Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:28:27 (2486773): wrapper (7.7.26015): starting
19:28:27 (2486773): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 19:28:27] Arguments: --nthreads 8
[2025-11-26 19:28:27] Threads: 8
[2025-11-26 19:28:27] Checking for CVMFS
[2025-11-26 19:28:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:28:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:28:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:28:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:28:29] 2.13.3.0 10121 30722 430392 153341 2 531 22223619 32935936 63673 16776704 0 347970101 99.785 180954899 27430 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 19:28:29] CVMFS is ok
[2025-11-26 19:28:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:28:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:28:29] Further information can be found at the LHC@home message board.
[2025-11-26 19:28:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:28:29] Checking for apptainer binary...
[2025-11-26 19:28:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:28:29] Running /usr/bin/apptainer --version
[2025-11-26 19:28:29] apptainer version 1.4.4-1.el9
[2025-11-26 19:28:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:28:30] lc-10-11.aglt2.org
[2025-11-26 19:28:30] apptainer works
[2025-11-26 19:28:30] Set ATHENA_PROC_NUMBER=8
[2025-11-26 19:28:30] Set ATHENA_CORE_NUMBER=8
[2025-11-26 19:28:30] Starting ATLAS job with PandaID=6897999089
[2025-11-26 19:28:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:02:09]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:02:09] 2025-11-28 00:00:57,975 | INFO     | time since job start (84693s) is within the limit (172800.0s)
[2025-11-27 19:02:09] 2025-11-28 00:00:59,464 | INFO     | monitor loop #4300: job 0:6897999089 is in state 'finished'
[2025-11-27 19:02:09] 2025-11-28 00:00:59,465 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:02:09] 2025-11-28 00:00:59,982 | INFO     | time since job start (84695s) is within the limit (172800.0s)
[2025-11-27 19:02:09] 2025-11-28 00:01:01,970 | INFO     | monitor loop #4301: job 0:6897999089 is in state 'finished'
[2025-11-27 19:02:09] 2025-11-28 00:01:01,971 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:02:09] 2025-11-28 00:01:02,006 | INFO     | time since job start (84698s) is within the limit (172800.0s)
[2025-11-27 19:02:09] 2025-11-28 00:01:04,028 | INFO     | time since job start (84700s) is within the limit (172800.0s)
[2025-11-27 19:02:09] 2025-11-28 00:01:04,496 | INFO     | monitor loop #4302: job 0:6897999089 is in state 'finished'
[2025-11-27 19:02:09] 2025-11-28 00:01:04,497 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:02:09] 2025-11-28 00:01:06,037 | INFO     | time since job start (84702s) is within the limit (172800.0s)
[2025-11-27 19:02:09] 2025-11-28 00:01:07,001 | INFO     | monitor loop #4303: job 0:6897999089 is in state 'finished'
[2025-11-27 19:02:09] 2025-11-28 00:01:07,002 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:02:09] 2025-11-28 00:01:08,004 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 19:02:09] 2025-11-28 00:01:08,025 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2699.0356249999995
[2025-11-27 19:02:09] 2025-11-28 00:01:08,050 | INFO     | time since job start (84704s) is within the limit (172800.0s)
[2025-11-27 19:02:09] 2025-11-28 00:01:08,121 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6897999089/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:02:09] 2025-11-28 00:01:08,122 | INFO     | extracted standard info from prmon json
[2025-11-27 19:02:09] 2025-11-28 00:01:08,122 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:02:09] 2025-11-28 00:01:08,122 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:02:09] 2025-11-28 00:01:08,218 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:02:09] 2025-11-28 00:01:08,220 | INFO     | sum of square deviations: 825597672946.4994
[2025-11-27 19:02:09] 2025-11-28 00:01:08,498 | INFO     | sum of deviations: 2149054212923.2224
[2025-11-27 19:02:09] 2025-11-28 00:01:08,499 | INFO     | mean x: 1764245735.5007215
[2025-11-27 19:02:09] 2025-11-28 00:01:08,499 | INFO     | mean y: 2911577.2792207794
[2025-11-27 19:02:09] 2025-11-28 00:01:08,499 | INFO     | intersect: -4589470226.53353
[2025-11-27 19:02:09] 2025-11-28 00:01:08,531 | INFO     | chi2: 16.5582485705701
[2025-11-27 19:02:09] 2025-11-28 00:01:08,533 | INFO     | sum of square deviations: 816695681998.9119
[2025-11-27 19:02:09] 2025-11-28 00:01:08,921 | INFO     | sum of deviations: 2623555700160.5884
[2025-11-27 19:02:09] 2025-11-28 00:01:08,994 | INFO     | mean x: 1764245583.0079653
[2025-11-27 19:02:09] 2025-11-28 00:01:08,994 | INFO     | mean y: 2919704.4011585806
[2025-11-27 19:02:09] 2025-11-28 00:01:08,994 | INFO     | intersect: -5664548188.235325
[2025-11-27 19:02:09] 2025-11-28 00:01:08,996 | INFO     | chi2: 13.306471889812054
[2025-11-27 19:02:09] 2025-11-28 00:01:08,996 | INFO     | current chi2=13.306471889812054 (change=19.638409623452635 %)
[2025-11-27 19:02:09] 2025-11-28 00:01:08,996 | INFO     | right removable region: 1380
[2025-11-27 19:02:09] 2025-11-28 00:01:09,052 | INFO     | sum of square deviations: 816693990468.9128
[2025-11-27 19:02:09] 2025-11-28 00:01:09,308 | INFO     | sum of deviations: 1601773961258.0522
[2025-11-27 19:02:09] 2025-11-28 00:01:09,309 | INFO     | mean x: 1764245888.0079653
[2025-11-27 19:02:09] 2025-11-28 00:01:09,309 | INFO     | mean y: 2920950.2679217956
[2025-11-27 19:02:09] 2025-11-28 00:01:09,309 | INFO     | intersect: -3457277309.6032166
[2025-11-27 19:02:09] 2025-11-28 00:01:09,311 | INFO     | chi2: 12.67841222379343
[2025-11-27 19:02:09] 2025-11-28 00:01:09,311 | INFO     | current chi2=12.67841222379343 (change=23.431441618001315 %)
[2025-11-27 19:02:09] 2025-11-28 00:01:09,311 | INFO     | left removable region: 10
[2025-11-27 19:02:09] 2025-11-28 00:01:09,338 | INFO     | sum of square deviations: 797334279780.004
[2025-11-27 19:02:09] 2025-11-28 00:01:09,560 | INFO     | sum of deviations: 1911725178640.944
[2025-11-27 19:02:09] 2025-11-28 00:01:09,561 | INFO     | mean x: 1764245857.518978
[2025-11-27 19:02:09] 2025-11-28 00:01:09,561 | INFO     | mean y: 2935143.559854015
[2025-11-27 19:02:09] 2025-11-28 00:01:09,561 | INFO     | intersect: -4227101508.1473885
[2025-11-27 19:02:09] 2025-11-28 00:01:09,589 | INFO     | monitor loop #4304: job 0:6897999089 is in state 'finished'
[2025-11-27 19:02:09] 2025-11-28 00:01:09,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:02:09] 2025-11-28 00:01:09,591 | INFO     | chi2: 7.850757279379292
[2025-11-27 19:02:09] 2025-11-28 00:01:09,592 | INFO     | current memory leak: 2.40 B/s (using 1370 data points, chi2=7.85)
[2025-11-27 19:02:09] 2025-11-28 00:01:09,623 | INFO     | could have reported an average CPU frequency of 2707 MHz (49 samples)
[2025-11-27 19:02:09] 2025-11-28 00:01:09,623 | INFO     | ..............................
[2025-11-27 19:02:09] 2025-11-28 00:01:09,623 | INFO     | . Timing measurements:
[2025-11-27 19:02:09] 2025-11-28 00:01:09,623 | INFO     | . get job = 0 s
[2025-11-27 19:02:09] 2025-11-28 00:01:09,623 | INFO     | . initial setup = 4 s
[2025-11-27 19:02:09] 2025-11-28 00:01:09,623 | INFO     | . payload setup = 37 s
[2025-11-27 19:02:09] 2025-11-28 00:01:09,623 | INFO     | . stage-in = 0 s
[2025-11-27 19:02:09] 2025-11-28 00:01:09,623 | INFO     | . payload execution = 84550 s
[2025-11-27 19:02:09] 2025-11-28 00:01:09,623 | INFO     | . stage-out = 13 s
[2025-11-27 19:02:09] 2025-11-28 00:01:09,623 | INFO     | . log creation = 2 s
[2025-11-27 19:02:09] 2025-11-28 00:01:09,623 | INFO     | ..............................
[2025-11-27 19:02:09] 2025-11-28 00:01:10,169 | INFO     | time since job start (84706s) is within the limit (172800.0s)
[2025-11-27 19:02:09] 2025-11-28 00:01:10,752 | INFO     | 
[2025-11-27 19:02:09] 2025-11-28 00:01:10,753 | INFO     | job summary report
[2025-11-27 19:02:09] 2025-11-28 00:01:10,753 | INFO     | --------------------------------------------------
[2025-11-27 19:02:09] 2025-11-28 00:01:10,753 | INFO     | PanDA job id: 6897999089
[2025-11-27 19:02:09] 2025-11-28 00:01:10,753 | INFO     | task id: 47556173
[2025-11-27 19:02:09] 2025-11-28 00:01:10,753 | INFO     | errors: (none)
[2025-11-27 19:02:09] 2025-11-28 00:01:10,753 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:02:09] 2025-11-28 00:01:10,753 | INFO     | pilot state: finished 
[2025-11-27 19:02:09] 2025-11-28 00:01:10,753 | INFO     | transexitcode: 0
[2025-11-27 19:02:09] 2025-11-28 00:01:10,753 | INFO     | exeerrorcode: 0
[2025-11-27 19:02:09] 2025-11-28 00:01:10,753 | INFO     | exeerrordiag: 
[2025-11-27 19:02:09] 2025-11-28 00:01:10,753 | INFO     | exitcode: 0
[2025-11-27 19:02:09] 2025-11-28 00:01:10,753 | INFO     | exitmsg: OK
[2025-11-27 19:02:09] 2025-11-28 00:01:10,753 | INFO     | cpuconsumptiontime: 259637 s
[2025-11-27 19:02:09] 2025-11-28 00:01:10,754 | INFO     | nevents: 1000
[2025-11-27 19:02:09] 2025-11-28 00:01:10,754 | INFO     | neventsw: 0
[2025-11-27 19:02:09] 2025-11-28 00:01:10,754 | INFO     | pid: 2526004
[2025-11-27 19:02:09] 2025-11-28 00:01:10,754 | INFO     | pgrp: 2526004
[2025-11-27 19:02:09] 2025-11-28 00:01:10,754 | INFO     | corecount: 8
[2025-11-27 19:02:09] 2025-11-28 00:01:10,754 | INFO     | event service: False
[2025-11-27 19:02:09] 2025-11-28 00:01:10,754 | INFO     | sizes: {0: 2284037, 1: 2284121, 2: 2284320, 13: 2284320, 24: 2284376, 29: 2284666, 35: 2284822, 84592: 2348013, 84593: 2348012, 84607: 2357062, 84610: 2357118, 846
[2025-11-27 19:02:09] 2025-11-28 00:01:10,754 | INFO     | --------------------------------------------------
[2025-11-27 19:02:09] 2025-11-28 00:01:10,754 | INFO     | 
[2025-11-27 19:02:09] 2025-11-28 00:01:10,754 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 19:02:09] 2025-11-28 00:01:10,934 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,934 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,934 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,934 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,934 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,934 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,934 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,934 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,934 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,935 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,935 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,935 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,935 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,935 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,935 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,935 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,935 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,935 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:02:09] 2025-11-28 00:01:10,935 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,935 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:02:09] 2025-11-28 00:01:10,935 | INFO     | job 6897999089 has completed (purged errors)
[2025-11-27 19:02:09] 2025-11-28 00:01:10,936 | INFO     | overall cleanup function is called
[2025-11-27 19:02:09] 2025-11-28 00:01:12,061 | INFO     | --- collectZombieJob: --- 10, [2526004]
[2025-11-27 19:02:09] 2025-11-28 00:01:12,062 | INFO     | zombie collector waiting for pid 2526004
[2025-11-27 19:02:09] 2025-11-28 00:01:12,062 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:02:09] 2025-11-28 00:01:12,062 | INFO     | collected zombie processes
[2025-11-27 19:02:09] 2025-11-28 00:01:12,062 | INFO     | will attempt to kill all subprocesses of pid=2526004
[2025-11-27 19:02:09] 2025-11-28 00:01:13,835 | INFO     | process IDs to be killed: [2526004] (in reverse order)
[2025-11-27 19:02:09] 2025-11-28 00:01:14,644 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:02:09] 2025-11-28 00:01:14,645 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:02:09] 2025-11-28 00:01:14,709 | INFO     | did not find any defunct processes belonging to 2526004
[2025-11-27 19:02:09] 2025-11-28 00:01:14,772 | INFO     | did not find any defunct processes belonging to 2526004
[2025-11-27 19:02:09] 2025-11-28 00:01:14,777 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:02:09] 2025-11-28 00:01:14,778 | INFO     | ready for new job
[2025-11-27 19:02:09] 2025-11-28 00:01:14,778 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:02:09] 2025-11-28 00:01:14,789 | INFO     | ***************************************
[2025-11-27 19:02:09] 2025-11-28 00:01:14,789 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:02:09] 2025-11-28 00:01:14,790 | INFO     | ***************************************
[2025-11-27 19:02:09] 2025-11-28 00:01:14,790 | INFO     | 
[2025-11-27 19:02:09] 2025-11-28 00:01:14,798 | INFO     | architecture information:
[2025-11-27 19:02:09] 2025-11-28 00:01:14,803 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:02:09] 2025-11-28 00:01:14,863 | INFO     | cat /etc/os-release:
[2025-11-27 19:02:09] NAME="CentOS Linux"
[2025-11-27 19:02:09] VERSION="7 (Core)"
[2025-11-27 19:02:09] ID="centos"
[2025-11-27 19:02:09] ID_LIKE="rhel fedora"
[2025-11-27 19:02:09] VERSION_ID="7"
[2025-11-27 19:02:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:02:09] ANSI_COLOR="0;31"
[2025-11-27 19:02:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:02:09] HOME_URL="https://www.centos.org/"
[2025-11-27 19:02:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:02:09] 
[2025-11-27 19:02:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:02:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:02:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:02:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:02:09] 
[2025-11-27 19:02:09] 2025-11-28 00:01:14,864 | INFO     | ***************************************
[2025-11-27 19:02:09] 2025-11-28 00:01:15,368 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 19:02:09] 2025-11-28 00:01:15,413 | INFO     | sufficient remaining disk space (88349868032 B)
[2025-11-27 19:02:09] 2025-11-28 00:01:15,413 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:02:09] 2025-11-28 00:01:15,413 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:02:09] 2025-11-28 00:01:15,413 | INFO     | update_server=False
[2025-11-27 19:02:09] 2025-11-28 00:01:15,413 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:02:09] 2025-11-28 00:01:15,485 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:02:09] 2025-11-28 00:01:15,613 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:02:09] 2025-11-28 00:01:15,614 | INFO     | aborting loop
[2025-11-27 19:02:09] 2025-11-28 00:01:15,738 | INFO     | all job control threads have been joined
[2025-11-27 19:02:09] 2025-11-28 00:01:15,994 | INFO     | all data control threads have been joined
[2025-11-27 19:02:09] 2025-11-28 00:01:16,096 | INFO     | all payload control threads have been joined
[2025-11-27 19:02:09] 2025-11-28 00:01:16,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:02:09] 2025-11-28 00:01:16,420 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:02:09] 2025-11-28 00:01:16,467 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:02:09] 2025-11-28 00:01:16,491 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:02:09] 2025-11-28 00:01:16,619 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:02:09] 2025-11-28 00:01:16,717 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:02:09] 2025-11-28 00:01:16,769 | INFO     | [job] control thread has finished
[2025-11-27 19:02:09] 2025-11-28 00:01:17,000 | INFO     | [data] control thread has finished
[2025-11-27 19:02:09] 2025-11-28 00:01:17,104 | INFO     | [payload] control thread has finished
[2025-11-27 19:02:09] 2025-11-28 00:01:17,127 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:02:09] 2025-11-28 00:01:17,595 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:02:09] 2025-11-28 00:01:17,596 | INFO     | [job] validate thread has finished
[2025-11-27 19:02:09] 2025-11-28 00:01:17,611 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:02:09] 2025-11-28 00:01:17,612 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:02:09] 2025-11-28 00:01:17,612 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:02:09] 2025-11-28 00:01:17,612 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:02:09] 2025-11-28 00:01:18,482 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:02:09] 2025-11-28 00:01:20,351 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:02:09] 2025-11-28 00:01:47,668 | INFO     | PID=2495018 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:02:09] 2025-11-28 00:01:47,668 | INFO     | .. there are 91 such processes running
[2025-11-27 19:02:09] 2025-11-28 00:01:47,669 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:02:09] 2025-11-28 00:01:47,669 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:02:09] 2025-11-28 00:01:47,669 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:02:09] 2025-11-28 00:02:02,292 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:02:09] 2025-11-28 00:02:02,732 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140208032048960)>', '<ExcThread(monitor, started 140207462545152)>']
[2025-11-27 19:02:09] 2025-11-28 00:02:02,813 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:02:09] 2025-11-28 00:02:02,813 | INFO     | [monitor] control thread has ended
[2025-11-27 19:02:09] 2025-11-28 00:02:07,758 | INFO     | all workflow threads have been joined
[2025-11-27 19:02:09] 2025-11-28 00:02:07,759 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:02:09] 2025-11-28 00:02:07,759 | INFO     | traces error code: 0
[2025-11-27 19:02:09] 2025-11-28 00:02:07,759 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:02:09] 2025-11-28 00:02:08,401 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:02:09] 2025-11-28 00:02:08,448 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:02:09] 2025-11-28 00:02:08,462 [wrapper] pilotpid: 2495018
[2025-11-27 19:02:09] 2025-11-28 00:02:08,476 [wrapper] Pilot exit status: 0
[2025-11-27 19:02:09] 2025-11-28 00:02:08,628 [wrapper] pandaids: 6897999089
[2025-11-27 19:02:09] 2025-11-28 00:02:08,855 [wrapper] cleanup supervisor_pilot   73729 2495019
[2025-11-27 19:02:09] 2025-11-28 00:02:08,875 [wrapper] Test setup, not cleaning
[2025-11-27 19:02:09] 2025-11-28 00:02:08,910 [wrapper] apfmon messages muted
[2025-11-27 19:02:09] 2025-11-28 00:02:08,912 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:02:09] 2025-11-28 00:02:08,986 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:02:09]  *** Error codes and diagnostics ***
[2025-11-27 19:02:09]     "exeErrorCode": 0,
[2025-11-27 19:02:09]     "exeErrorDiag": "",
[2025-11-27 19:02:09]     "pilotErrorCode": 0,
[2025-11-27 19:02:09]     "pilotErrorDiag": "",
[2025-11-27 19:02:09]  *** Listing of results directory ***
[2025-11-27 19:02:09] total 1327208
[2025-11-27 19:02:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 21:38 pilot3.tar.gz
[2025-11-27 19:02:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:41 queuedata.json
[2025-11-27 19:02:09] -rwx------. 1 boincer umatlas     36292 Nov 25 21:44 runpilot2-wrapper.sh
[2025-11-27 19:02:09] -rw-r--r--. 1 boincer umatlas       100 Nov 26 19:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:02:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 19:28 run_atlas
[2025-11-27 19:02:09] -rw-r--r--. 1 boincer umatlas       105 Nov 26 19:28 job.xml
[2025-11-27 19:02:09] -rw-r--r--. 2 boincer umatlas 411577891 Nov 26 19:28 EVNT.47483658._003153.pool.root.1
[2025-11-27 19:02:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:28 start_atlas.sh
[2025-11-27 19:02:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 19:28 shared
[2025-11-27 19:02:09] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 19:28 input.tar.gz
[2025-11-27 19:02:09] -rw-r--r--. 1 boincer umatlas         0 Nov 26 19:28 boinc_lockfile
[2025-11-27 19:02:09] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 19:28 pandaJob.out
[2025-11-27 19:02:09] -rw-------. 1 boincer umatlas        57 Nov 26 19:28 setup.sh.local
[2025-11-27 19:02:09] -rw-------. 1 boincer umatlas    991546 Nov 26 19:29 agis_schedconf.cvmfs.json
[2025-11-27 19:02:09] drwx------. 5 boincer umatlas      4096 Nov 26 19:29 pilot3
[2025-11-27 19:02:09] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:34 boinc_task_state.xml
[2025-11-27 19:02:09] -rw-------. 1 boincer umatlas 919533916 Nov 27 18:58 HITS.47556173._001096.pool.root.1
[2025-11-27 19:02:09] -rw-r--r--. 1 boincer umatlas      6888 Nov 27 19:00 init_data.xml
[2025-11-27 19:02:09] -rw-------. 1 boincer umatlas      1059 Nov 27 19:00 memory_monitor_summary.json
[2025-11-27 19:02:09] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:00 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:02:09] -rw-------. 1 boincer umatlas   2354406 Nov 27 19:00 log.47556173._001096.job.log.tgz.1
[2025-11-27 19:02:09] -rw-------. 1 boincer umatlas      8634 Nov 27 19:01 heartbeat.json
[2025-11-27 19:02:09] -rw-------. 1 boincer umatlas        95 Nov 27 19:01 pilot_heartbeat.json
[2025-11-27 19:02:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:02 boinc_mmap_file
[2025-11-27 19:02:09] -rw-------. 1 boincer umatlas      4824 Nov 27 19:02 pilotlog.txt
[2025-11-27 19:02:09] -rw-r--r--. 1 boincer umatlas        29 Nov 27 19:02 wrapper_checkpoint.txt
[2025-11-27 19:02:09] -rw-------. 1 boincer umatlas   9661903 Nov 27 19:02 log.47556173._001096.job.log.1
[2025-11-27 19:02:09] -rw-------. 1 boincer umatlas       353 Nov 27 19:02 output.list
[2025-11-27 19:02:09] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:02 runtime_log
[2025-11-27 19:02:09] -rw-------. 1 boincer umatlas  12032000 Nov 27 19:02 result.tar.gz
[2025-11-27 19:02:09] -rw-------. 1 boincer umatlas       660 Nov 27 19:02 xgELDmnhKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjkMKDmXRcRrm.diag
[2025-11-27 19:02:09] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 19:02 runtime_log.err
[2025-11-27 19:02:09] -rw-r--r--. 1 boincer umatlas     21818 Nov 27 19:02 stderr.txt
[2025-11-27 19:02:09] HITS file was successfully produced:
[2025-11-27 19:02:09] -rw-------. 1 boincer umatlas 919533916 Nov 27 18:58 shared/HITS.pool.root.1
[2025-11-27 19:02:09]  *** Contents of shared directory: ***
[2025-11-27 19:02:09] total 1312272
[2025-11-27 19:02:09] -rw-r--r--. 2 boincer umatlas 411577891 Nov 26 19:28 ATLAS.root_0
[2025-11-27 19:02:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:28 start_atlas.sh
[2025-11-27 19:02:09] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 19:28 input.tar.gz
[2025-11-27 19:02:09] -rw-------. 1 boincer umatlas 919533916 Nov 27 18:58 HITS.pool.root.1
[2025-11-27 19:02:09] -rw-------. 1 boincer umatlas  12032000 Nov 27 19:02 result.tar.gz
19:02:11 (2486773): run_atlas exited; CPU time 264412.991498
19:02:11 (2486773): called boinc_finish(0)

</stderr_txt>
]]>

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