Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:04:32 (361341): wrapper (7.7.26015): starting
17:04:32 (361341): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 17:04:32] Arguments: --nthreads 12
[2025-11-26 17:04:32] Threads: 12
[2025-11-26 17:04:32] Checking for CVMFS
[2025-11-26 17:04:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:04:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:04:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:04:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:04:35] 2.11.5.0 2081521 29098 184316 153341 1 656 41283404 45568000 28411 130560 0 188791302 99.795 116062284 19501 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 17:04:35] CVMFS is ok
[2025-11-26 17:04:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:04:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:04:35] Further information can be found at the LHC@home message board.
[2025-11-26 17:04:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:04:35] Checking for apptainer binary...
[2025-11-26 17:04:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:04:35] Running /usr/bin/apptainer --version
[2025-11-26 17:04:35] apptainer version 1.4.1-1.el9
[2025-11-26 17:04:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:04:36] wns0041.triumf.lcg
[2025-11-26 17:04:36] apptainer works
[2025-11-26 17:04:36] Set ATHENA_PROC_NUMBER=12
[2025-11-26 17:04:36] Set ATHENA_CORE_NUMBER=12
[2025-11-26 17:04:36] Starting ATLAS job with PandaID=6898377082
[2025-11-26 17:04:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:16:35]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:16:35] 2025-11-27 01:15:37,494 | WARNING  | wrong length of table data, x=[1764205656.0, 1764205717.0, 1764205778.0, 1764205839.0, 1764205900.0, 1764205961.0], y=[1392.0, 335575.0, 680723.0, 395679.0, 522239
[2025-11-26 17:16:35] 2025-11-27 01:15:37,495 | INFO     | could have reported an average CPU frequency of 1343 MHz (4 samples)
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | ..............................
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . Timing measurements:
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . get job = 0 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . initial setup = 6 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . payload setup = 32 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . stage-in = 0 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . payload execution = 370 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . stage-out = 1 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . log creation = 0 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,497 | INFO     | ..............................
[2025-11-26 17:16:35] 2025-11-27 01:15:37,497 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 17:16:35] 2025-11-27 01:15:37,500 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898377082/pilotlog.txt
[2025-11-26 17:16:35] 2025-11-27 01:15:37,532 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 17:16:35] - Log from pilotlog.txt -
[2025-11-26 17:16:35] 2025-11-27 01:15:37,492 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898377082/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 17:16:35] 2025-11-27 01:15:37,493 | INFO     | extracted standard info from prmon json
[2025-11-26 17:16:35] 2025-11-27 01:15:37,493 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 17:16:35] 2025-11-27 01:15:37,493 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 17:16:35] 2025-11-27 01:15:37,494 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 17:16:35] 2025-11-27 01:15:37,494 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 17:16:35] 2025-11-27 01:15:37,494 | WARNING  | wrong length of table data, x=[1764205656.0, 1764205717.0, 1764205778.0, 1764205839.0, 1764205900.0, 1764205961.0], y=[1392.0, 335575.0, 680723.0, 395679.0, 522239
[2025-11-26 17:16:35] 2025-11-27 01:15:37,495 | INFO     | could have reported an average CPU frequency of 1343 MHz (4 samples)
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | ..............................
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . Timing measurements:
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . get job = 0 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . initial setup = 6 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . payload setup = 32 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . stage-in = 0 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . payload execution = 370 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . stage-out = 1 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . log creation = 0 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,497 | INFO     | ..............................
[2025-11-26 17:16:35] 2025-11-27 01:15:37,497 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 17:16:35] 2025-11-27 01:15:37,500 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898377082/pilotlog.txt
[2025-11-26 17:16:35] 2025-11-27 01:15:37,532 | WARNING  | 
[2025-11-26 17:16:35] [begin log extracts]
[2025-11-26 17:16:35] - Log from pilotlog.txt -
[2025-11-26 17:16:35] 2025-11-27 01:15:37,492 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898377082/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 17:16:35] 2025-11-27 01:15:37,493 | INFO     | extracted standard info from prmon json
[2025-11-26 17:16:35] 2025-11-27 01:15:37,493 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 17:16:35] 2025-11-27 01:15:37,493 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 17:16:35] 2025-11-27 01:15:37,494 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 17:16:35] 2025-11-27 01:15:37,494 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 17:16:35] 2025-11-27 01:15:37,494 | WARNING  | wrong length of table data, x=[1764205656.0, 1764205717.0, 1764205778.0, 1764205839.0, 1764205900.0, 1764205961.0], y=[1392.0, 335575.0, 680723.0, 395679.0, 522239
[2025-11-26 17:16:35] 2025-11-27 01:15:37,495 | INFO     | could have reported an average CPU frequency of 1343 MHz (4 samples)
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | ..............................
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . Timing measurements:
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . get job = 0 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . initial setup = 6 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . payload setup = 32 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . stage-in = 0 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . payload execution = 370 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . stage-out = 1 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,496 | INFO     | . log creation = 0 s
[2025-11-26 17:16:35] 2025-11-27 01:15:37,497 | INFO     | ..............................
[2025-11-26 17:16:35] 2025-11-27 01:15:37,497 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 17:16:35] 2025-11-27 01:15:37,500 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898377082/pilotlog.txt
[2025-11-26 17:16:35] [end log extracts]
[2025-11-26 17:16:35] 2025-11-27 01:15:37,533 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 17:16:35] 2025-11-27 01:15:37,534 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 17:16:35] 2025-11-27 01:15:37,785 | INFO     | time since job start (610s) is within the limit (172800.0s)
[2025-11-26 17:16:35] 2025-11-27 01:15:38,028 | INFO     | 
[2025-11-26 17:16:35] 2025-11-27 01:15:38,028 | INFO     | job summary report
[2025-11-26 17:16:35] 2025-11-27 01:15:38,028 | INFO     | --------------------------------------------------
[2025-11-26 17:16:35] 2025-11-27 01:15:38,028 | INFO     | PanDA job id: 6898377082
[2025-11-26 17:16:35] 2025-11-27 01:15:38,029 | INFO     | task id: 47556161
[2025-11-26 17:16:35] 2025-11-27 01:15:38,029 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 17:13:01,349 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 17:16:35] 2025-11-27 01:15:38,029 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 17:16:35] 2025-11-27 01:15:38,029 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 17:16:35] 2025-11-27 01:15:38,029 | INFO     | pilot state: failed 
[2025-11-26 17:16:35] 2025-11-27 01:15:38,029 | INFO     | transexitcode: 65
[2025-11-26 17:16:35] 2025-11-27 01:15:38,029 | INFO     | exeerrorcode: 65
[2025-11-26 17:16:35] 2025-11-27 01:15:38,029 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 17:16:35] 2025-11-27 01:15:38,029 | INFO     | exitcode: 65
[2025-11-26 17:16:35] 2025-11-27 01:15:38,029 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 17:16:35] 2025-11-27 01:15:38,030 | INFO     | cpuconsumptiontime: 83 s
[2025-11-26 17:16:35] 2025-11-27 01:15:38,030 | INFO     | nevents: 0
[2025-11-26 17:16:35] 2025-11-27 01:15:38,030 | INFO     | neventsw: 0
[2025-11-26 17:16:35] 2025-11-27 01:15:38,030 | INFO     | pid: 372462
[2025-11-26 17:16:35] 2025-11-27 01:15:38,030 | INFO     | pgrp: 372462
[2025-11-26 17:16:35] 2025-11-27 01:15:38,030 | INFO     | corecount: 12
[2025-11-26 17:16:35] 2025-11-27 01:15:38,030 | INFO     | event service: False
[2025-11-26 17:16:35] 2025-11-27 01:15:38,030 | INFO     | sizes: {0: 2284141, 1: 2284340, 13: 2284340, 24: 2284396, 26: 2284686, 36: 2284714, 405: 2310438, 406: 2314728, 407: 2314784, 554: 2314978}
[2025-11-26 17:16:35] 2025-11-27 01:15:38,030 | INFO     | --------------------------------------------------
[2025-11-26 17:16:35] 2025-11-27 01:15:38,030 | INFO     | 
[2025-11-26 17:16:35] 2025-11-27 01:15:38,031 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 17:16:35] 2025-11-27 01:15:38,388 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,388 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,388 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,388 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,388 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,389 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,389 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,389 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,389 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,389 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,389 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,389 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,389 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,389 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,389 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,390 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,390 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,390 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 17:16:35] 2025-11-27 01:15:38,390 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,390 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 17:16:35] 2025-11-27 01:15:38,390 | INFO     | job 6898377082 has completed (purged errors)
[2025-11-26 17:16:35] 2025-11-27 01:15:38,390 | INFO     | overall cleanup function is called
[2025-11-26 17:16:35] 2025-11-27 01:15:39,417 | INFO     | --- collectZombieJob: --- 10, [372462]
[2025-11-26 17:16:35] 2025-11-27 01:15:39,417 | INFO     | zombie collector waiting for pid 372462
[2025-11-26 17:16:35] 2025-11-27 01:15:39,417 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 17:16:35] 2025-11-27 01:15:39,417 | INFO     | collected zombie processes
[2025-11-26 17:16:35] 2025-11-27 01:15:39,418 | INFO     | will attempt to kill all subprocesses of pid=372462
[2025-11-26 17:16:35] 2025-11-27 01:15:40,889 | INFO     | process IDs to be killed: [372462] (in reverse order)
[2025-11-26 17:16:35] 2025-11-27 01:15:41,209 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 17:16:35] 2025-11-27 01:15:41,210 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 17:16:35] 2025-11-27 01:15:41,268 | INFO     | did not find any defunct processes belonging to 372462
[2025-11-26 17:16:35] 2025-11-27 01:15:41,362 | INFO     | did not find any defunct processes belonging to 372462
[2025-11-26 17:16:35] 2025-11-27 01:15:41,363 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 17:16:35] 2025-11-27 01:15:41,363 | INFO     | ready for new job
[2025-11-26 17:16:35] 2025-11-27 01:15:41,363 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 17:16:35] 2025-11-27 01:15:41,387 | INFO     | ***************************************
[2025-11-26 17:16:35] 2025-11-27 01:15:41,388 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 17:16:35] 2025-11-27 01:15:41,388 | INFO     | ***************************************
[2025-11-26 17:16:35] 2025-11-27 01:15:41,388 | INFO     | 
[2025-11-26 17:16:35] 2025-11-27 01:15:41,422 | INFO     | architecture information:
[2025-11-26 17:16:35] 2025-11-27 01:15:41,423 | INFO     | executing command: cat /etc/os-release
[2025-11-26 17:16:35] 2025-11-27 01:15:41,470 | INFO     | cat /etc/os-release:
[2025-11-26 17:16:35] NAME="CentOS Linux"
[2025-11-26 17:16:35] VERSION="7 (Core)"
[2025-11-26 17:16:35] ID="centos"
[2025-11-26 17:16:35] ID_LIKE="rhel fedora"
[2025-11-26 17:16:35] VERSION_ID="7"
[2025-11-26 17:16:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 17:16:35] ANSI_COLOR="0;31"
[2025-11-26 17:16:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 17:16:35] HOME_URL="https://www.centos.org/"
[2025-11-26 17:16:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 17:16:35] 
[2025-11-26 17:16:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 17:16:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 17:16:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 17:16:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 17:16:35] 
[2025-11-26 17:16:35] 2025-11-27 01:15:41,470 | INFO     | ***************************************
[2025-11-26 17:16:35] 2025-11-27 01:15:41,974 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 17:16:35] 2025-11-27 01:15:42,209 | INFO     | sufficient remaining disk space (1861662801920 B)
[2025-11-26 17:16:35] 2025-11-27 01:15:42,209 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 17:16:35] 2025-11-27 01:15:42,209 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 17:16:35] 2025-11-27 01:15:42,209 | INFO     | update_server=False
[2025-11-26 17:16:35] 2025-11-27 01:15:42,210 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:16:35] 2025-11-27 01:15:42,210 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:16:35] 2025-11-27 01:15:42,210 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:16:35] 2025-11-27 01:15:42,562 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:16:35] 2025-11-27 01:15:42,562 | INFO     | aborting loop
[2025-11-26 17:16:35] 2025-11-27 01:15:42,700 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:16:35] 2025-11-27 01:15:42,749 | INFO     | all data control threads have been joined
[2025-11-26 17:16:35] 2025-11-27 01:15:42,850 | INFO     | all payload control threads have been joined
[2025-11-26 17:16:35] 2025-11-27 01:15:42,951 | INFO     | all job control threads have been joined
[2025-11-26 17:16:35] 2025-11-27 01:15:43,215 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:16:35] 2025-11-27 01:15:43,222 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:16:35] 2025-11-27 01:15:43,394 | INFO     | [job] validate thread has finished
[2025-11-26 17:16:35] 2025-11-27 01:15:43,451 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:16:35] 2025-11-27 01:15:43,485 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:16:35] 2025-11-27 01:15:43,568 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:16:35] 2025-11-27 01:15:43,706 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:16:35] 2025-11-27 01:15:43,755 | INFO     | [data] control thread has finished
[2025-11-26 17:16:35] 2025-11-27 01:15:43,822 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:16:35] 2025-11-27 01:15:43,856 | INFO     | [payload] control thread has finished
[2025-11-26 17:16:35] 2025-11-27 01:15:43,957 | INFO     | [job] control thread has finished
[2025-11-26 17:16:35] 2025-11-27 01:15:44,218 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:16:35] 2025-11-27 01:15:44,455 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:16:35] 2025-11-27 01:15:44,532 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:16:35] 2025-11-27 01:15:44,562 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:16:35] 2025-11-27 01:15:46,219 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:16:35] 2025-11-27 01:16:11,388 | INFO     | PID=365170 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 17:16:35] 2025-11-27 01:16:11,388 | INFO     | .. there are 28 such processes running
[2025-11-26 17:16:35] 2025-11-27 01:16:11,389 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:16:35] 2025-11-27 01:16:11,389 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:16:35] 2025-11-27 01:16:11,389 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:16:35] 2025-11-27 01:16:27,811 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:16:35] 2025-11-27 01:16:29,178 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140568492177216)>', '<ExcThread(monitor, started 140567954577152)>']
[2025-11-26 17:16:35] 2025-11-27 01:16:29,498 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:16:35] 2025-11-27 01:16:29,498 | INFO     | [monitor] control thread has ended
[2025-11-26 17:16:35] 2025-11-27 01:16:34,204 | INFO     | all workflow threads have been joined
[2025-11-26 17:16:35] 2025-11-27 01:16:34,204 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:16:35] 2025-11-27 01:16:34,205 | INFO     | traces error code: 0
[2025-11-26 17:16:35] 2025-11-27 01:16:34,205 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:16:35] 2025-11-27 01:16:34,415 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:16:35] 2025-11-27 01:16:34,424 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:16:35] 2025-11-27 01:16:34,447 [wrapper] pilotpid: 365170
[2025-11-26 17:16:35] 2025-11-27 01:16:34,469 [wrapper] Pilot exit status: 0
[2025-11-26 17:16:35] 2025-11-27 01:16:34,562 [wrapper] pandaids: 6898377082
[2025-11-26 17:16:35] 2025-11-27 01:16:34,927 [wrapper] cleanup supervisor_pilot  365176 365171
[2025-11-26 17:16:35] 2025-11-27 01:16:34,954 [wrapper] Test setup, not cleaning
[2025-11-26 17:16:35] 2025-11-27 01:16:34,974 [wrapper] apfmon messages muted
[2025-11-26 17:16:35] 2025-11-27 01:16:34,984 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:16:35] 2025-11-27 01:16:34,989 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:16:35]  *** Error codes and diagnostics ***
[2025-11-26 17:16:35]     "exeErrorCode": 65,
[2025-11-26 17:16:35]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 17:16:35]     "pilotErrorCode": 1305,
[2025-11-26 17:16:35]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 17:16:35]  *** Listing of results directory ***
[2025-11-26 17:16:35] total 404556
[2025-11-26 17:16:35] -rw-r--r--. 1 boinc boinc    576529 Nov 26 08:12 pilot3.tar.gz
[2025-11-26 17:16:35] -rw-r--r--. 1 boinc boinc      5112 Nov 26 08:14 queuedata.json
[2025-11-26 17:16:35] -rwx------. 1 boinc boinc     36292 Nov 26 08:15 runpilot2-wrapper.sh
[2025-11-26 17:16:35] -rw-r--r--. 1 boinc boinc       100 Nov 26 17:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:16:35] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 17:04 run_atlas
[2025-11-26 17:16:35] -rw-r--r--. 1 boinc boinc       105 Nov 26 17:04 job.xml
[2025-11-26 17:16:35] -rw-r--r--. 1 boinc boinc      6595 Nov 26 17:04 init_data.xml
[2025-11-26 17:16:35] -rw-r--r--. 2 boinc boinc 409967235 Nov 26 17:04 EVNT.47483658._002568.pool.root.1
[2025-11-26 17:16:35] -rw-r--r--. 2 boinc boinc     15847 Nov 26 17:04 start_atlas.sh
[2025-11-26 17:16:35] drwxrwx--x. 2 boinc boinc      4096 Nov 26 17:04 shared
[2025-11-26 17:16:35] -rw-r--r--. 2 boinc boinc    590102 Nov 26 17:04 input.tar.gz
[2025-11-26 17:16:35] -rw-r--r--. 1 boinc boinc         0 Nov 26 17:04 boinc_lockfile
[2025-11-26 17:16:35] -rw-r--r--. 1 boinc boinc      2786 Nov 26 17:04 pandaJob.out
[2025-11-26 17:16:35] -rw-------. 1 boinc boinc    991546 Nov 26 17:05 agis_schedconf.cvmfs.json
[2025-11-26 17:16:35] -rw-------. 1 boinc boinc   1516240 Nov 26 17:05 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:16:35] drwx------. 5 boinc boinc      4096 Nov 26 17:05 pilot3
[2025-11-26 17:16:35] -rw-r--r--. 1 boinc boinc       524 Nov 26 17:13 boinc_task_state.xml
[2025-11-26 17:16:35] -rw-------. 1 boinc boinc      1022 Nov 26 17:13 memory_monitor_summary.json
[2025-11-26 17:16:35] -rw-------. 1 boinc boinc     53054 Nov 26 17:13 log.47556161._005504.job.log.tgz.1
[2025-11-26 17:16:35] -rw-------. 1 boinc boinc        95 Nov 26 17:15 pilot_heartbeat.json
[2025-11-26 17:16:35] -rw-------. 1 boinc boinc     10339 Nov 26 17:15 heartbeat.json
[2025-11-26 17:16:35] -rw-------. 1 boinc boinc      4822 Nov 26 17:16 pilotlog.txt
[2025-11-26 17:16:35] -rw-------. 1 boinc boinc    138245 Nov 26 17:16 log.47556161._005504.job.log.1
[2025-11-26 17:16:35] -rw-r--r--. 1 boinc boinc        23 Nov 26 17:16 wrapper_checkpoint.txt
[2025-11-26 17:16:35] -rw-------. 1 boinc boinc       186 Nov 26 17:16 output.list
[2025-11-26 17:16:35] -rw-r--r--. 1 boinc boinc       620 Nov 26 17:16 runtime_log
[2025-11-26 17:16:35] -rw-------. 1 boinc boinc    215040 Nov 26 17:16 result.tar.gz
[2025-11-26 17:16:35] -rw-------. 1 boinc boinc       644 Nov 26 17:16 XSnKDmzLXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJ8MKDmJQU2gn.diag
[2025-11-26 17:16:35] -rw-r--r--. 1 boinc boinc      8636 Nov 26 17:16 runtime_log.err
[2025-11-26 17:16:35] -rw-r--r--. 1 boinc boinc      8192 Nov 26 17:16 boinc_mmap_file
[2025-11-26 17:16:35] -rw-r--r--. 1 boinc boinc     22682 Nov 26 17:16 stderr.txt
[2025-11-26 17:16:35] No HITS result produced
[2025-11-26 17:16:35]  *** Contents of shared directory: ***
[2025-11-26 17:16:35] total 401172
[2025-11-26 17:16:35] -rw-r--r--. 2 boinc boinc 409967235 Nov 26 17:04 ATLAS.root_0
[2025-11-26 17:16:35] -rw-r--r--. 2 boinc boinc     15847 Nov 26 17:04 start_atlas.sh
[2025-11-26 17:16:35] -rw-r--r--. 2 boinc boinc    590102 Nov 26 17:04 input.tar.gz
[2025-11-26 17:16:35] -rw-------. 1 boinc boinc    215040 Nov 26 17:16 result.tar.gz
17:16:37 (361341): run_atlas exited; CPU time 95.346140
17:16:37 (361341): called boinc_finish(0)

</stderr_txt>
]]>

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