-27 22:41:05] 2025-11-28 03:39:40,386 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 22:41:05] 2025-11-28 03:39:40,430 | INFO     | sufficient remaining disk space (66199748608 B)
[2025-11-27 22:41:05] 2025-11-28 03:39:40,430 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:41:05] 2025-11-28 03:39:40,430 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:41:05] 2025-11-28 03:39:40,430 | INFO     | update_server=False
[2025-11-27 22:41:05] 2025-11-28 03:39:40,430 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:41:05] 2025-11-28 03:39:40,431 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:41:05] 2025-11-28 03:39:40,431 | INFO     | aborting loop
[2025-11-27 22:41:05] 2025-11-28 03:39:41,125 | INFO     | all data control threads have been joined
[2025-11-27 22:41:05] 2025-11-28 03:39:41,217 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:41:05] 2025-11-28 03:39:41,226 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:41:05] 2025-11-28 03:39:41,324 | INFO     | all job control threads have been joined
[2025-11-27 22:41:05] 2025-11-28 03:39:41,437 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:41:05] 2025-11-28 03:39:41,444 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:41:05] 2025-11-28 03:39:41,473 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:41:05] 2025-11-28 03:39:41,599 | INFO     | [job] validate thread has finished
[2025-11-27 22:41:05] 2025-11-28 03:39:41,856 | INFO     | all payload control threads have been joined
[2025-11-27 22:41:05] 2025-11-28 03:39:42,133 | INFO     | [data] control thread has finished
[2025-11-27 22:41:05] 2025-11-28 03:39:42,232 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:41:05] 2025-11-28 03:39:42,330 | INFO     | [job] control thread has finished
[2025-11-27 22:41:05] 2025-11-28 03:39:42,555 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:41:05] 2025-11-28 03:39:42,629 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:41:05] 2025-11-28 03:39:42,861 | INFO     | [payload] control thread has finished
[2025-11-27 22:41:05] 2025-11-28 03:39:42,871 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:41:05] 2025-11-28 03:39:42,925 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:41:05] 2025-11-28 03:39:42,963 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:41:05] 2025-11-28 03:39:43,010 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:41:05] 2025-11-28 03:39:43,224 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:41:05] 2025-11-28 03:39:43,652 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:41:05] 2025-11-28 03:39:47,661 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:41:05] 2025-11-28 03:40:11,855 | INFO     | PID=2036965 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:41:05] 2025-11-28 03:40:11,855 | INFO     | .. there are 68 such processes running
[2025-11-27 22:41:05] 2025-11-28 03:40:11,864 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:41:05] 2025-11-28 03:40:11,864 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:41:05] 2025-11-28 03:40:11,864 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:41:05] 2025-11-28 03:40:16,349 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:41:05] 2025-11-28 03:40:18,390 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140437689734976)>', '<ExcThread(monitor, started 140436832249600)>']
[2025-11-27 22:41:05] 2025-11-28 03:40:18,927 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:41:05] 2025-11-28 03:40:18,928 | INFO     | [monitor] control thread has ended
[2025-11-27 22:41:05] 2025-11-28 03:40:23,414 | INFO     | all workflow threads have been joined
[2025-11-27 22:41:05] 2025-11-28 03:40:23,421 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:41:05] 2025-11-28 03:40:23,422 | INFO     | traces error code: 0
[2025-11-27 22:41:05] 2025-11-28 03:40:23,422 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:41:05] 2025-11-28 03:40:23,723 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:41:05] 2025-11-28 03:40:23,734 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:41:05] 2025-11-28 03:40:23,751 [wrapper] pilotpid: 2036965
[2025-11-27 22:41:05] 2025-11-28 03:40:23,756 [wrapper] Pilot exit status: 0
[2025-11-27 22:41:05] 2025-11-28 03:40:23,926 [wrapper] pandaids: 6898377090
[2025-11-27 22:41:05] 2025-11-28 03:40:24,084 [wrapper] cleanup supervisor_pilot 3129875 2036966
[2025-11-27 22:41:05] 2025-11-28 03:40:24,106 [wrapper] Test setup, not cleaning
[2025-11-27 22:41:05] 2025-11-28 03:40:24,109 [wrapper] apfmon messages muted
[2025-11-27 22:41:05] 2025-11-28 03:40:24,112 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:41:05] 2025-11-28 03:40:24,114 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:41:05]  *** Error codes and diagnostics ***
[2025-11-27 22:41:05]     "exeErrorCode": 0,
[2025-11-27 22:41:05]     "exeErrorDiag": "",
[2025-11-27 22:41:05]     "pilotErrorCode": 0,
[2025-11-27 22:41:05]     "pilotErrorDiag": "",
[2025-11-27 22:41:05]  *** Listing of results directory ***
[2025-11-27 22:41:05] total 1331856
[2025-11-27 22:41:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 22:41:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:14 queuedata.json
[2025-11-27 22:41:05] -rwx------. 1 boincer umatlas     36292 Nov 26 11:15 runpilot2-wrapper.sh
[2025-11-27 22:41:05] -rw-r--r--. 1 boincer umatlas       100 Nov 26 19:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:41:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 19:48 run_atlas
[2025-11-27 22:41:05] -rw-r--r--. 1 boincer umatlas       105 Nov 26 19:48 job.xml
[2025-11-27 22:41:05] -rw-r--r--. 2 boincer umatlas 411152397 Nov 26 19:48 EVNT.47483658._002569.pool.root.1
[2025-11-27 22:41:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:48 start_atlas.sh
[2025-11-27 22:41:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 19:48 shared
[2025-11-27 22:41:05] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 19:48 input.tar.gz
[2025-11-27 22:41:05] -rw-r--r--. 1 boincer umatlas         0 Nov 26 19:48 boinc_lockfile
[2025-11-27 22:41:05] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 19:48 pandaJob.out
[2025-11-27 22:41:05] -rw-------. 1 boincer umatlas        57 Nov 26 19:48 setup.sh.local
[2025-11-27 22:41:05] -rw-------. 1 boincer umatlas    991546 Nov 26 19:49 agis_schedconf.cvmfs.json
[2025-11-27 22:41:05] drwx------. 5 boincer umatlas      4096 Nov 26 19:49 pilot3
[2025-11-27 22:41:05] -rw-r--r--. 1 boincer umatlas       533 Nov 27 22:23 boinc_task_state.xml
[2025-11-27 22:41:05] -rw-------. 1 boincer umatlas 919741611 Nov 27 22:38 HITS.47556161._005512.pool.root.1
[2025-11-27 22:41:05] -rw-------. 1 boincer umatlas      1062 Nov 27 22:39 memory_monitor_summary.json
[2025-11-27 22:41:05] -rw-------. 1 boincer umatlas   1516240 Nov 27 22:39 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:41:05] -rw-------. 1 boincer umatlas   2554656 Nov 27 22:39 log.47556161._005512.job.log.tgz.1
[2025-11-27 22:41:05] -rw-------. 1 boincer umatlas      8594 Nov 27 22:39 heartbeat.json
[2025-11-27 22:41:05] -rw-------. 1 boincer umatlas        95 Nov 27 22:40 pilot_heartbeat.json
[2025-11-27 22:41:05] -rw-------. 1 boincer umatlas      4824 Nov 27 22:40 pilotlog.txt
[2025-11-27 22:41:05] -rw-------. 1 boincer umatlas  11947286 Nov 27 22:40 log.47556161._005512.job.log.1
[2025-11-27 22:41:05] -rw-------. 1 boincer umatlas       353 Nov 27 22:40 output.list
[2025-11-27 22:41:05] -rw-r--r--. 1 boincer umatlas       620 Nov 27 22:40 runtime_log
[2025-11-27 22:41:05] -rw-------. 1 boincer umatlas  14520320 Nov 27 22:40 result.tar.gz
[2025-11-27 22:41:05] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 22:40 runtime_log.err
[2025-11-27 22:41:05] -rw-------. 1 boincer umatlas       664 Nov 27 22:40 hW0KDmzLXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQ8MKDmABw25n.diag
[2025-11-27 22:41:05] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 22:40 init_data.xml
[2025-11-27 22:41:05] -rw-r--r--. 1 boincer umatlas        29 Nov 27 22:41 wrapper_checkpoint.txt
[2025-11-27 22:41:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 22:41 boinc_mmap_file
[2025-11-27 22:41:05] -rw-r--r--. 1 boincer umatlas     21794 Nov 27 22:41 stderr.txt
[2025-11-27 22:41:05] HITS file was successfully produced:
[2025-11-27 22:41:05] -rw-------. 1 boincer umatlas 919741611 Nov 27 22:38 shared/HITS.pool.root.1
[2025-11-27 22:41:05]  *** Contents of shared directory: ***
[2025-11-27 22:41:05] total 1314492
[2025-11-27 22:41:05] -rw-r--r--. 2 boincer umatlas 411152397 Nov 26 19:48 ATLAS.root_0
[2025-11-27 22:41:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:48 start_atlas.sh
[2025-11-27 22:41:05] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 19:48 input.tar.gz
[2025-11-27 22:41:05] -rw-------. 1 boincer umatlas 919741611 Nov 27 22:38 HITS.pool.root.1
[2025-11-27 22:41:05] -rw-------. 1 boincer umatlas  14520320 Nov 27 22:40 result.tar.gz
22:41:06 (2028037): run_atlas exited; CPU time 210394.299913
22:41:06 (2028037): called boinc_finish(0)

</stderr_txt>
]]>

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