Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:36:56 (1459427): wrapper (7.7.26015): starting
19:36:56 (1459427): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 19:36:56] Arguments: --nthreads 9
[2025-11-26 19:36:56] Threads: 9
[2025-11-26 19:36:56] Checking for CVMFS
[2025-11-26 19:36:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:36:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:36:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:36:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:36:58] 2.13.3.0 11541 30777 386544 153341 3 623 30745116 32935937 18304 16776704 0 68886021 99.310 123228124 40425 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 19:36:58] CVMFS is ok
[2025-11-26 19:36:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:36:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:36:58] Further information can be found at the LHC@home message board.
[2025-11-26 19:36:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:36:58] Checking for apptainer binary...
[2025-11-26 19:36:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:36:58] Running /usr/bin/apptainer --version
[2025-11-26 19:36:58] apptainer version 1.4.4-1.el9
[2025-11-26 19:36:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:36:58] c6-1-26-1.aglt2.org
[2025-11-26 19:36:58] apptainer works
[2025-11-26 19:36:58] Set ATHENA_PROC_NUMBER=9
[2025-11-26 19:36:58] Set ATHENA_CORE_NUMBER=9
[2025-11-26 19:36:58] Starting ATLAS job with PandaID=6898039282
[2025-11-26 19:36:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:59:13]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:59:13] 2025-11-27 22:58:00,981 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:59:13] 2025-11-27 22:58:01,190 | INFO     | time since job start (80427s) is within the limit (172800.0s)
[2025-11-27 17:59:13] 2025-11-27 22:58:03,208 | INFO     | time since job start (80429s) is within the limit (172800.0s)
[2025-11-27 17:59:13] 2025-11-27 22:58:03,520 | INFO     | monitor loop #4661: job 0:6898039282 is in state 'finished'
[2025-11-27 17:59:13] 2025-11-27 22:58:03,520 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:59:13] 2025-11-27 22:58:05,248 | INFO     | time since job start (80431s) is within the limit (172800.0s)
[2025-11-27 17:59:13] 2025-11-27 22:58:06,062 | INFO     | monitor loop #4662: job 0:6898039282 is in state 'finished'
[2025-11-27 17:59:13] 2025-11-27 22:58:06,063 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:59:13] 2025-11-27 22:58:07,255 | INFO     | time since job start (80433s) is within the limit (172800.0s)
[2025-11-27 17:59:13] 2025-11-27 22:58:08,568 | INFO     | monitor loop #4663: job 0:6898039282 is in state 'finished'
[2025-11-27 17:59:13] 2025-11-27 22:58:08,568 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:59:13] 2025-11-27 22:58:09,293 | INFO     | time since job start (80435s) is within the limit (172800.0s)
[2025-11-27 17:59:13] 2025-11-27 22:58:11,075 | INFO     | monitor loop #4664: job 0:6898039282 is in state 'finished'
[2025-11-27 17:59:13] 2025-11-27 22:58:11,076 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:59:13] 2025-11-27 22:58:11,305 | INFO     | time since job start (80437s) is within the limit (172800.0s)
[2025-11-27 17:59:13] 2025-11-27 22:58:12,302 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 17:59:13] 2025-11-27 22:58:12,306 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2785.5220178571426
[2025-11-27 17:59:13] 2025-11-27 22:58:12,328 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898039282/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:59:13] 2025-11-27 22:58:12,329 | INFO     | extracted standard info from prmon json
[2025-11-27 17:59:13] 2025-11-27 22:58:12,329 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:59:13] 2025-11-27 22:58:12,329 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:59:13] 2025-11-27 22:58:12,371 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:59:13] 2025-11-27 22:58:12,377 | INFO     | sum of square deviations: 708356204542.291
[2025-11-27 17:59:13] 2025-11-27 22:58:12,441 | INFO     | sum of deviations: 2576181556164.1675
[2025-11-27 17:59:13] 2025-11-27 22:58:12,441 | INFO     | mean x: 1764244076.3280182
[2025-11-27 17:59:13] 2025-11-27 22:58:12,441 | INFO     | mean y: 3161199.927866363
[2025-11-27 17:59:13] 2025-11-27 22:58:12,442 | INFO     | intersect: -6413120638.028107
[2025-11-27 17:59:13] 2025-11-27 22:58:12,444 | INFO     | chi2: 17.37544503029675
[2025-11-27 17:59:13] 2025-11-27 22:58:12,446 | INFO     | sum of square deviations: 700320510280.3848
[2025-11-27 17:59:13] 2025-11-27 22:58:12,483 | INFO     | sum of deviations: 3056890401283.8037
[2025-11-27 17:59:13] 2025-11-27 22:58:12,483 | INFO     | mean x: 1764243923.839939
[2025-11-27 17:59:13] 2025-11-27 22:58:12,483 | INFO     | mean y: 3170320.541920732
[2025-11-27 17:59:13] 2025-11-27 22:58:12,483 | INFO     | intersect: -7697732676.2164755
[2025-11-27 17:59:13] 2025-11-27 22:58:12,485 | INFO     | chi2: 14.152751963231486
[2025-11-27 17:59:13] 2025-11-27 22:58:12,485 | INFO     | current chi2=14.152751963231486 (change=18.54739870803887 %)
[2025-11-27 17:59:13] 2025-11-27 22:58:12,485 | INFO     | right removable region: 1311
[2025-11-27 17:59:13] 2025-11-27 22:58:12,488 | INFO     | sum of square deviations: 700317916981.7079
[2025-11-27 17:59:13] 2025-11-27 22:58:12,524 | INFO     | sum of deviations: 2053556455638.491
[2025-11-27 17:59:13] 2025-11-27 22:58:12,524 | INFO     | mean x: 1764244228.840701
[2025-11-27 17:59:13] 2025-11-27 22:58:12,524 | INFO     | mean y: 3171113.1554878047
[2025-11-27 17:59:13] 2025-11-27 22:58:12,524 | INFO     | intersect: -5170158081.495695
[2025-11-27 17:59:13] 2025-11-27 22:58:12,526 | INFO     | chi2: 14.070488334823237
[2025-11-27 17:59:13] 2025-11-27 22:58:12,526 | INFO     | current chi2=14.070488334823237 (change=19.020846313350905 %)
[2025-11-27 17:59:13] 2025-11-27 22:58:12,527 | INFO     | left removable region: 10
[2025-11-27 17:59:13] 2025-11-27 22:58:12,528 | INFO     | sum of square deviations: 682851768895.0331
[2025-11-27 17:59:13] 2025-11-27 22:58:12,563 | INFO     | sum of deviations: 2399943994279.2354
[2025-11-27 17:59:13] 2025-11-27 22:58:12,564 | INFO     | mean x: 1764244198.3635664
[2025-11-27 17:59:13] 2025-11-27 22:58:12,564 | INFO     | mean y: 3186414.6041506534
[2025-11-27 17:59:13] 2025-11-27 22:58:12,564 | INFO     | intersect: -6197408591.770479
[2025-11-27 17:59:13] 2025-11-27 22:58:12,566 | INFO     | chi2: 9.599184746783243
[2025-11-27 17:59:13] 2025-11-27 22:58:12,566 | INFO     | current memory leak: 3.51 B/s (using 1301 data points, chi2=9.60)
[2025-11-27 17:59:13] 2025-11-27 22:58:12,567 | INFO     | could have reported an average CPU frequency of 2823 MHz (47 samples)
[2025-11-27 17:59:13] 2025-11-27 22:58:12,568 | INFO     | ..............................
[2025-11-27 17:59:13] 2025-11-27 22:58:12,568 | INFO     | . Timing measurements:
[2025-11-27 17:59:13] 2025-11-27 22:58:12,568 | INFO     | . get job = 0 s
[2025-11-27 17:59:13] 2025-11-27 22:58:12,568 | INFO     | . initial setup = 3 s
[2025-11-27 17:59:13] 2025-11-27 22:58:12,568 | INFO     | . payload setup = 25 s
[2025-11-27 17:59:13] 2025-11-27 22:58:12,568 | INFO     | . stage-in = 0 s
[2025-11-27 17:59:13] 2025-11-27 22:58:12,568 | INFO     | . payload execution = 80319 s
[2025-11-27 17:59:13] 2025-11-27 22:58:12,568 | INFO     | . stage-out = 10 s
[2025-11-27 17:59:13] 2025-11-27 22:58:12,568 | INFO     | . log creation = 1 s
[2025-11-27 17:59:13] 2025-11-27 22:58:12,568 | INFO     | ..............................
[2025-11-27 17:59:13] 2025-11-27 22:58:12,688 | INFO     | 
[2025-11-27 17:59:13] 2025-11-27 22:58:12,688 | INFO     | job summary report
[2025-11-27 17:59:13] 2025-11-27 22:58:12,688 | INFO     | --------------------------------------------------
[2025-11-27 17:59:13] 2025-11-27 22:58:12,689 | INFO     | PanDA job id: 6898039282
[2025-11-27 17:59:13] 2025-11-27 22:58:12,689 | INFO     | task id: 47556161
[2025-11-27 17:59:13] 2025-11-27 22:58:12,689 | INFO     | errors: (none)
[2025-11-27 17:59:13] 2025-11-27 22:58:12,689 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:59:13] 2025-11-27 22:58:12,689 | INFO     | pilot state: finished 
[2025-11-27 17:59:13] 2025-11-27 22:58:12,689 | INFO     | transexitcode: 0
[2025-11-27 17:59:13] 2025-11-27 22:58:12,689 | INFO     | exeerrorcode: 0
[2025-11-27 17:59:13] 2025-11-27 22:58:12,689 | INFO     | exeerrordiag: 
[2025-11-27 17:59:13] 2025-11-27 22:58:12,689 | INFO     | exitcode: 0
[2025-11-27 17:59:13] 2025-11-27 22:58:12,689 | INFO     | exitmsg: OK
[2025-11-27 17:59:13] 2025-11-27 22:58:12,689 | INFO     | cpuconsumptiontime: 245430 s
[2025-11-27 17:59:13] 2025-11-27 22:58:12,689 | INFO     | nevents: 1000
[2025-11-27 17:59:13] 2025-11-27 22:58:12,689 | INFO     | neventsw: 0
[2025-11-27 17:59:13] 2025-11-27 22:58:12,690 | INFO     | pid: 1479175
[2025-11-27 17:59:13] 2025-11-27 22:58:12,690 | INFO     | pgrp: 1479175
[2025-11-27 17:59:13] 2025-11-27 22:58:12,690 | INFO     | corecount: 9
[2025-11-27 17:59:13] 2025-11-27 22:58:12,690 | INFO     | event service: False
[2025-11-27 17:59:13] 2025-11-27 22:58:12,690 | INFO     | sizes: {0: 2283436, 1: 2284121, 2: 2284320, 13: 2284320, 20: 2284638, 23: 2284666, 80349: 2347125, 80350: 2347124, 80361: 2356174, 80362: 2356230, 80398: 2356476}
[2025-11-27 17:59:13] 2025-11-27 22:58:12,690 | INFO     | --------------------------------------------------
[2025-11-27 17:59:13] 2025-11-27 22:58:12,690 | INFO     | 
[2025-11-27 17:59:13] 2025-11-27 22:58:12,690 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 17:59:13] 2025-11-27 22:58:12,715 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,715 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,715 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,715 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,715 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,716 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,716 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,716 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,716 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,716 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,716 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,716 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,716 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,716 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,716 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,716 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,716 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,716 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:59:13] 2025-11-27 22:58:12,716 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,717 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:59:13] 2025-11-27 22:58:12,717 | INFO     | job 6898039282 has completed (purged errors)
[2025-11-27 17:59:13] 2025-11-27 22:58:12,717 | INFO     | overall cleanup function is called
[2025-11-27 17:59:13] 2025-11-27 22:58:13,869 | INFO     | --- collectZombieJob: --- 10, [1479175]
[2025-11-27 17:59:13] 2025-11-27 22:58:13,870 | INFO     | zombie collector waiting for pid 1479175
[2025-11-27 17:59:13] 2025-11-27 22:58:13,870 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:59:13] 2025-11-27 22:58:13,870 | INFO     | collected zombie processes
[2025-11-27 17:59:13] 2025-11-27 22:58:13,870 | INFO     | will attempt to kill all subprocesses of pid=1479175
[2025-11-27 17:59:13] 2025-11-27 22:58:14,607 | INFO     | process IDs to be killed: [1479175] (in reverse order)
[2025-11-27 17:59:13] 2025-11-27 22:58:14,814 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:59:13] 2025-11-27 22:58:14,815 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:59:13] 2025-11-27 22:58:14,829 | INFO     | did not find any defunct processes belonging to 1479175
[2025-11-27 17:59:13] 2025-11-27 22:58:14,860 | INFO     | did not find any defunct processes belonging to 1479175
[2025-11-27 17:59:13] 2025-11-27 22:58:14,870 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:59:13] 2025-11-27 22:58:14,870 | INFO     | ready for new job
[2025-11-27 17:59:13] 2025-11-27 22:58:14,871 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:59:13] 2025-11-27 22:58:14,908 | INFO     | ***************************************
[2025-11-27 17:59:13] 2025-11-27 22:58:14,908 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:59:13] 2025-11-27 22:58:14,908 | INFO     | ***************************************
[2025-11-27 17:59:13] 2025-11-27 22:58:14,908 | INFO     | 
[2025-11-27 17:59:13] 2025-11-27 22:58:14,923 | INFO     | architecture information:
[2025-11-27 17:59:13] 2025-11-27 22:58:14,944 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:59:13] 2025-11-27 22:58:15,094 | INFO     | cat /etc/os-release:
[2025-11-27 17:59:13] NAME="CentOS Linux"
[2025-11-27 17:59:13] VERSION="7 (Core)"
[2025-11-27 17:59:13] ID="centos"
[2025-11-27 17:59:13] ID_LIKE="rhel fedora"
[2025-11-27 17:59:13] VERSION_ID="7"
[2025-11-27 17:59:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:59:13] ANSI_COLOR="0;31"
[2025-11-27 17:59:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:59:13] HOME_URL="https://www.centos.org/"
[2025-11-27 17:59:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:59:13] 
[2025-11-27 17:59:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:59:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:59:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:59:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:59:13] 
[2025-11-27 17:59:13] 2025-11-27 22:58:15,094 | INFO     | ***************************************
[2025-11-27 17:59:13] 2025-11-27 22:58:15,597 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 17:59:13] 2025-11-27 22:58:15,660 | INFO     | sufficient remaining disk space (68935483392 B)
[2025-11-27 17:59:13] 2025-11-27 22:58:15,660 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:59:13] 2025-11-27 22:58:15,660 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:59:13] 2025-11-27 22:58:15,660 | INFO     | update_server=False
[2025-11-27 17:59:13] 2025-11-27 22:58:15,660 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:59:13] 2025-11-27 22:58:15,664 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:59:13] 2025-11-27 22:58:15,820 | INFO     | all payload control threads have been joined
[2025-11-27 17:59:13] 2025-11-27 22:58:16,090 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 17:59:13] 2025-11-27 22:58:16,091 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 17:59:13] 2025-11-27 22:58:16,091 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:59:13] 2025-11-27 22:58:16,091 | INFO     | will abort loop
[2025-11-27 17:59:13] 2025-11-27 22:58:16,592 | INFO     | all job control threads have been joined
[2025-11-27 17:59:13] 2025-11-27 22:58:16,667 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:59:13] 2025-11-27 22:58:16,729 | INFO     | all data control threads have been joined
[2025-11-27 17:59:13] 2025-11-27 22:58:16,826 | INFO     | [payload] control thread has finished
[2025-11-27 17:59:13] 2025-11-27 22:58:16,919 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:59:13] 2025-11-27 22:58:16,926 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:59:13] 2025-11-27 22:58:17,096 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:59:13] 2025-11-27 22:58:17,142 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:59:13] 2025-11-27 22:58:17,275 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:59:13] 2025-11-27 22:58:17,598 | INFO     | [job] control thread has finished
[2025-11-27 17:59:13] 2025-11-27 22:58:17,653 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:59:13] 2025-11-27 22:58:17,694 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:59:13] 2025-11-27 22:58:17,722 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:59:13] 2025-11-27 22:58:17,748 | INFO     | [data] control thread has finished
[2025-11-27 17:59:13] 2025-11-27 22:58:17,907 | INFO     | [job] validate thread has finished
[2025-11-27 17:59:13] 2025-11-27 22:58:17,907 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:59:13] 2025-11-27 22:58:17,915 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:59:13] 2025-11-27 22:58:18,700 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:59:13] 2025-11-27 22:58:19,151 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:59:13] 2025-11-27 22:58:19,674 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:59:13] 2025-11-27 22:58:44,931 | INFO     | PID=1468960 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:59:13] 2025-11-27 22:58:44,931 | INFO     | .. there are 26 such processes running
[2025-11-27 17:59:13] 2025-11-27 22:58:44,932 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:59:13] 2025-11-27 22:58:44,932 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:59:13] 2025-11-27 22:58:44,932 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:59:13] 2025-11-27 22:59:04,118 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:59:13] 2025-11-27 22:59:05,606 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140139788818240)>', '<ExcThread(monitor, started 140139061827328)>']
[2025-11-27 17:59:13] 2025-11-27 22:59:06,095 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:59:13] 2025-11-27 22:59:06,095 | INFO     | [monitor] control thread has ended
[2025-11-27 17:59:13] 2025-11-27 22:59:10,632 | INFO     | all workflow threads have been joined
[2025-11-27 17:59:13] 2025-11-27 22:59:10,632 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:59:13] 2025-11-27 22:59:10,633 | INFO     | traces error code: 0
[2025-11-27 17:59:13] 2025-11-27 22:59:10,633 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:59:13] 2025-11-27 22:59:11,781 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:59:13] 2025-11-27 22:59:11,813 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:59:13] 2025-11-27 22:59:11,860 [wrapper] pilotpid: 1468960
[2025-11-27 17:59:13] 2025-11-27 22:59:11,887 [wrapper] Pilot exit status: 0
[2025-11-27 17:59:13] 2025-11-27 22:59:11,998 [wrapper] pandaids: 6898039282
[2025-11-27 17:59:13] 2025-11-27 22:59:12,493 [wrapper] cleanup supervisor_pilot  971268 1468961
[2025-11-27 17:59:13] 2025-11-27 22:59:12,576 [wrapper] Test setup, not cleaning
[2025-11-27 17:59:13] 2025-11-27 22:59:12,633 [wrapper] apfmon messages muted
[2025-11-27 17:59:13] 2025-11-27 22:59:12,667 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:59:13] 2025-11-27 22:59:12,690 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:59:13]  *** Error codes and diagnostics ***
[2025-11-27 17:59:13]     "exeErrorCode": 0,
[2025-11-27 17:59:13]     "exeErrorDiag": "",
[2025-11-27 17:59:13]     "pilotErrorCode": 0,
[2025-11-27 17:59:13]     "pilotErrorDiag": "",
[2025-11-27 17:59:13]  *** Listing of results directory ***
[2025-11-27 17:59:13] total 1332724
[2025-11-27 17:59:13] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 21:38 pilot3.tar.gz
[2025-11-27 17:59:13] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:51 queuedata.json
[2025-11-27 17:59:13] -rwx------. 1 boincer umatlas     36292 Nov 25 21:51 runpilot2-wrapper.sh
[2025-11-27 17:59:13] -rw-r--r--. 1 boincer umatlas       100 Nov 26 19:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:59:13] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 19:36 run_atlas
[2025-11-27 17:59:13] -rw-r--r--. 1 boincer umatlas       105 Nov 26 19:36 job.xml
[2025-11-27 17:59:13] -rw-r--r--. 2 boincer umatlas 410902710 Nov 26 19:36 EVNT.47483658._002391.pool.root.1
[2025-11-27 17:59:13] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:36 start_atlas.sh
[2025-11-27 17:59:13] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 19:36 shared
[2025-11-27 17:59:13] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 19:36 input.tar.gz
[2025-11-27 17:59:13] -rw-r--r--. 1 boincer umatlas         0 Nov 26 19:36 boinc_lockfile
[2025-11-27 17:59:13] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 19:36 pandaJob.out
[2025-11-27 17:59:13] -rw-------. 1 boincer umatlas        57 Nov 26 19:37 setup.sh.local
[2025-11-27 17:59:13] -rw-------. 1 boincer umatlas    991546 Nov 26 19:37 agis_schedconf.cvmfs.json
[2025-11-27 17:59:13] drwx------. 5 boincer umatlas      4096 Nov 26 19:37 pilot3
[2025-11-27 17:59:13] -rw-r--r--. 1 boincer umatlas       533 Nov 27 17:21 boinc_task_state.xml
[2025-11-27 17:59:13] -rw-r--r--. 1 boincer umatlas      6845 Nov 27 17:55 init_data.xml
[2025-11-27 17:59:13] -rw-------. 1 boincer umatlas 925118136 Nov 27 17:56 HITS.47556161._003740.pool.root.1
[2025-11-27 17:59:13] -rw-------. 1 boincer umatlas      1058 Nov 27 17:57 memory_monitor_summary.json
[2025-11-27 17:59:13] -rw-------. 1 boincer umatlas   1516240 Nov 27 17:57 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:59:13] -rw-------. 1 boincer umatlas   2456770 Nov 27 17:57 log.47556161._003740.job.log.tgz.1
[2025-11-27 17:59:13] -rw-------. 1 boincer umatlas      8630 Nov 27 17:58 heartbeat.json
[2025-11-27 17:59:13] -rw-------. 1 boincer umatlas        95 Nov 27 17:58 pilot_heartbeat.json
[2025-11-27 17:59:13] -rw-------. 1 boincer umatlas      5010 Nov 27 17:59 pilotlog.txt
[2025-11-27 17:59:13] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 17:59 boinc_mmap_file
[2025-11-27 17:59:13] -rw-r--r--. 1 boincer umatlas        29 Nov 27 17:59 wrapper_checkpoint.txt
[2025-11-27 17:59:13] -rw-------. 1 boincer umatlas   9928580 Nov 27 17:59 log.47556161._003740.job.log.1
[2025-11-27 17:59:13] -rw-------. 1 boincer umatlas       353 Nov 27 17:59 output.list
[2025-11-27 17:59:13] -rw-r--r--. 1 boincer umatlas       620 Nov 27 17:59 runtime_log
[2025-11-27 17:59:13] -rw-------. 1 boincer umatlas  12400640 Nov 27 17:59 result.tar.gz
[2025-11-27 17:59:13] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 17:59 runtime_log.err
[2025-11-27 17:59:13] -rw-------. 1 boincer umatlas       661 Nov 27 17:59 L0hMDmhnKi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmboJKDmra0KLo.diag
[2025-11-27 17:59:13] -rw-r--r--. 1 boincer umatlas     21807 Nov 27 17:59 stderr.txt
[2025-11-27 17:59:13] HITS file was successfully produced:
[2025-11-27 17:59:13] -rw-------. 1 boincer umatlas 925118136 Nov 27 17:56 shared/HITS.pool.root.1
[2025-11-27 17:59:13]  *** Contents of shared directory: ***
[2025-11-27 17:59:13] total 1317428
[2025-11-27 17:59:13] -rw-r--r--. 2 boincer umatlas 410902710 Nov 26 19:36 ATLAS.root_0
[2025-11-27 17:59:13] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:36 start_atlas.sh
[2025-11-27 17:59:13] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 19:36 input.tar.gz
[2025-11-27 17:59:13] -rw-------. 1 boincer umatlas 925118136 Nov 27 17:56 HITS.pool.root.1
[2025-11-27 17:59:13] -rw-------. 1 boincer umatlas  12400640 Nov 27 17:59 result.tar.gz
17:59:36 (1459427): run_atlas exited; CPU time 247455.991931
17:59:36 (1459427): called boinc_finish(0)

</stderr_txt>
]]>

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