Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:14:15 (308640): wrapper (7.7.26015): starting
19:14:15 (308640): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 19:14:15] Arguments: --nthreads 8
[2025-11-26 19:14:15] Threads: 8
[2025-11-26 19:14:15] Checking for CVMFS
[2025-11-26 19:14:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:14:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:14:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:14:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:14:17] 2.13.3.0 7030 6075 260804 153340 0 711 18541716 32935936 66006 16776704 0 57179108 99.765 37984934 30857 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 19:14:17] CVMFS is ok
[2025-11-26 19:14:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:14:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:14:17] Further information can be found at the LHC@home message board.
[2025-11-26 19:14:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:14:17] Checking for apptainer binary...
[2025-11-26 19:14:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:14:17] Running /usr/bin/apptainer --version
[2025-11-26 19:14:17] apptainer version 1.4.4-1.el9
[2025-11-26 19:14:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:14:17] lc-10-10.aglt2.org
[2025-11-26 19:14:17] apptainer works
[2025-11-26 19:14:18] Set ATHENA_PROC_NUMBER=8
[2025-11-26 19:14:18] Set ATHENA_CORE_NUMBER=8
[2025-11-26 19:14:18] Starting ATLAS job with PandaID=6898377088
[2025-11-26 19:14:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:03:42]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:03:42] 2025-11-27 20:02:27,905 | INFO     | monitor loop #3551: job 0:6898377088 is in state 'finished'
[2025-11-27 15:03:42] 2025-11-27 20:02:27,905 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:03:42] 2025-11-27 20:02:28,798 | INFO     | PID=318756 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 15:03:42] 2025-11-27 20:02:28,799 | INFO     | .. there are 102 such processes running
[2025-11-27 15:03:42] 2025-11-27 20:02:29,809 | INFO     | time since job start (71227s) is within the limit (172800.0s)
[2025-11-27 15:03:42] 2025-11-27 20:02:30,425 | INFO     | monitor loop #3552: job 0:6898377088 is in state 'finished'
[2025-11-27 15:03:42] 2025-11-27 20:02:30,426 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:03:42] 2025-11-27 20:02:31,870 | INFO     | time since job start (71229s) is within the limit (172800.0s)
[2025-11-27 15:03:42] 2025-11-27 20:02:32,934 | INFO     | monitor loop #3553: job 0:6898377088 is in state 'finished'
[2025-11-27 15:03:42] 2025-11-27 20:02:32,934 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:03:42] 2025-11-27 20:02:33,877 | INFO     | time since job start (71231s) is within the limit (172800.0s)
[2025-11-27 15:03:42] 2025-11-27 20:02:35,466 | INFO     | monitor loop #3554: job 0:6898377088 is in state 'finished'
[2025-11-27 15:03:42] 2025-11-27 20:02:35,467 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:03:42] 2025-11-27 20:02:35,884 | INFO     | time since job start (71233s) is within the limit (172800.0s)
[2025-11-27 15:03:42] 2025-11-27 20:02:37,901 | INFO     | time since job start (71235s) is within the limit (172800.0s)
[2025-11-27 15:03:42] 2025-11-27 20:02:37,908 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 15:03:42] 2025-11-27 20:02:37,918 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2713.9238854166665
[2025-11-27 15:03:42] 2025-11-27 20:02:37,955 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898377088/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 15:03:42] 2025-11-27 20:02:37,960 | INFO     | extracted standard info from prmon json
[2025-11-27 15:03:42] 2025-11-27 20:02:37,960 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 15:03:42] 2025-11-27 20:02:37,960 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 15:03:42] 2025-11-27 20:02:37,980 | INFO     | fitting pss+swap vs Time
[2025-11-27 15:03:42] 2025-11-27 20:02:37,982 | INFO     | sum of square deviations: 490346579852.2109
[2025-11-27 15:03:42] 2025-11-27 20:02:38,029 | INFO     | monitor loop #3555: job 0:6898377088 is in state 'finished'
[2025-11-27 15:03:42] 2025-11-27 20:02:38,030 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:03:42] 2025-11-27 20:02:38,035 | INFO     | sum of deviations: 1511582699550.499
[2025-11-27 15:03:42] 2025-11-27 20:02:38,035 | INFO     | mean x: 1764238156.048927
[2025-11-27 15:03:42] 2025-11-27 20:02:38,035 | INFO     | mean y: 2913772.6403433476
[2025-11-27 15:03:42] 2025-11-27 20:02:38,035 | INFO     | intersect: -5435671881.152114
[2025-11-27 15:03:42] 2025-11-27 20:02:38,037 | INFO     | chi2: 22.86502214606157
[2025-11-27 15:03:42] 2025-11-27 20:02:38,043 | INFO     | sum of square deviations: 484061642710.01416
[2025-11-27 15:03:42] 2025-11-27 20:02:38,151 | INFO     | sum of deviations: 1905408518416.7048
[2025-11-27 15:03:42] 2025-11-27 20:02:38,152 | INFO     | mean x: 1764238003.5586207
[2025-11-27 15:03:42] 2025-11-27 20:02:38,152 | INFO     | mean y: 2923326.2396551725
[2025-11-27 15:03:42] 2025-11-27 20:02:38,152 | INFO     | intersect: -6941634605.835331
[2025-11-27 15:03:42] 2025-11-27 20:02:38,159 | INFO     | chi2: 19.497735862374984
[2025-11-27 15:03:42] 2025-11-27 20:02:38,159 | INFO     | current chi2=19.497735862374984 (change=14.726800884671743 %)
[2025-11-27 15:03:42] 2025-11-27 20:02:38,159 | INFO     | right removable region: 1159
[2025-11-27 15:03:42] 2025-11-27 20:02:38,160 | INFO     | sum of square deviations: 484059759985.53046
[2025-11-27 15:03:42] 2025-11-27 20:02:38,231 | INFO     | sum of deviations: 1075800993549.8503
[2025-11-27 15:03:42] 2025-11-27 20:02:38,231 | INFO     | mean x: 1764238308.562069
[2025-11-27 15:03:42] 2025-11-27 20:02:38,232 | INFO     | mean y: 2924341.078448276
[2025-11-27 15:03:42] 2025-11-27 20:02:38,232 | INFO     | intersect: -3918015761.9917088
[2025-11-27 15:03:42] 2025-11-27 20:02:38,233 | INFO     | chi2: 19.440843220004282
[2025-11-27 15:03:42] 2025-11-27 20:02:38,233 | INFO     | current chi2=19.440843220004282 (change=14.975620422248712 %)
[2025-11-27 15:03:42] 2025-11-27 20:02:38,233 | INFO     | left removable region: 10
[2025-11-27 15:03:42] 2025-11-27 20:02:38,239 | INFO     | sum of square deviations: 470420737089.29425
[2025-11-27 15:03:42] 2025-11-27 20:02:38,408 | INFO     | sum of deviations: 1264151596923.2842
[2025-11-27 15:03:42] 2025-11-27 20:02:38,408 | INFO     | mean x: 1764238278.0870323
[2025-11-27 15:03:42] 2025-11-27 20:02:38,408 | INFO     | mean y: 2942764.6971279373
[2025-11-27 15:03:42] 2025-11-27 20:02:38,408 | INFO     | intersect: -4738057069.614094
[2025-11-27 15:03:42] 2025-11-27 20:02:38,426 | INFO     | chi2: 13.900516400463193
[2025-11-27 15:03:42] 2025-11-27 20:02:38,426 | INFO     | current memory leak: 2.69 B/s (using 1149 data points, chi2=13.90)
[2025-11-27 15:03:42] 2025-11-27 20:02:38,428 | INFO     | could have reported an average CPU frequency of 2753 MHz (42 samples)
[2025-11-27 15:03:42] 2025-11-27 20:02:38,428 | INFO     | ..............................
[2025-11-27 15:03:42] 2025-11-27 20:02:38,428 | INFO     | . Timing measurements:
[2025-11-27 15:03:42] 2025-11-27 20:02:38,428 | INFO     | . get job = 0 s
[2025-11-27 15:03:42] 2025-11-27 20:02:38,428 | INFO     | . initial setup = 6 s
[2025-11-27 15:03:42] 2025-11-27 20:02:38,428 | INFO     | . payload setup = 35 s
[2025-11-27 15:03:42] 2025-11-27 20:02:38,428 | INFO     | . stage-in = 0 s
[2025-11-27 15:03:42] 2025-11-27 20:02:38,428 | INFO     | . payload execution = 71077 s
[2025-11-27 15:03:42] 2025-11-27 20:02:38,428 | INFO     | . stage-out = 13 s
[2025-11-27 15:03:42] 2025-11-27 20:02:38,428 | INFO     | . log creation = 4 s
[2025-11-27 15:03:42] 2025-11-27 20:02:38,428 | INFO     | ..............................
[2025-11-27 15:03:42] 2025-11-27 20:02:38,978 | INFO     | 
[2025-11-27 15:03:42] 2025-11-27 20:02:38,979 | INFO     | job summary report
[2025-11-27 15:03:42] 2025-11-27 20:02:38,979 | INFO     | --------------------------------------------------
[2025-11-27 15:03:42] 2025-11-27 20:02:38,979 | INFO     | PanDA job id: 6898377088
[2025-11-27 15:03:42] 2025-11-27 20:02:38,979 | INFO     | task id: 47556161
[2025-11-27 15:03:42] 2025-11-27 20:02:38,979 | INFO     | errors: (none)
[2025-11-27 15:03:42] 2025-11-27 20:02:38,979 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:03:42] 2025-11-27 20:02:38,979 | INFO     | pilot state: finished 
[2025-11-27 15:03:42] 2025-11-27 20:02:38,979 | INFO     | transexitcode: 0
[2025-11-27 15:03:42] 2025-11-27 20:02:38,979 | INFO     | exeerrorcode: 0
[2025-11-27 15:03:42] 2025-11-27 20:02:38,979 | INFO     | exeerrordiag: 
[2025-11-27 15:03:42] 2025-11-27 20:02:38,980 | INFO     | exitcode: 0
[2025-11-27 15:03:42] 2025-11-27 20:02:38,980 | INFO     | exitmsg: OK
[2025-11-27 15:03:42] 2025-11-27 20:02:38,980 | INFO     | cpuconsumptiontime: 249020 s
[2025-11-27 15:03:42] 2025-11-27 20:02:38,980 | INFO     | nevents: 1000
[2025-11-27 15:03:42] 2025-11-27 20:02:38,980 | INFO     | neventsw: 0
[2025-11-27 15:03:42] 2025-11-27 20:02:38,980 | INFO     | pid: 328736
[2025-11-27 15:03:42] 2025-11-27 20:02:38,980 | INFO     | pgrp: 328736
[2025-11-27 15:03:42] 2025-11-27 20:02:38,980 | INFO     | corecount: 8
[2025-11-27 15:03:42] 2025-11-27 20:02:39,012 | INFO     | event service: False
[2025-11-27 15:03:42] 2025-11-27 20:02:39,013 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284371, 13: 2284371, 24: 2284427, 28: 2284717, 34: 2284873, 71118: 2341383, 71119: 2341382, 71134: 2350432, 71137: 2350488, 711
[2025-11-27 15:03:42] 2025-11-27 20:02:39,013 | INFO     | --------------------------------------------------
[2025-11-27 15:03:42] 2025-11-27 20:02:39,013 | INFO     | 
[2025-11-27 15:03:42] 2025-11-27 20:02:39,013 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 15:03:42] 2025-11-27 20:02:39,263 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,267 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,267 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,267 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,267 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,268 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,268 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,268 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,268 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,268 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,268 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,268 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,268 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,268 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,268 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,268 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,268 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,269 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:03:42] 2025-11-27 20:02:39,269 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,269 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:03:42] 2025-11-27 20:02:39,269 | INFO     | job 6898377088 has completed (purged errors)
[2025-11-27 15:03:42] 2025-11-27 20:02:39,269 | INFO     | overall cleanup function is called
[2025-11-27 15:03:42] 2025-11-27 20:02:40,299 | INFO     | --- collectZombieJob: --- 10, [328736]
[2025-11-27 15:03:42] 2025-11-27 20:02:40,299 | INFO     | zombie collector waiting for pid 328736
[2025-11-27 15:03:42] 2025-11-27 20:02:40,299 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:03:42] 2025-11-27 20:02:40,300 | INFO     | collected zombie processes
[2025-11-27 15:03:42] 2025-11-27 20:02:40,300 | INFO     | will attempt to kill all subprocesses of pid=328736
[2025-11-27 15:03:42] 2025-11-27 20:02:42,810 | INFO     | process IDs to be killed: [328736] (in reverse order)
[2025-11-27 15:03:42] 2025-11-27 20:02:43,739 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:03:42] 2025-11-27 20:02:43,740 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:03:42] 2025-11-27 20:02:44,103 | INFO     | did not find any defunct processes belonging to 328736
[2025-11-27 15:03:42] 2025-11-27 20:02:44,310 | INFO     | did not find any defunct processes belonging to 328736
[2025-11-27 15:03:42] 2025-11-27 20:02:44,336 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:03:42] 2025-11-27 20:02:44,336 | INFO     | ready for new job
[2025-11-27 15:03:42] 2025-11-27 20:02:44,336 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:03:42] 2025-11-27 20:02:44,359 | INFO     | ***************************************
[2025-11-27 15:03:42] 2025-11-27 20:02:44,359 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:03:42] 2025-11-27 20:02:44,360 | INFO     | ***************************************
[2025-11-27 15:03:42] 2025-11-27 20:02:44,360 | INFO     | 
[2025-11-27 15:03:42] 2025-11-27 20:02:44,396 | INFO     | architecture information:
[2025-11-27 15:03:42] 2025-11-27 20:02:44,443 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:03:42] 2025-11-27 20:02:44,606 | INFO     | cat /etc/os-release:
[2025-11-27 15:03:42] NAME="CentOS Linux"
[2025-11-27 15:03:42] VERSION="7 (Core)"
[2025-11-27 15:03:42] ID="centos"
[2025-11-27 15:03:42] ID_LIKE="rhel fedora"
[2025-11-27 15:03:42] VERSION_ID="7"
[2025-11-27 15:03:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:03:42] ANSI_COLOR="0;31"
[2025-11-27 15:03:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:03:42] HOME_URL="https://www.centos.org/"
[2025-11-27 15:03:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:03:42] 
[2025-11-27 15:03:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:03:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:03:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:03:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:03:42] 
[2025-11-27 15:03:42] 2025-11-27 20:02:44,606 | INFO     | ***************************************
[2025-11-27 15:03:42] 2025-11-27 20:02:45,125 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 15:03:42] 2025-11-27 20:02:45,316 | INFO     | sufficient remaining disk space (81147199488 B)
[2025-11-27 15:03:42] 2025-11-27 20:02:45,316 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:03:42] 2025-11-27 20:02:45,316 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:03:42] 2025-11-27 20:02:45,316 | INFO     | update_server=False
[2025-11-27 15:03:42] 2025-11-27 20:02:45,316 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:03:42] 2025-11-27 20:02:45,319 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:03:42] 2025-11-27 20:02:45,320 | INFO     | aborting loop
[2025-11-27 15:03:42] 2025-11-27 20:02:45,320 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:03:42] 2025-11-27 20:02:45,561 | INFO     | all payload control threads have been joined
[2025-11-27 15:03:42] 2025-11-27 20:02:45,920 | INFO     | all data control threads have been joined
[2025-11-27 15:03:42] 2025-11-27 20:02:46,322 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:03:42] 2025-11-27 20:02:46,324 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:03:42] 2025-11-27 20:02:46,429 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:03:42] 2025-11-27 20:02:46,431 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:03:42] 2025-11-27 20:02:46,443 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:03:42] 2025-11-27 20:02:46,444 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:03:42] 2025-11-27 20:02:46,567 | INFO     | [payload] control thread has finished
[2025-11-27 15:03:42] 2025-11-27 20:02:46,737 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:03:42] 2025-11-27 20:02:46,844 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:03:42] 2025-11-27 20:02:46,845 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:03:42] 2025-11-27 20:02:46,883 | INFO     | all job control threads have been joined
[2025-11-27 15:03:42] 2025-11-27 20:02:46,926 | INFO     | [data] control thread has finished
[2025-11-27 15:03:42] 2025-11-27 20:02:47,107 | INFO     | [job] validate thread has finished
[2025-11-27 15:03:42] 2025-11-27 20:02:47,640 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:03:42] 2025-11-27 20:02:47,889 | INFO     | [job] control thread has finished
[2025-11-27 15:03:42] 2025-11-27 20:02:48,111 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:03:42] 2025-11-27 20:02:48,438 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:03:42] 2025-11-27 20:02:49,117 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:03:42] 2025-11-27 20:02:49,342 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:03:42] 2025-11-27 20:03:13,730 | INFO     | PID=318756 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 15:03:42] 2025-11-27 20:03:13,730 | INFO     | .. there are 102 such processes running
[2025-11-27 15:03:42] 2025-11-27 20:03:13,731 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:03:42] 2025-11-27 20:03:13,731 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:03:42] 2025-11-27 20:03:13,731 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:03:42] 2025-11-27 20:03:34,277 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:03:42] 2025-11-27 20:03:34,887 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140531144107840)>', '<ExcThread(monitor, started 140530507831040)>']
[2025-11-27 15:03:42] 2025-11-27 20:03:34,978 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:03:42] 2025-11-27 20:03:34,978 | INFO     | [monitor] control thread has ended
[2025-11-27 15:03:42] 2025-11-27 20:03:39,913 | INFO     | all workflow threads have been joined
[2025-11-27 15:03:42] 2025-11-27 20:03:39,913 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:03:42] 2025-11-27 20:03:39,914 | INFO     | traces error code: 0
[2025-11-27 15:03:42] 2025-11-27 20:03:39,914 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:03:42] 2025-11-27 20:03:40,712 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:03:42] 2025-11-27 20:03:40,735 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:03:42] 2025-11-27 20:03:40,751 [wrapper] pilotpid: 318756
[2025-11-27 15:03:42] 2025-11-27 20:03:40,793 [wrapper] Pilot exit status: 0
[2025-11-27 15:03:42] 2025-11-27 20:03:40,901 [wrapper] pandaids: 6898377088
[2025-11-27 15:03:42] 2025-11-27 20:03:41,853 [wrapper] cleanup supervisor_pilot 3779144 318757
[2025-11-27 15:03:42] 2025-11-27 20:03:41,865 [wrapper] Test setup, not cleaning
[2025-11-27 15:03:42] 2025-11-27 20:03:41,878 [wrapper] apfmon messages muted
[2025-11-27 15:03:42] 2025-11-27 20:03:41,928 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:03:42] 2025-11-27 20:03:41,944 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:03:42]  *** Error codes and diagnostics ***
[2025-11-27 15:03:42]     "exeErrorCode": 0,
[2025-11-27 15:03:42]     "exeErrorDiag": "",
[2025-11-27 15:03:42]     "pilotErrorCode": 0,
[2025-11-27 15:03:42]     "pilotErrorDiag": "",
[2025-11-27 15:03:42]  *** Listing of results directory ***
[2025-11-27 15:03:42] total 1308268
[2025-11-27 15:03:42] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 15:03:42] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:14 queuedata.json
[2025-11-27 15:03:42] -rwx------. 1 boincer umatlas     36292 Nov 26 11:15 runpilot2-wrapper.sh
[2025-11-27 15:03:42] -rw-r--r--. 1 boincer umatlas       100 Nov 26 19:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:03:42] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 19:14 run_atlas
[2025-11-27 15:03:42] -rw-r--r--. 1 boincer umatlas       105 Nov 26 19:14 job.xml
[2025-11-27 15:03:42] -rw-r--r--. 2 boincer umatlas 409967235 Nov 26 19:14 EVNT.47483658._002568.pool.root.1
[2025-11-27 15:03:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:14 start_atlas.sh
[2025-11-27 15:03:42] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 19:14 shared
[2025-11-27 15:03:42] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 19:14 input.tar.gz
[2025-11-27 15:03:42] -rw-r--r--. 1 boincer umatlas         0 Nov 26 19:14 boinc_lockfile
[2025-11-27 15:03:42] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 19:14 pandaJob.out
[2025-11-27 15:03:42] -rw-------. 1 boincer umatlas        57 Nov 26 19:14 setup.sh.local
[2025-11-27 15:03:42] -rw-------. 1 boincer umatlas    991546 Nov 26 19:15 agis_schedconf.cvmfs.json
[2025-11-27 15:03:42] drwx------. 5 boincer umatlas      4096 Nov 26 19:15 pilot3
[2025-11-27 15:03:42] -rw-r--r--. 1 boincer umatlas       533 Nov 27 14:25 boinc_task_state.xml
[2025-11-27 15:03:42] -rw-r--r--. 1 boincer umatlas      6884 Nov 27 15:00 init_data.xml
[2025-11-27 15:03:42] -rw-------. 1 boincer umatlas 905355172 Nov 27 15:00 HITS.47556161._005510.pool.root.1
[2025-11-27 15:03:42] -rw-------. 1 boincer umatlas      1059 Nov 27 15:01 memory_monitor_summary.json
[2025-11-27 15:03:42] -rw-------. 1 boincer umatlas   1516240 Nov 27 15:01 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:03:42] -rw-------. 1 boincer umatlas   2189658 Nov 27 15:01 log.47556161._005510.job.log.tgz.1
[2025-11-27 15:03:42] -rw-------. 1 boincer umatlas      8624 Nov 27 15:02 heartbeat.json
[2025-11-27 15:03:42] -rw-------. 1 boincer umatlas        95 Nov 27 15:03 pilot_heartbeat.json
[2025-11-27 15:03:42] -rw-r--r--. 1 boincer umatlas        29 Nov 27 15:03 wrapper_checkpoint.txt
[2025-11-27 15:03:42] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 15:03 boinc_mmap_file
[2025-11-27 15:03:42] -rw-------. 1 boincer umatlas      4824 Nov 27 15:03 pilotlog.txt
[2025-11-27 15:03:42] -rw-------. 1 boincer umatlas   8023413 Nov 27 15:03 log.47556161._005510.job.log.1
[2025-11-27 15:03:42] -rw-------. 1 boincer umatlas       353 Nov 27 15:03 output.list
[2025-11-27 15:03:42] -rw-r--r--. 1 boincer umatlas       620 Nov 27 15:03 runtime_log
[2025-11-27 15:03:42] -rw-------. 1 boincer umatlas  10229760 Nov 27 15:03 result.tar.gz
[2025-11-27 15:03:42] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 15:03 runtime_log.err
[2025-11-27 15:03:42] -rw-------. 1 boincer umatlas       660 Nov 27 15:03 2HzKDmzLXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmP8MKDmaKUXjn.diag
[2025-11-27 15:03:42] -rw-r--r--. 1 boincer umatlas     21891 Nov 27 15:03 stderr.txt
[2025-11-27 15:03:42] HITS file was successfully produced:
[2025-11-27 15:03:42] -rw-------. 1 boincer umatlas 905355172 Nov 27 15:00 shared/HITS.pool.root.1
[2025-11-27 15:03:42]  *** Contents of shared directory: ***
[2025-11-27 15:03:42] total 1295092
[2025-11-27 15:03:42] -rw-r--r--. 2 boincer umatlas 409967235 Nov 26 19:14 ATLAS.root_0
[2025-11-27 15:03:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:14 start_atlas.sh
[2025-11-27 15:03:42] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 19:14 input.tar.gz
[2025-11-27 15:03:42] -rw-------. 1 boincer umatlas 905355172 Nov 27 15:00 HITS.pool.root.1
[2025-11-27 15:03:42] -rw-------. 1 boincer umatlas  10229760 Nov 27 15:03 result.tar.gz
15:03:43 (308640): run_atlas exited; CPU time 252949.788529
15:03:43 (308640): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN