Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:17:01 (158223): wrapper (7.7.26015): starting
16:17:01 (158223): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 16:17:01] Arguments: --nthreads 12
[2025-11-26 16:17:01] Threads: 12
[2025-11-26 16:17:01] Checking for CVMFS
[2025-11-26 16:17:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:17:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:17:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:17:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:17:06] 2.11.5.0 2081521 29051 180264 153340 0 602 41197155 45568001 27797 130560 0 188213605 99.795 116013559 19498 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 16:17:06] CVMFS is ok
[2025-11-26 16:17:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:17:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:17:06] Further information can be found at the LHC@home message board.
[2025-11-26 16:17:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:17:06] Checking for apptainer binary...
[2025-11-26 16:17:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:17:06] Running /usr/bin/apptainer --version
[2025-11-26 16:17:06] apptainer version 1.4.1-1.el9
[2025-11-26 16:17:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:17:08] wns0041.triumf.lcg
[2025-11-26 16:17:08] apptainer works
[2025-11-26 16:17:08] Set ATHENA_PROC_NUMBER=12
[2025-11-26 16:17:08] Set ATHENA_CORE_NUMBER=12
[2025-11-26 16:17:08] Starting ATLAS job with PandaID=6898040253
[2025-11-26 16:17:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:28:30]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:28:30] 2025-11-27 00:27:54,233 | WARNING  | wrong length of table data, x=[1764202828.0, 1764202889.0, 1764202950.0, 1764203011.0, 1764203072.0], y=[1287.0, 323201.0, 458556.0, 776308.0, 497388.0] (must be s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,234 | INFO     | could have reported an average CPU frequency of 1352 MHz (4 samples)
[2025-11-26 16:28:30] 2025-11-27 00:27:54,234 | INFO     | ..............................
[2025-11-26 16:28:30] 2025-11-27 00:27:54,234 | INFO     | . Timing measurements:
[2025-11-26 16:28:30] 2025-11-27 00:27:54,234 | INFO     | . get job = 0 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . initial setup = 4 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . payload setup = 37 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . stage-in = 0 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . payload execution = 327 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . stage-out = 0 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . log creation = 0 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | ..............................
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 16:28:30] 2025-11-27 00:27:54,236 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898040253/pilotlog.txt
[2025-11-26 16:28:30] 2025-11-27 00:27:54,277 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 16:28:30] - Log from pilotlog.txt -
[2025-11-26 16:28:30] 2025-11-27 00:27:54,216 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898040253/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:28:30] 2025-11-27 00:27:54,216 | INFO     | extracted standard info from prmon json
[2025-11-26 16:28:30] 2025-11-27 00:27:54,217 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:28:30] 2025-11-27 00:27:54,217 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:28:30] 2025-11-27 00:27:54,217 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 16:28:30] 2025-11-27 00:27:54,217 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 16:28:30] 2025-11-27 00:27:54,233 | WARNING  | wrong length of table data, x=[1764202828.0, 1764202889.0, 1764202950.0, 1764203011.0, 1764203072.0], y=[1287.0, 323201.0, 458556.0, 776308.0, 497388.0] (must be s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,234 | INFO     | could have reported an average CPU frequency of 1352 MHz (4 samples)
[2025-11-26 16:28:30] 2025-11-27 00:27:54,234 | INFO     | ..............................
[2025-11-26 16:28:30] 2025-11-27 00:27:54,234 | INFO     | . Timing measurements:
[2025-11-26 16:28:30] 2025-11-27 00:27:54,234 | INFO     | . get job = 0 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . initial setup = 4 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . payload setup = 37 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . stage-in = 0 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . payload execution = 327 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . stage-out = 0 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . log creation = 0 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | ..............................
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 16:28:30] 2025-11-27 00:27:54,236 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898040253/pilotlog.txt
[2025-11-26 16:28:30] 2025-11-27 00:27:54,278 | WARNING  | 
[2025-11-26 16:28:30] [begin log extracts]
[2025-11-26 16:28:30] - Log from pilotlog.txt -
[2025-11-26 16:28:30] 2025-11-27 00:27:54,216 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898040253/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:28:30] 2025-11-27 00:27:54,216 | INFO     | extracted standard info from prmon json
[2025-11-26 16:28:30] 2025-11-27 00:27:54,217 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:28:30] 2025-11-27 00:27:54,217 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:28:30] 2025-11-27 00:27:54,217 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 16:28:30] 2025-11-27 00:27:54,217 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 16:28:30] 2025-11-27 00:27:54,233 | WARNING  | wrong length of table data, x=[1764202828.0, 1764202889.0, 1764202950.0, 1764203011.0, 1764203072.0], y=[1287.0, 323201.0, 458556.0, 776308.0, 497388.0] (must be s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,234 | INFO     | could have reported an average CPU frequency of 1352 MHz (4 samples)
[2025-11-26 16:28:30] 2025-11-27 00:27:54,234 | INFO     | ..............................
[2025-11-26 16:28:30] 2025-11-27 00:27:54,234 | INFO     | . Timing measurements:
[2025-11-26 16:28:30] 2025-11-27 00:27:54,234 | INFO     | . get job = 0 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . initial setup = 4 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . payload setup = 37 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . stage-in = 0 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . payload execution = 327 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . stage-out = 0 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | . log creation = 0 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | ..............................
[2025-11-26 16:28:30] 2025-11-27 00:27:54,235 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 16:28:30] 2025-11-27 00:27:54,236 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898040253/pilotlog.txt
[2025-11-26 16:28:30] [end log extracts]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,278 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 16:28:30] 2025-11-27 00:27:54,279 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 16:28:30] 2025-11-27 00:27:54,659 | INFO     | 
[2025-11-26 16:28:30] 2025-11-27 00:27:54,659 | INFO     | job summary report
[2025-11-26 16:28:30] 2025-11-27 00:27:54,659 | INFO     | --------------------------------------------------
[2025-11-26 16:28:30] 2025-11-27 00:27:54,660 | INFO     | PanDA job id: 6898040253
[2025-11-26 16:28:30] 2025-11-27 00:27:54,660 | INFO     | task id: 47556161
[2025-11-26 16:28:30] 2025-11-27 00:27:54,660 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 16:25:16,586 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 16:28:30] 2025-11-27 00:27:54,660 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 16:28:30] 2025-11-27 00:27:54,660 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:28:30] 2025-11-27 00:27:54,660 | INFO     | pilot state: failed 
[2025-11-26 16:28:30] 2025-11-27 00:27:54,660 | INFO     | transexitcode: 65
[2025-11-26 16:28:30] 2025-11-27 00:27:54,660 | INFO     | exeerrorcode: 65
[2025-11-26 16:28:30] 2025-11-27 00:27:54,660 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 16:28:30] 2025-11-27 00:27:54,660 | INFO     | exitcode: 65
[2025-11-26 16:28:30] 2025-11-27 00:27:54,661 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 16:28:30] 2025-11-27 00:27:54,661 | INFO     | cpuconsumptiontime: 83 s
[2025-11-26 16:28:30] 2025-11-27 00:27:54,661 | INFO     | nevents: 0
[2025-11-26 16:28:30] 2025-11-27 00:27:54,661 | INFO     | neventsw: 0
[2025-11-26 16:28:30] 2025-11-27 00:27:54,661 | INFO     | pid: 177486
[2025-11-26 16:28:30] 2025-11-27 00:27:54,661 | INFO     | pgrp: 177486
[2025-11-26 16:28:30] 2025-11-27 00:27:54,661 | INFO     | corecount: 12
[2025-11-26 16:28:30] 2025-11-27 00:27:54,661 | INFO     | event service: False
[2025-11-26 16:28:30] 2025-11-27 00:27:54,661 | INFO     | sizes: {0: 2283436, 2: 2284034, 3: 2284118, 4: 2284146, 5: 2284401, 6: 2284401, 17: 2284557, 28: 2284585, 36: 2284875, 40: 2284903, 369: 2310719, 372: 2315065, 518
[2025-11-26 16:28:30] 2025-11-27 00:27:54,661 | INFO     | --------------------------------------------------
[2025-11-26 16:28:30] 2025-11-27 00:27:54,662 | INFO     | 
[2025-11-26 16:28:30] 2025-11-27 00:27:54,662 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 16:28:30] 2025-11-27 00:27:54,688 | INFO     | time since job start (586s) is within the limit (172800.0s)
[2025-11-26 16:28:30] 2025-11-27 00:27:54,883 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,883 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,884 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,884 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,884 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,884 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,884 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,884 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,884 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,884 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,884 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,885 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,885 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,885 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,885 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,885 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:28:30] 2025-11-27 00:27:54,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,885 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:28:30] 2025-11-27 00:27:54,885 | INFO     | job 6898040253 has completed (purged errors)
[2025-11-26 16:28:30] 2025-11-27 00:27:54,886 | INFO     | overall cleanup function is called
[2025-11-26 16:28:30] 2025-11-27 00:27:55,934 | INFO     | --- collectZombieJob: --- 10, [177486]
[2025-11-26 16:28:30] 2025-11-27 00:27:55,934 | INFO     | zombie collector waiting for pid 177486
[2025-11-26 16:28:30] 2025-11-27 00:27:55,934 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:28:30] 2025-11-27 00:27:55,935 | INFO     | collected zombie processes
[2025-11-26 16:28:30] 2025-11-27 00:27:55,935 | INFO     | will attempt to kill all subprocesses of pid=177486
[2025-11-26 16:28:30] 2025-11-27 00:27:56,611 | INFO     | process IDs to be killed: [177486] (in reverse order)
[2025-11-26 16:28:30] 2025-11-27 00:27:56,949 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:28:30] 2025-11-27 00:27:56,949 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:28:30] 2025-11-27 00:27:56,983 | INFO     | did not find any defunct processes belonging to 177486
[2025-11-26 16:28:30] 2025-11-27 00:27:57,003 | INFO     | did not find any defunct processes belonging to 177486
[2025-11-26 16:28:30] 2025-11-27 00:27:57,008 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:28:30] 2025-11-27 00:27:57,009 | INFO     | ready for new job
[2025-11-26 16:28:30] 2025-11-27 00:27:57,009 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:28:30] 2025-11-27 00:27:57,011 | INFO     | ***************************************
[2025-11-26 16:28:30] 2025-11-27 00:27:57,011 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:28:30] 2025-11-27 00:27:57,012 | INFO     | ***************************************
[2025-11-26 16:28:30] 2025-11-27 00:27:57,012 | INFO     | 
[2025-11-26 16:28:30] 2025-11-27 00:27:57,019 | INFO     | architecture information:
[2025-11-26 16:28:30] 2025-11-27 00:27:57,027 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:28:30] 2025-11-27 00:27:57,077 | INFO     | cat /etc/os-release:
[2025-11-26 16:28:30] NAME="CentOS Linux"
[2025-11-26 16:28:30] VERSION="7 (Core)"
[2025-11-26 16:28:30] ID="centos"
[2025-11-26 16:28:30] ID_LIKE="rhel fedora"
[2025-11-26 16:28:30] VERSION_ID="7"
[2025-11-26 16:28:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:28:30] ANSI_COLOR="0;31"
[2025-11-26 16:28:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:28:30] HOME_URL="https://www.centos.org/"
[2025-11-26 16:28:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:28:30] 
[2025-11-26 16:28:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:28:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:28:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:28:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:28:30] 
[2025-11-26 16:28:30] 2025-11-27 00:27:57,078 | INFO     | ***************************************
[2025-11-26 16:28:30] 2025-11-27 00:27:57,581 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 16:28:30] 2025-11-27 00:27:57,644 | INFO     | sufficient remaining disk space (1869833306112 B)
[2025-11-26 16:28:30] 2025-11-27 00:27:57,649 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:28:30] 2025-11-27 00:27:57,650 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:28:30] 2025-11-27 00:27:57,650 | INFO     | update_server=False
[2025-11-26 16:28:30] 2025-11-27 00:27:57,650 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:28:30] 2025-11-27 00:27:57,651 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:28:30] 2025-11-27 00:27:57,656 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:28:30] 2025-11-27 00:27:57,656 | INFO     | aborting loop
[2025-11-26 16:28:30] 2025-11-27 00:27:57,697 | INFO     | all payload control threads have been joined
[2025-11-26 16:28:30] 2025-11-27 00:27:57,761 | INFO     | all data control threads have been joined
[2025-11-26 16:28:30] 2025-11-27 00:27:58,656 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:28:30] 2025-11-27 00:27:58,662 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:28:30] 2025-11-27 00:27:58,703 | INFO     | [payload] control thread has finished
[2025-11-26 16:28:30] 2025-11-27 00:27:58,708 | INFO     | all job control threads have been joined
[2025-11-26 16:28:30] 2025-11-27 00:27:58,767 | INFO     | [data] control thread has finished
[2025-11-26 16:28:30] 2025-11-27 00:27:58,802 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:28:30] 2025-11-27 00:27:58,936 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:28:30] 2025-11-27 00:27:59,171 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:28:30] 2025-11-27 00:27:59,204 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:28:30] 2025-11-27 00:27:59,205 | INFO     | [job] validate thread has finished
[2025-11-26 16:28:30] 2025-11-27 00:27:59,448 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:28:30] 2025-11-27 00:27:59,578 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:28:30] 2025-11-27 00:27:59,590 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:28:30] 2025-11-27 00:27:59,658 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:28:30] 2025-11-27 00:27:59,672 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:28:30] 2025-11-27 00:27:59,714 | INFO     | [job] control thread has finished
[2025-11-26 16:28:30] 2025-11-27 00:27:59,733 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:28:30] 2025-11-27 00:28:00,678 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:28:30] 2025-11-27 00:28:03,587 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:28:30] 2025-11-27 00:28:08,713 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:28:30] 2025-11-27 00:28:09,541 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140456737556288)>', '<ExcThread(monitor, started 140455782094592)>']
[2025-11-26 16:28:30] 2025-11-27 00:28:14,567 | INFO     | all workflow threads have been joined
[2025-11-26 16:28:30] 2025-11-27 00:28:14,567 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:28:30] 2025-11-27 00:28:14,568 | INFO     | traces error code: 0
[2025-11-26 16:28:30] 2025-11-27 00:28:14,568 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:28:30] 2025-11-27 00:28:29,152 | INFO     | PID=162155 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 16:28:30] 2025-11-27 00:28:29,153 | INFO     | .. there are 28 such processes running
[2025-11-26 16:28:30] 2025-11-27 00:28:29,155 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:28:30] 2025-11-27 00:28:29,155 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:28:30] 2025-11-27 00:28:29,155 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:28:30] 2025-11-27 00:28:29,155 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:28:30] 2025-11-27 00:28:29,155 | INFO     | [monitor] control thread has ended
[2025-11-26 16:28:30] 2025-11-27 00:28:29,500 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:28:30] 2025-11-27 00:28:29,514 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:28:30] 2025-11-27 00:28:29,528 [wrapper] pilotpid: 162155
[2025-11-26 16:28:30] 2025-11-27 00:28:29,569 [wrapper] Pilot exit status: 0
[2025-11-26 16:28:30] 2025-11-27 00:28:29,659 [wrapper] pandaids: 6898040253
[2025-11-26 16:28:30] 2025-11-27 00:28:29,887 [wrapper] cleanup supervisor_pilot  162161 162156
[2025-11-26 16:28:30] 2025-11-27 00:28:29,893 [wrapper] Test setup, not cleaning
[2025-11-26 16:28:30] 2025-11-27 00:28:29,927 [wrapper] apfmon messages muted
[2025-11-26 16:28:30] 2025-11-27 00:28:29,977 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:28:30] 2025-11-27 00:28:30,008 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:28:30]  *** Error codes and diagnostics ***
[2025-11-26 16:28:30]     "exeErrorCode": 65,
[2025-11-26 16:28:30]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 16:28:30]     "pilotErrorCode": 1305,
[2025-11-26 16:28:30]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 16:28:30]  *** Listing of results directory ***
[2025-11-26 16:28:30] total 404492
[2025-11-26 16:28:30] -rw-r--r--. 1 boinc boinc    576529 Nov 25 18:38 pilot3.tar.gz
[2025-11-26 16:28:30] -rwx------. 1 boinc boinc     36292 Nov 25 19:12 runpilot2-wrapper.sh
[2025-11-26 16:28:30] -rw-r--r--. 1 boinc boinc      5112 Nov 25 19:12 queuedata.json
[2025-11-26 16:28:30] -rw-r--r--. 1 boinc boinc       100 Nov 26 16:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:28:30] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 16:16 run_atlas
[2025-11-26 16:28:30] -rw-r--r--. 1 boinc boinc       105 Nov 26 16:16 job.xml
[2025-11-26 16:28:30] -rw-r--r--. 2 boinc boinc 409920413 Nov 26 16:17 EVNT.47483658._002412.pool.root.1
[2025-11-26 16:28:30] -rw-r--r--. 1 boinc boinc      6595 Nov 26 16:17 init_data.xml
[2025-11-26 16:28:30] -rw-r--r--. 2 boinc boinc     15847 Nov 26 16:17 start_atlas.sh
[2025-11-26 16:28:30] drwxrwx--x. 2 boinc boinc      4096 Nov 26 16:17 shared
[2025-11-26 16:28:30] -rw-r--r--. 2 boinc boinc    590104 Nov 26 16:17 input.tar.gz
[2025-11-26 16:28:30] -rw-r--r--. 1 boinc boinc         0 Nov 26 16:17 boinc_lockfile
[2025-11-26 16:28:30] -rw-r--r--. 1 boinc boinc      2785 Nov 26 16:17 pandaJob.out
[2025-11-26 16:28:30] -rw-------. 1 boinc boinc    991546 Nov 26 16:18 agis_schedconf.cvmfs.json
[2025-11-26 16:28:30] -rw-------. 1 boinc boinc   1516240 Nov 26 16:18 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:28:30] drwx------. 5 boinc boinc      4096 Nov 26 16:18 pilot3
[2025-11-26 16:28:30] -rw-r--r--. 1 boinc boinc       525 Nov 26 16:25 boinc_task_state.xml
[2025-11-26 16:28:30] -rw-------. 1 boinc boinc      1003 Nov 26 16:25 memory_monitor_summary.json
[2025-11-26 16:28:30] -rw-------. 1 boinc boinc     52687 Nov 26 16:25 log.47556161._003947.job.log.tgz.1
[2025-11-26 16:28:30] -rw-------. 1 boinc boinc     10340 Nov 26 16:27 heartbeat.json
[2025-11-26 16:28:30] -rw-r--r--. 1 boinc boinc      8192 Nov 26 16:28 boinc_mmap_file
[2025-11-26 16:28:30] -rw-r--r--. 1 boinc boinc        23 Nov 26 16:28 wrapper_checkpoint.txt
[2025-11-26 16:28:30] -rw-------. 1 boinc boinc        95 Nov 26 16:28 pilot_heartbeat.json
[2025-11-26 16:28:30] -rw-------. 1 boinc boinc       822 Nov 26 16:28 pilotlog.txt
[2025-11-26 16:28:30] -rw-------. 1 boinc boinc    135101 Nov 26 16:28 log.47556161._003947.job.log.1
[2025-11-26 16:28:30] -rw-------. 1 boinc boinc       186 Nov 26 16:28 output.list
[2025-11-26 16:28:30] -rw-r--r--. 1 boinc boinc       620 Nov 26 16:28 runtime_log
[2025-11-26 16:28:30] -rw-------. 1 boinc boinc    204800 Nov 26 16:28 result.tar.gz
[2025-11-26 16:28:30] -rw-r--r--. 1 boinc boinc      8636 Nov 26 16:28 runtime_log.err
[2025-11-26 16:28:30] -rw-------. 1 boinc boinc       647 Nov 26 16:28 hRAODmg8Ki8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmknMKDmtjjg5m.diag
[2025-11-26 16:28:30] -rw-r--r--. 1 boinc boinc     22706 Nov 26 16:28 stderr.txt
[2025-11-26 16:28:30] No HITS result produced
[2025-11-26 16:28:30]  *** Contents of shared directory: ***
[2025-11-26 16:28:30] total 401116
[2025-11-26 16:28:30] -rw-r--r--. 2 boinc boinc 409920413 Nov 26 16:17 ATLAS.root_0
[2025-11-26 16:28:30] -rw-r--r--. 2 boinc boinc     15847 Nov 26 16:17 start_atlas.sh
[2025-11-26 16:28:30] -rw-r--r--. 2 boinc boinc    590104 Nov 26 16:17 input.tar.gz
[2025-11-26 16:28:30] -rw-------. 1 boinc boinc    204800 Nov 26 16:28 result.tar.gz
16:28:32 (158223): run_atlas exited; CPU time 93.291026
16:28:32 (158223): called boinc_finish(0)

</stderr_txt>
]]>

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